data_6YU3
#
_model_server_result.job_id            23pEM6S7C5c16fjCO7BG_g 
_model_server_result.datetime_utc      '2024-10-14 09:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yu3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":708}' 
#
_entry.id    6YU3 
#
_exptl.entry_id    6YU3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.76 
_cell.angle_gamma         90 
_cell.entry_id            6YU3 
_cell.length_a            44.28 
_cell.length_b            49.89 
_cell.length_c            110.05 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YU3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 26 A GLY 24 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc2 A O ALA 28 A ALA 26 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc3 A O VAL 29 A VAL 27 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc5 A O THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc8 A O ALA 322 A ALA 320 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc9 A OG SER 325 A SER 323 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc10 A OG SER 326 A SER 324 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc11 B NA NA . A NA 701 1_555 L O HOH . A HOH 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc12 C NA NA . A NA 702 1_555 D OXT PHE . A PHE 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 351 n n 
C1 S1 SOG sing 352 n n 
C1 O5 SOG sing 353 n n 
C1 H1 SOG sing 354 n n 
C2 C3 SOG sing 355 n n 
C2 O2 SOG sing 356 n n 
C2 H2 SOG sing 357 n n 
C3 C4 SOG sing 358 n n 
C3 O3 SOG sing 359 n n 
C3 H3 SOG sing 360 n n 
C4 C5 SOG sing 361 n n 
C4 O4 SOG sing 362 n n 
C4 H4 SOG sing 363 n n 
C5 C6 SOG sing 364 n n 
C5 O5 SOG sing 365 n n 
C5 H5 SOG sing 366 n n 
C6 O6 SOG sing 367 n n 
C6 H61 SOG sing 368 n n 
C6 H62 SOG sing 369 n n 
C1' C2' SOG sing 370 n n 
C1' S1 SOG sing 371 n n 
C1' "H1'1" SOG sing 372 n n 
C1' "H1'2" SOG sing 373 n n 
C2' C3' SOG sing 374 n n 
C2' "H2'1" SOG sing 375 n n 
C2' "H2'2" SOG sing 376 n n 
C3' C4' SOG sing 377 n n 
C3' "H3'1" SOG sing 378 n n 
C3' "H3'2" SOG sing 379 n n 
C4' C5' SOG sing 380 n n 
C4' "H4'1" SOG sing 381 n n 
C4' "H4'2" SOG sing 382 n n 
C5' C6' SOG sing 383 n n 
C5' "H5'1" SOG sing 384 n n 
C5' "H5'2" SOG sing 385 n n 
C6' C7' SOG sing 386 n n 
C6' "H6'1" SOG sing 387 n n 
C6' "H6'2" SOG sing 388 n n 
C7' C8' SOG sing 389 n n 
C7' "H7'1" SOG sing 390 n n 
C7' "H7'2" SOG sing 391 n n 
C8' "H8'1" SOG sing 392 n n 
C8' "H8'2" SOG sing 393 n n 
C8' "H8'3" SOG sing 394 n n 
O2 HO2 SOG sing 395 n n 
O3 HO3 SOG sing 396 n n 
O4 HO4 SOG sing 397 n n 
O6 HO6 SOG sing 398 n n 
#
_atom_sites.entry_id                     6YU3 
_atom_sites.fract_transf_matrix[1][1]    0.022584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002677 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00915 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 701 701 NA NA . 
C 2 NA A 1 702 702 NA NA . 
D 3 PHE A 1 703 601 PHE PHE . 
E 4 LMT A 1 704 801 LMT LMT . 
F 4 LMT A 1 705 901 LMT LMT . 
G 4 LMT A 1 706 1001 LMT LMT . 
H 4 LMT A 1 707 1201 LMT LMT . 
I 5 SOG A 1 708 1 SOG SOG . 
J 5 SOG A 1 709 2 SOG SOG . 
K 6 GOL A 1 710 1 GOL GOL . 
L 7 HOH A 1 801 44 HOH HOH . 
L 7 HOH A 2 802 59 HOH HOH . 
L 7 HOH A 3 803 2 HOH HOH . 
L 7 HOH A 4 804 37 HOH HOH . 
L 7 HOH A 5 805 62 HOH HOH . 
L 7 HOH A 6 806 16 HOH HOH . 
L 7 HOH A 7 807 43 HOH HOH . 
L 7 HOH A 8 808 18 HOH HOH . 
L 7 HOH A 9 809 23 HOH HOH . 
L 7 HOH A 10 810 10 HOH HOH . 
L 7 HOH A 11 811 32 HOH HOH . 
L 7 HOH A 12 812 48 HOH HOH . 
L 7 HOH A 13 813 24 HOH HOH . 
L 7 HOH A 14 814 34 HOH HOH . 
L 7 HOH A 15 815 13 HOH HOH . 
L 7 HOH A 16 816 9 HOH HOH . 
L 7 HOH A 17 817 26 HOH HOH . 
L 7 HOH A 18 818 54 HOH HOH . 
L 7 HOH A 19 819 36 HOH HOH . 
L 7 HOH A 20 820 22 HOH HOH . 
L 7 HOH A 21 821 50 HOH HOH . 
L 7 HOH A 22 822 20 HOH HOH . 
L 7 HOH A 23 823 1 HOH HOH . 
L 7 HOH A 24 824 40 HOH HOH . 
L 7 HOH A 25 825 21 HOH HOH . 
L 7 HOH A 26 826 7 HOH HOH . 
L 7 HOH A 27 827 30 HOH HOH . 
L 7 HOH A 28 828 14 HOH HOH . 
L 7 HOH A 29 829 60 HOH HOH . 
L 7 HOH A 30 830 63 HOH HOH . 
L 7 HOH A 31 831 33 HOH HOH . 
L 7 HOH A 32 832 64 HOH HOH . 
L 7 HOH A 33 833 29 HOH HOH . 
L 7 HOH A 34 834 31 HOH HOH . 
L 7 HOH A 35 835 11 HOH HOH . 
L 7 HOH A 36 836 27 HOH HOH . 
L 7 HOH A 37 837 4 HOH HOH . 
L 7 HOH A 38 838 3 HOH HOH . 
L 7 HOH A 39 839 25 HOH HOH . 
L 7 HOH A 40 840 47 HOH HOH . 
L 7 HOH A 41 841 56 HOH HOH . 
L 7 HOH A 42 842 53 HOH HOH . 
L 7 HOH A 43 843 8 HOH HOH . 
L 7 HOH A 44 844 28 HOH HOH . 
L 7 HOH A 45 845 5 HOH HOH . 
L 7 HOH A 46 846 15 HOH HOH . 
L 7 HOH A 47 847 6 HOH HOH . 
L 7 HOH A 48 848 35 HOH HOH . 
L 7 HOH A 49 849 57 HOH HOH . 
L 7 HOH A 50 850 49 HOH HOH . 
L 7 HOH A 51 851 51 HOH HOH . 
L 7 HOH A 52 852 61 HOH HOH . 
L 7 HOH A 53 853 12 HOH HOH . 
L 7 HOH A 54 854 55 HOH HOH . 
L 7 HOH A 55 855 52 HOH HOH . 
L 7 HOH A 56 856 39 HOH HOH . 
L 7 HOH A 57 857 19 HOH HOH . 
L 7 HOH A 58 858 58 HOH HOH . 
L 7 HOH A 59 859 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . I 5 61.259 41.964 141.362 1 54.59 ? C1 SOG 708 A 1 
HETATM 2 C C2 SOG . . . I 5 62.122 41.699 142.582 1 59.16 ? C2 SOG 708 A 1 
HETATM 3 C C3 SOG . . . I 5 62.302 42.972 143.319 1 66.97 ? C3 SOG 708 A 1 
HETATM 4 C C4 SOG . . . I 5 62.951 44.035 142.481 1 69.07 ? C4 SOG 708 A 1 
HETATM 5 C C5 SOG . . . I 5 62.474 44.125 141.021 1 62.37 ? C5 SOG 708 A 1 
HETATM 6 C C6 SOG . . . I 5 63.617 44.616 140.178 1 57.84 ? C6 SOG 708 A 1 
HETATM 7 C C1' SOG . . . I 5 62.117 39.196 140.736 1 59.49 ? C1' SOG 708 A 1 
HETATM 8 C C2' SOG . . . I 5 61.629 37.85 140.204 1 52.21 ? C2' SOG 708 A 1 
HETATM 9 C C3' SOG . . . I 5 61.988 37.723 138.726 1 50.29 ? C3' SOG 708 A 1 
HETATM 10 C C4' SOG . . . I 5 61.736 36.286 138.276 1 53.45 ? C4' SOG 708 A 1 
HETATM 11 C C5' SOG . . . I 5 62.051 36.144 136.788 1 49.21 ? C5' SOG 708 A 1 
HETATM 12 C C6' SOG . . . I 5 61.625 34.752 136.325 1 52.17 ? C6' SOG 708 A 1 
HETATM 13 C C7' SOG . . . I 5 61.651 34.685 134.799 1 50.01 ? C7' SOG 708 A 1 
HETATM 14 C C8' SOG . . . I 5 61.123 33.329 134.335 1 44.85 ? C8' SOG 708 A 1 
HETATM 15 S S1 SOG . . . I 5 60.827 40.458 140.53 1 66.89 ? S1 SOG 708 A 1 
HETATM 16 O O2 SOG . . . I 5 61.497 40.731 143.449 1 64.32 ? O2 SOG 708 A 1 
HETATM 17 O O3 SOG . . . I 5 63.12 42.718 144.499 1 68.6 ? O3 SOG 708 A 1 
HETATM 18 O O4 SOG . . . I 5 62.718 45.31 143.098 1 70.97 ? O4 SOG 708 A 1 
HETATM 19 O O5 SOG . . . I 5 61.988 42.864 140.416 1 63.65 ? O5 SOG 708 A 1 
HETATM 20 O O6 SOG . . . I 5 64.136 45.804 140.71 1 64.43 ? O6 SOG 708 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           20 
#