data_6YU4 # _model_server_result.job_id UrZbzSFFACr47A3mskUEvA _model_server_result.datetime_utc '2024-10-14 07:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6YU4 # _exptl.entry_id 6YU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.08 _cell.angle_gamma 90 _cell.entry_id 6YU4 _cell.length_a 44.15 _cell.length_b 49.85 _cell.length_c 109.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 B NA NA . A NA 701 1_555 N O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc12 C NA NA . A NA 702 1_555 D OXT PFF . A PFF 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 285 n n C1 O3P PCW sing 286 n n C1 H11 PCW sing 287 n n C1 H12 PCW sing 288 n n C2 C3 PCW sing 289 n n C2 O2 PCW sing 290 n n C2 H2 PCW sing 291 n n C3 O3 PCW sing 292 n n C3 H31 PCW sing 293 n n C3 H32 PCW sing 294 n n C4 C5 PCW sing 295 n n C4 O4P PCW sing 296 n n C4 H41 PCW sing 297 n n C4 H42 PCW sing 298 n n C5 N PCW sing 299 n n C5 H51 PCW sing 300 n n C5 H52 PCW sing 301 n n C6 N PCW sing 302 n n C6 H61 PCW sing 303 n n C6 H62 PCW sing 304 n n C6 H63 PCW sing 305 n n C7 N PCW sing 306 n n C7 H71 PCW sing 307 n n C7 H72 PCW sing 308 n n C7 H73 PCW sing 309 n n C8 N PCW sing 310 n n C8 H81 PCW sing 311 n n C8 H82 PCW sing 312 n n C8 H83 PCW sing 313 n n C11 C12 PCW sing 314 n n C11 O3 PCW sing 315 n n C11 O11 PCW doub 316 n n C12 C13 PCW sing 317 n n C12 H121 PCW sing 318 n n C12 H122 PCW sing 319 n n C13 C14 PCW sing 320 n n C13 H131 PCW sing 321 n n C13 H132 PCW sing 322 n n C14 C15 PCW sing 323 n n C14 H141 PCW sing 324 n n C14 H142 PCW sing 325 n n C15 C16 PCW sing 326 n n C15 H151 PCW sing 327 n n C15 H152 PCW sing 328 n n C16 C17 PCW sing 329 n n C16 H161 PCW sing 330 n n C16 H162 PCW sing 331 n n C17 C18 PCW sing 332 n n C17 H171 PCW sing 333 n n C17 H172 PCW sing 334 n n C18 C19 PCW sing 335 n n C18 H181 PCW sing 336 n n C18 H182 PCW sing 337 n n C19 C20 PCW doub 338 z n C19 H19 PCW sing 339 n n C20 C21 PCW sing 340 n n C20 H20 PCW sing 341 n n C21 C22 PCW sing 342 n n C21 H211 PCW sing 343 n n C21 H212 PCW sing 344 n n C22 C23 PCW sing 345 n n C22 H221 PCW sing 346 n n C22 H222 PCW sing 347 n n C23 C24 PCW sing 348 n n C23 H231 PCW sing 349 n n C23 H232 PCW sing 350 n n C24 C25 PCW sing 351 n n C24 H241 PCW sing 352 n n C24 H242 PCW sing 353 n n C25 C26 PCW sing 354 n n C25 H251 PCW sing 355 n n C25 H252 PCW sing 356 n n C26 C27 PCW sing 357 n n C26 H261 PCW sing 358 n n C26 H262 PCW sing 359 n n C27 C28 PCW sing 360 n n C27 H271 PCW sing 361 n n C27 H272 PCW sing 362 n n C28 H281 PCW sing 363 n n C28 H282 PCW sing 364 n n C28 H283 PCW sing 365 n n C31 C32 PCW sing 366 n n C31 O2 PCW sing 367 n n C31 O31 PCW doub 368 n n C32 C33 PCW sing 369 n n C32 H321 PCW sing 370 n n C32 H322 PCW sing 371 n n C33 C34 PCW sing 372 n n C33 H331 PCW sing 373 n n C33 H332 PCW sing 374 n n C34 C35 PCW sing 375 n n C34 H341 PCW sing 376 n n C34 H342 PCW sing 377 n n C35 C36 PCW sing 378 n n C35 H351 PCW sing 379 n n C35 H352 PCW sing 380 n n C36 C37 PCW sing 381 n n C36 H361 PCW sing 382 n n C36 H362 PCW sing 383 n n C37 C38 PCW sing 384 n n C37 H371 PCW sing 385 n n C37 H372 PCW sing 386 n n C38 C39 PCW sing 387 n n C38 H381 PCW sing 388 n n C38 H382 PCW sing 389 n n C39 C40 PCW doub 390 z n C39 H39 PCW sing 391 n n C40 C41 PCW sing 392 n n C40 H40 PCW sing 393 n n C41 C42 PCW sing 394 n n C41 H411 PCW sing 395 n n C41 H412 PCW sing 396 n n C42 C43 PCW sing 397 n n C42 H421 PCW sing 398 n n C42 H422 PCW sing 399 n n C43 C44 PCW sing 400 n n C43 H431 PCW sing 401 n n C43 H432 PCW sing 402 n n C44 C45 PCW sing 403 n n C44 H441 PCW sing 404 n n C44 H442 PCW sing 405 n n C45 C46 PCW sing 406 n n C45 H451 PCW sing 407 n n C45 H452 PCW sing 408 n n C46 C47 PCW sing 409 n n C46 H461 PCW sing 410 n n C46 H462 PCW sing 411 n n C47 C48 PCW sing 412 n n C47 H471 PCW sing 413 n n C47 H472 PCW sing 414 n n C48 H481 PCW sing 415 n n C48 H482 PCW sing 416 n n C48 H483 PCW sing 417 n n O1P P PCW sing 418 n n O1P H1P PCW sing 419 n n O2P P PCW doub 420 n n O3P P PCW sing 421 n n O4P P PCW sing 422 n n # _atom_sites.entry_id 6YU4 _atom_sites.fract_transf_matrix[1][1] 0.02265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 701 701 NA NA . C 2 NA A 1 702 702 NA NA . D 3 PFF A 1 703 601 PFF PFF . E 4 PCW A 1 704 801 PCW PCW . F 5 LMT A 1 705 1453 LMT LMT . G 5 LMT A 1 706 1454 LMT LMT . H 5 LMT A 1 707 1455 LMT LMT . I 5 LMT A 1 708 1456 LMT LMT . J 6 SOG A 1 709 1452 SOG SOG . K 6 SOG A 1 710 1453 SOG SOG . L 5 LMT A 1 711 1 LMT LMT . M 5 LMT A 1 712 2 LMT LMT . N 7 HOH A 1 801 36 HOH HOH . N 7 HOH A 2 802 11 HOH HOH . N 7 HOH A 3 803 34 HOH HOH . N 7 HOH A 4 804 12 HOH HOH . N 7 HOH A 5 805 3 HOH HOH . N 7 HOH A 6 806 18 HOH HOH . N 7 HOH A 7 807 1 HOH HOH . N 7 HOH A 8 808 30 HOH HOH . N 7 HOH A 9 809 5 HOH HOH . N 7 HOH A 10 810 26 HOH HOH . N 7 HOH A 11 811 6 HOH HOH . N 7 HOH A 12 812 20 HOH HOH . N 7 HOH A 13 813 13 HOH HOH . N 7 HOH A 14 814 38 HOH HOH . N 7 HOH A 15 815 22 HOH HOH . N 7 HOH A 16 816 8 HOH HOH . N 7 HOH A 17 817 9 HOH HOH . N 7 HOH A 18 818 10 HOH HOH . N 7 HOH A 19 819 27 HOH HOH . N 7 HOH A 20 820 29 HOH HOH . N 7 HOH A 21 821 21 HOH HOH . N 7 HOH A 22 822 7 HOH HOH . N 7 HOH A 23 823 33 HOH HOH . N 7 HOH A 24 824 17 HOH HOH . N 7 HOH A 25 825 23 HOH HOH . N 7 HOH A 26 826 31 HOH HOH . N 7 HOH A 27 827 35 HOH HOH . N 7 HOH A 28 828 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . E 4 20.838 17.03 146.829 1 60.36 ? C1 PCW 704 A 1 HETATM 2 C C2 PCW . . . E 4 20.372 18.419 147.232 1 52.91 ? C2 PCW 704 A 1 HETATM 3 C C3 PCW . . . E 4 19.69 19.094 146.046 1 53.91 ? C3 PCW 704 A 1 HETATM 4 C C4 PCW . . . E 4 19.473 13.894 149.77 1 69.99 ? C4 PCW 704 A 1 HETATM 5 C C5 PCW . . . E 4 19.951 13.617 151.195 1 68.68 ? C5 PCW 704 A 1 HETATM 6 C C6 PCW . . . E 4 17.987 14.247 152.316 1 64.08 ? C6 PCW 704 A 1 HETATM 7 C C7 PCW . . . E 4 20.089 14.461 153.405 1 61.97 ? C7 PCW 704 A 1 HETATM 8 C C8 PCW . . . E 4 19.534 15.928 151.658 1 68.72 ? C8 PCW 704 A 1 HETATM 9 C C11 PCW . . . E 4 20.11 21.184 147.064 1 64.39 ? C11 PCW 704 A 1 HETATM 10 C C12 PCW . . . E 4 21.297 22.067 147.453 1 61.26 ? C12 PCW 704 A 1 HETATM 11 C C13 PCW . . . E 4 20.827 23.517 147.596 1 66.57 ? C13 PCW 704 A 1 HETATM 12 C C14 PCW . . . E 4 20.206 23.726 148.978 1 53.59 ? C14 PCW 704 A 1 HETATM 13 C C15 PCW . . . E 4 19.146 24.822 148.913 1 62.34 ? C15 PCW 704 A 1 HETATM 14 C C16 PCW . . . E 4 19.792 26.082 148.339 1 63.21 ? C16 PCW 704 A 1 HETATM 15 C C17 PCW . . . E 4 18.923 27.292 148.672 1 49.87 ? C17 PCW 704 A 1 HETATM 16 C C31 PCW . . . E 4 19.988 18.609 149.536 1 67.34 ? C31 PCW 704 A 1 HETATM 17 C C32 PCW . . . E 4 19.133 19.34 150.569 1 66.23 ? C32 PCW 704 A 1 HETATM 18 C C33 PCW . . . E 4 19.924 20.528 151.111 1 60.21 ? C33 PCW 704 A 1 HETATM 19 C C34 PCW . . . E 4 20.758 20.111 152.324 1 60.18 ? C34 PCW 704 A 1 HETATM 20 C C35 PCW . . . E 4 22.151 20.733 152.222 1 62.71 ? C35 PCW 704 A 1 HETATM 21 C C36 PCW . . . E 4 22.064 22.144 151.638 1 55.41 ? C36 PCW 704 A 1 HETATM 22 C C37 PCW . . . E 4 21.891 23.158 152.765 1 55.13 ? C37 PCW 704 A 1 HETATM 23 C C38 PCW . . . E 4 21.332 24.457 152.195 1 55.28 ? C38 PCW 704 A 1 HETATM 24 N N PCW . . . E 4 19.39 14.566 152.138 1 71.04 ? N PCW 704 A 1 HETATM 25 O O2 PCW . . . E 4 19.454 18.299 148.278 1 66.77 ? O2 PCW 704 A 1 HETATM 26 O O3 PCW . . . E 4 20.164 20.404 145.902 1 64.22 ? O3 PCW 704 A 1 HETATM 27 O O11 PCW . . . E 4 19.137 21.167 147.744 1 72.54 ? O11 PCW 704 A 1 HETATM 28 O O31 PCW . . . E 4 21.105 18.31 149.801 1 70.32 ? O31 PCW 704 A 1 HETATM 29 O O1P PCW . . . E 4 22.097 15.644 149.619 1 67.95 ? O1P PCW 704 A 1 HETATM 30 O O2P PCW . . . E 4 22.466 14.628 147.408 1 70.62 ? O2P PCW 704 A 1 HETATM 31 O O3P PCW . . . E 4 20.356 16.098 147.751 1 75.74 ? O3P PCW 704 A 1 HETATM 32 O O4P PCW . . . E 4 20.552 13.693 148.898 1 75.95 ? O4P PCW 704 A 1 HETATM 33 P P PCW . . . E 4 21.412 15.019 148.421 1 86.84 ? P PCW 704 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #