data_6YU4 # _model_server_result.job_id 9CNxIbf0cwrSF_o_DriLFA _model_server_result.datetime_utc '2025-02-16 22:50:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":712}' # _entry.id 6YU4 # _exptl.entry_id 6YU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.08 _cell.angle_gamma 90 _cell.entry_id 6YU4 _cell.length_a 44.15 _cell.length_b 49.85 _cell.length_c 109.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 B NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 B NA NA . A NA 701 1_555 N O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc12 C NA NA . A NA 702 1_555 D OXT PFF . A PFF 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 160 n n C1B O1B LMT sing 161 n n C1B O5B LMT sing 162 n n C1B H1B LMT sing 163 n n C2B C3B LMT sing 164 n n C2B O2B LMT sing 165 n n C2B H2B LMT sing 166 n n C3B C4B LMT sing 167 n n C3B O3B LMT sing 168 n n C3B H3B LMT sing 169 n n C4B C5B LMT sing 170 n n C4B O4' LMT sing 171 n n C4B H4B LMT sing 172 n n C5B C6B LMT sing 173 n n C5B O5B LMT sing 174 n n C5B H5B LMT sing 175 n n C6B O6B LMT sing 176 n n C6B "H6'2" LMT sing 177 n n C6B "H6'1" LMT sing 178 n n O1B C4' LMT sing 179 n n O2B H2O1 LMT sing 180 n n O3B H3O1 LMT sing 181 n n O4' H4O1 LMT sing 182 n n O6B H6B LMT sing 183 n n C1' C2' LMT sing 184 n n C1' O1' LMT sing 185 n n C1' O5' LMT sing 186 n n C1' H1' LMT sing 187 n n C2' C3' LMT sing 188 n n C2' O2' LMT sing 189 n n C2' H2' LMT sing 190 n n C3' C4' LMT sing 191 n n C3' O3' LMT sing 192 n n C3' H3' LMT sing 193 n n C4' C5' LMT sing 194 n n C4' H4' LMT sing 195 n n C5' C6' LMT sing 196 n n C5' O5' LMT sing 197 n n C5' H5' LMT sing 198 n n C6' O6' LMT sing 199 n n C6' H6D LMT sing 200 n n C6' H6E LMT sing 201 n n O1' C1 LMT sing 202 n n O2' H2O2 LMT sing 203 n n O3' H3O2 LMT sing 204 n n O6' H6' LMT sing 205 n n C1 C2 LMT sing 206 n n C1 H12 LMT sing 207 n n C1 H11 LMT sing 208 n n C2 C3 LMT sing 209 n n C2 H22 LMT sing 210 n n C2 H21 LMT sing 211 n n C3 C4 LMT sing 212 n n C3 H32 LMT sing 213 n n C3 H31 LMT sing 214 n n C4 C5 LMT sing 215 n n C4 H42 LMT sing 216 n n C4 H41 LMT sing 217 n n C5 C6 LMT sing 218 n n C5 H52 LMT sing 219 n n C5 H51 LMT sing 220 n n C6 C7 LMT sing 221 n n C6 H62 LMT sing 222 n n C6 H61 LMT sing 223 n n C7 C8 LMT sing 224 n n C7 H72 LMT sing 225 n n C7 H71 LMT sing 226 n n C8 C9 LMT sing 227 n n C8 H82 LMT sing 228 n n C8 H81 LMT sing 229 n n C9 C10 LMT sing 230 n n C9 H92 LMT sing 231 n n C9 H91 LMT sing 232 n n C10 C11 LMT sing 233 n n C10 H102 LMT sing 234 n n C10 H101 LMT sing 235 n n C11 C12 LMT sing 236 n n C11 H112 LMT sing 237 n n C11 H111 LMT sing 238 n n C12 H123 LMT sing 239 n n C12 H122 LMT sing 240 n n C12 H121 LMT sing 241 n n # _atom_sites.entry_id 6YU4 _atom_sites.fract_transf_matrix[1][1] 0.02265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 701 701 NA NA . C 2 NA A 1 702 702 NA NA . D 3 PFF A 1 703 601 PFF PFF . E 4 PCW A 1 704 801 PCW PCW . F 5 LMT A 1 705 1453 LMT LMT . G 5 LMT A 1 706 1454 LMT LMT . H 5 LMT A 1 707 1455 LMT LMT . I 5 LMT A 1 708 1456 LMT LMT . J 6 SOG A 1 709 1452 SOG SOG . K 6 SOG A 1 710 1453 SOG SOG . L 5 LMT A 1 711 1 LMT LMT . M 5 LMT A 1 712 2 LMT LMT . N 7 HOH A 1 801 36 HOH HOH . N 7 HOH A 2 802 11 HOH HOH . N 7 HOH A 3 803 34 HOH HOH . N 7 HOH A 4 804 12 HOH HOH . N 7 HOH A 5 805 3 HOH HOH . N 7 HOH A 6 806 18 HOH HOH . N 7 HOH A 7 807 1 HOH HOH . N 7 HOH A 8 808 30 HOH HOH . N 7 HOH A 9 809 5 HOH HOH . N 7 HOH A 10 810 26 HOH HOH . N 7 HOH A 11 811 6 HOH HOH . N 7 HOH A 12 812 20 HOH HOH . N 7 HOH A 13 813 13 HOH HOH . N 7 HOH A 14 814 38 HOH HOH . N 7 HOH A 15 815 22 HOH HOH . N 7 HOH A 16 816 8 HOH HOH . N 7 HOH A 17 817 9 HOH HOH . N 7 HOH A 18 818 10 HOH HOH . N 7 HOH A 19 819 27 HOH HOH . N 7 HOH A 20 820 29 HOH HOH . N 7 HOH A 21 821 21 HOH HOH . N 7 HOH A 22 822 7 HOH HOH . N 7 HOH A 23 823 33 HOH HOH . N 7 HOH A 24 824 17 HOH HOH . N 7 HOH A 25 825 23 HOH HOH . N 7 HOH A 26 826 31 HOH HOH . N 7 HOH A 27 827 35 HOH HOH . N 7 HOH A 28 828 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . M 5 65.942 46.53 118.617 1 71.77 ? C1B LMT 712 A 1 HETATM 2 C C2B LMT . . . M 5 65.75 47.841 117.874 1 76.14 ? C2B LMT 712 A 1 HETATM 3 C C3B LMT . . . M 5 66.071 47.696 116.426 1 73.9 ? C3B LMT 712 A 1 HETATM 4 C C4B LMT . . . M 5 67.335 46.933 116.108 1 72.29 ? C4B LMT 712 A 1 HETATM 5 C C5B LMT . . . M 5 67.734 45.825 117.095 1 64.57 ? C5B LMT 712 A 1 HETATM 6 C C6B LMT . . . M 5 69.22 45.612 117.043 1 68.66 ? C6B LMT 712 A 1 HETATM 7 O O1B LMT . . . M 5 65.15 45.576 118.049 1 69.66 ? O1B LMT 712 A 1 HETATM 8 O O2B LMT . . . M 5 64.384 48.276 118.017 1 71.06 ? O2B LMT 712 A 1 HETATM 9 O O3B LMT . . . M 5 66.195 49.03 115.86 1 71.81 ? O3B LMT 712 A 1 HETATM 10 O O4' LMT . . . M 5 67.165 46.311 114.827 1 72.12 ? O4' LMT 712 A 1 HETATM 11 O O5B LMT . . . M 5 67.368 46.09 118.5 1 70.22 ? O5B LMT 712 A 1 HETATM 12 O O6B LMT . . . M 5 69.766 45.868 118.319 1 67.46 ? O6B LMT 712 A 1 HETATM 13 C C1' LMT . . . M 5 63.113 42.265 119.627 1 59.46 ? C1' LMT 712 A 1 HETATM 14 C C2' LMT . . . M 5 62.932 43.63 120.271 1 52.82 ? C2' LMT 712 A 1 HETATM 15 C C3' LMT . . . M 5 63.377 44.72 119.367 1 64.9 ? C3' LMT 712 A 1 HETATM 16 C C4' LMT . . . M 5 64.817 44.552 119 1 68 ? C4' LMT 712 A 1 HETATM 17 C C5' LMT . . . M 5 65.124 43.174 118.392 1 67.34 ? C5' LMT 712 A 1 HETATM 18 C C6' LMT . . . M 5 66.587 42.903 118.452 1 66.66 ? C6' LMT 712 A 1 HETATM 19 O O1' LMT . . . M 5 62.883 41.299 120.572 1 57.78 ? O1' LMT 712 A 1 HETATM 20 O O2' LMT . . . M 5 61.545 43.816 120.596 1 46.61 ? O2' LMT 712 A 1 HETATM 21 O O3' LMT . . . M 5 63.191 45.983 120.059 1 68.85 ? O3' LMT 712 A 1 HETATM 22 O O5' LMT . . . M 5 64.49 42.034 119.095 1 55.2 ? O5' LMT 712 A 1 HETATM 23 O O6' LMT . . . M 5 66.848 41.606 118.015 1 63.72 ? O6' LMT 712 A 1 HETATM 24 C C1 LMT . . . M 5 62.765 40.011 119.986 1 55.75 ? C1 LMT 712 A 1 HETATM 25 C C2 LMT . . . M 5 62.706 38.936 121.096 1 43.44 ? C2 LMT 712 A 1 HETATM 26 C C3 LMT . . . M 5 62.38 37.591 120.408 1 43.83 ? C3 LMT 712 A 1 HETATM 27 C C4 LMT . . . M 5 63 36.431 121.227 1 49.62 ? C4 LMT 712 A 1 HETATM 28 C C5 LMT . . . M 5 62.141 35.172 120.983 1 39.41 ? C5 LMT 712 A 1 HETATM 29 C C6 LMT . . . M 5 62.69 34.026 121.871 1 45.7 ? C6 LMT 712 A 1 HETATM 30 C C7 LMT . . . M 5 62.353 32.686 121.182 1 52.94 ? C7 LMT 712 A 1 HETATM 31 C C8 LMT . . . M 5 62.318 31.543 122.229 1 46.74 ? C8 LMT 712 A 1 HETATM 32 C C9 LMT . . . M 5 61.499 30.33 121.714 1 56.62 ? C9 LMT 712 A 1 HETATM 33 C C10 LMT . . . M 5 60.974 30.539 120.271 1 63.43 ? C10 LMT 712 A 1 HETATM 34 C C11 LMT . . . M 5 61.857 29.792 119.254 1 59.88 ? C11 LMT 712 A 1 HETATM 35 C C12 LMT . . . M 5 61.868 30.562 117.926 1 51.24 ? C12 LMT 712 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #