data_6YU5 # _model_server_result.job_id du4bN95x430X2agJNnnR8Q _model_server_result.datetime_utc '2024-10-14 09:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":518}' # _entry.id 6YU5 # _exptl.entry_id 6YU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 6YU5 _cell.length_a 44.16 _cell.length_b 216.03 _cell.length_c 50.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,EA 1 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc11 C O VAL . A VAL 501 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc12 B O GLY 26 B GLY 24 1_555 W NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 B O ALA 28 B ALA 26 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc14 B O VAL 29 B VAL 27 1_555 W NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc15 B OD1 ASN 33 B ASN 31 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 B O THR 233 B THR 231 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc17 B OG1 THR 233 B THR 231 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc18 B OD1 ASP 265 B ASP 263 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc19 B O ALA 322 B ALA 320 1_555 W NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc20 B OG SER 325 B SER 323 1_555 W NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc21 B OG SER 326 B SER 324 1_555 W NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc22 U O VAL . B VAL 501 1_555 V NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 211 n n C1B O1B LMT sing 212 n n C1B O5B LMT sing 213 n n C1B H1B LMT sing 214 n n C2B C3B LMT sing 215 n n C2B O2B LMT sing 216 n n C2B H2B LMT sing 217 n n C3B C4B LMT sing 218 n n C3B O3B LMT sing 219 n n C3B H3B LMT sing 220 n n C4B C5B LMT sing 221 n n C4B O4' LMT sing 222 n n C4B H4B LMT sing 223 n n C5B C6B LMT sing 224 n n C5B O5B LMT sing 225 n n C5B H5B LMT sing 226 n n C6B O6B LMT sing 227 n n C6B "H6'2" LMT sing 228 n n C6B "H6'1" LMT sing 229 n n O1B C4' LMT sing 230 n n O2B H2O1 LMT sing 231 n n O3B H3O1 LMT sing 232 n n O4' H4O1 LMT sing 233 n n O6B H6B LMT sing 234 n n C1' C2' LMT sing 235 n n C1' O1' LMT sing 236 n n C1' O5' LMT sing 237 n n C1' H1' LMT sing 238 n n C2' C3' LMT sing 239 n n C2' O2' LMT sing 240 n n C2' H2' LMT sing 241 n n C3' C4' LMT sing 242 n n C3' O3' LMT sing 243 n n C3' H3' LMT sing 244 n n C4' C5' LMT sing 245 n n C4' H4' LMT sing 246 n n C5' C6' LMT sing 247 n n C5' O5' LMT sing 248 n n C5' H5' LMT sing 249 n n C6' O6' LMT sing 250 n n C6' H6D LMT sing 251 n n C6' H6E LMT sing 252 n n O1' C1 LMT sing 253 n n O2' H2O2 LMT sing 254 n n O3' H3O2 LMT sing 255 n n O6' H6' LMT sing 256 n n C1 C2 LMT sing 257 n n C1 H12 LMT sing 258 n n C1 H11 LMT sing 259 n n C2 C3 LMT sing 260 n n C2 H22 LMT sing 261 n n C2 H21 LMT sing 262 n n C3 C4 LMT sing 263 n n C3 H32 LMT sing 264 n n C3 H31 LMT sing 265 n n C4 C5 LMT sing 266 n n C4 H42 LMT sing 267 n n C4 H41 LMT sing 268 n n C5 C6 LMT sing 269 n n C5 H52 LMT sing 270 n n C5 H51 LMT sing 271 n n C6 C7 LMT sing 272 n n C6 H62 LMT sing 273 n n C6 H61 LMT sing 274 n n C7 C8 LMT sing 275 n n C7 H72 LMT sing 276 n n C7 H71 LMT sing 277 n n C8 C9 LMT sing 278 n n C8 H82 LMT sing 279 n n C8 H81 LMT sing 280 n n C9 C10 LMT sing 281 n n C9 H92 LMT sing 282 n n C9 H91 LMT sing 283 n n C10 C11 LMT sing 284 n n C10 H102 LMT sing 285 n n C10 H101 LMT sing 286 n n C11 C12 LMT sing 287 n n C11 H112 LMT sing 288 n n C11 H111 LMT sing 289 n n C12 H123 LMT sing 290 n n C12 H122 LMT sing 291 n n C12 H121 LMT sing 292 n n # _atom_sites.entry_id 6YU5 _atom_sites.fract_transf_matrix[1][1] 0.022645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VAL A 1 501 2 VAL VAL . D 3 NA A 1 502 2 NA NA . E 3 NA A 1 503 4 NA NA . F 4 BNG A 1 504 2 BNG BNG . G 4 BNG A 1 505 4 BNG BNG . H 4 BNG A 1 506 5 BNG BNG . I 4 BNG A 1 507 8 BNG BNG . J 4 BNG A 1 508 9 BNG BNG . K 4 BNG A 1 509 10 BNG BNG . L 4 BNG A 1 510 14 BNG BNG . M 4 BNG A 1 511 20 BNG BNG . N 4 BNG A 1 512 21 BNG BNG . O 4 BNG A 1 513 22 BNG BNG . P 4 BNG A 1 514 26 BNG BNG . Q 4 BNG A 1 515 27 BNG BNG . R 4 BNG A 1 516 30 BNG BNG . S 5 LMT A 1 517 4 LMT LMT . T 5 LMT A 1 518 5 LMT LMT . U 2 VAL B 1 501 1 VAL VAL . V 3 NA B 1 502 1 NA NA . W 3 NA B 1 503 3 NA NA . X 4 BNG B 1 504 1 BNG BNG . Y 4 BNG B 1 505 13 BNG BNG . Z 4 BNG B 1 506 16 BNG BNG . AA 4 BNG B 1 507 19 BNG BNG . BA 4 BNG B 1 508 24 BNG BNG . CA 4 BNG B 1 509 28 BNG BNG . DA 4 BNG B 1 510 29 BNG BNG . EA 6 HOH A 1 601 48 HOH HOH . EA 6 HOH A 2 602 58 HOH HOH . EA 6 HOH A 3 603 24 HOH HOH . EA 6 HOH A 4 604 25 HOH HOH . EA 6 HOH A 5 605 112 HOH HOH . EA 6 HOH A 6 606 41 HOH HOH . EA 6 HOH A 7 607 2 HOH HOH . EA 6 HOH A 8 608 32 HOH HOH . EA 6 HOH A 9 609 86 HOH HOH . EA 6 HOH A 10 610 33 HOH HOH . EA 6 HOH A 11 611 45 HOH HOH . EA 6 HOH A 12 612 26 HOH HOH . EA 6 HOH A 13 613 46 HOH HOH . EA 6 HOH A 14 614 36 HOH HOH . EA 6 HOH A 15 615 1 HOH HOH . EA 6 HOH A 16 616 101 HOH HOH . EA 6 HOH A 17 617 34 HOH HOH . EA 6 HOH A 18 618 28 HOH HOH . EA 6 HOH A 19 619 61 HOH HOH . EA 6 HOH A 20 620 136 HOH HOH . EA 6 HOH A 21 621 30 HOH HOH . EA 6 HOH A 22 622 22 HOH HOH . EA 6 HOH A 23 623 35 HOH HOH . EA 6 HOH A 24 624 85 HOH HOH . EA 6 HOH A 25 625 128 HOH HOH . EA 6 HOH A 26 626 27 HOH HOH . EA 6 HOH A 27 627 82 HOH HOH . EA 6 HOH A 28 628 14 HOH HOH . EA 6 HOH A 29 629 76 HOH HOH . EA 6 HOH A 30 630 132 HOH HOH . EA 6 HOH A 31 631 100 HOH HOH . EA 6 HOH A 32 632 53 HOH HOH . EA 6 HOH A 33 633 115 HOH HOH . EA 6 HOH A 34 634 44 HOH HOH . EA 6 HOH A 35 635 102 HOH HOH . EA 6 HOH A 36 636 43 HOH HOH . EA 6 HOH A 37 637 79 HOH HOH . EA 6 HOH A 38 638 107 HOH HOH . FA 6 HOH B 1 601 131 HOH HOH . FA 6 HOH B 2 602 49 HOH HOH . FA 6 HOH B 3 603 40 HOH HOH . FA 6 HOH B 4 604 21 HOH HOH . FA 6 HOH B 5 605 52 HOH HOH . FA 6 HOH B 6 606 10 HOH HOH . FA 6 HOH B 7 607 69 HOH HOH . FA 6 HOH B 8 608 38 HOH HOH . FA 6 HOH B 9 609 12 HOH HOH . FA 6 HOH B 10 610 13 HOH HOH . FA 6 HOH B 11 611 18 HOH HOH . FA 6 HOH B 12 612 66 HOH HOH . FA 6 HOH B 13 613 94 HOH HOH . FA 6 HOH B 14 614 116 HOH HOH . FA 6 HOH B 15 615 39 HOH HOH . FA 6 HOH B 16 616 5 HOH HOH . FA 6 HOH B 17 617 93 HOH HOH . FA 6 HOH B 18 618 23 HOH HOH . FA 6 HOH B 19 619 92 HOH HOH . FA 6 HOH B 20 620 7 HOH HOH . FA 6 HOH B 21 621 54 HOH HOH . FA 6 HOH B 22 622 6 HOH HOH . FA 6 HOH B 23 623 65 HOH HOH . FA 6 HOH B 24 624 122 HOH HOH . FA 6 HOH B 25 625 104 HOH HOH . FA 6 HOH B 26 626 106 HOH HOH . FA 6 HOH B 27 627 73 HOH HOH . FA 6 HOH B 28 628 135 HOH HOH . FA 6 HOH B 29 629 4 HOH HOH . FA 6 HOH B 30 630 74 HOH HOH . FA 6 HOH B 31 631 17 HOH HOH . FA 6 HOH B 32 632 125 HOH HOH . FA 6 HOH B 33 633 134 HOH HOH . FA 6 HOH B 34 634 16 HOH HOH . FA 6 HOH B 35 635 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1' LMT . . . T 5 14.747 -38.166 -14.998 1 70.2 ? O1' LMT 518 A 1 HETATM 2 C C1 LMT . . . T 5 14.625 -38.941 -13.808 1 65.78 ? C1 LMT 518 A 1 HETATM 3 C C2 LMT . . . T 5 14.333 -40.422 -14.171 1 65.34 ? C2 LMT 518 A 1 HETATM 4 C C3 LMT . . . T 5 13.529 -41.081 -13.018 1 61.29 ? C3 LMT 518 A 1 HETATM 5 C C4 LMT . . . T 5 12.007 -40.933 -13.307 1 59.65 ? C4 LMT 518 A 1 HETATM 6 C C5 LMT . . . T 5 11.193 -41.24 -12.025 1 58.99 ? C5 LMT 518 A 1 HETATM 7 C C6 LMT . . . T 5 11.036 -42.778 -11.856 1 58.37 ? C6 LMT 518 A 1 HETATM 8 C C7 LMT . . . T 5 10.38 -43.075 -10.485 1 59.61 ? C7 LMT 518 A 1 HETATM 9 C C8 LMT . . . T 5 10.787 -44.489 -10.001 1 60.34 ? C8 LMT 518 A 1 HETATM 10 C C9 LMT . . . T 5 10.666 -44.557 -8.464 1 60.65 ? C9 LMT 518 A 1 HETATM 11 C C10 LMT . . . T 5 11.2 -45.915 -7.97 1 62.77 ? C10 LMT 518 A 1 HETATM 12 C C11 LMT . . . T 5 11.549 -45.834 -6.476 1 63.34 ? C11 LMT 518 A 1 HETATM 13 C C12 LMT . . . T 5 12.28 -47.119 -6.073 1 59.85 ? C12 LMT 518 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 609 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #