data_6YU6
#
_model_server_result.job_id            aOEtWiDGNF_gg0sg6sDRIA 
_model_server_result.datetime_utc      '2024-11-22 12:21:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    6YU6 
#
_exptl.entry_id    6YU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              131.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LEUCINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.05 
_cell.angle_gamma         90 
_cell.entry_id            6YU6 
_cell.length_a            44.23 
_cell.length_b            215.56 
_cell.length_c            50.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 26 A GLY 24 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A O ALA 28 A ALA 26 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc3 A O VAL 29 A VAL 27 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc5 A O THR 233 A THR 231 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc8 A O ALA 322 A ALA 320 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc9 A OG SER 325 A SER 323 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc10 A OG SER 326 A SER 324 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc11 D NA NA . A NA 502 1_555 E OXT LEU . A LEU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc12 B O GLY 26 B GLY 24 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc13 B O ALA 28 B ALA 26 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc14 B O VAL 29 B VAL 27 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc15 B OD1 ASN 33 B ASN 31 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc16 B O THR 233 B THR 231 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc17 B OG1 THR 233 B THR 231 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc18 B OD1 ASP 265 B ASP 263 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc19 B O ALA 322 B ALA 320 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc20 B OG SER 325 B SER 323 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc21 B OG SER 326 B SER 324 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc22 K NA NA . B NA 501 1_555 M OXT LEU . B LEU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'C6 H13 N O2' 
_chem_comp.formula_weight    131.173 
_chem_comp.id                LEU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LEUCINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LEU sing 139 n n 
N H LEU sing 140 n n 
N H2 LEU sing 141 n n 
CA C LEU sing 142 n n 
CA CB LEU sing 143 n n 
CA HA LEU sing 144 n n 
C O LEU doub 145 n n 
C OXT LEU sing 146 n n 
CB CG LEU sing 147 n n 
CB HB2 LEU sing 148 n n 
CB HB3 LEU sing 149 n n 
CG CD1 LEU sing 150 n n 
CG CD2 LEU sing 151 n n 
CG HG LEU sing 152 n n 
CD1 HD11 LEU sing 153 n n 
CD1 HD12 LEU sing 154 n n 
CD1 HD13 LEU sing 155 n n 
CD2 HD21 LEU sing 156 n n 
CD2 HD22 LEU sing 157 n n 
CD2 HD23 LEU sing 158 n n 
OXT HXT LEU sing 159 n n 
#
_atom_sites.entry_id                     6YU6 
_atom_sites.fract_transf_matrix[1][1]    0.022609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 501 1 NA NA . 
D 2 NA A 1 502 2 NA NA . 
E 3 LEU A 1 503 601 LEU LEU . 
F 4 LMT A 1 504 3 LMT LMT . 
G 4 LMT A 1 505 4 LMT LMT . 
H 4 LMT A 1 506 5 LMT LMT . 
I 5 SOG A 1 507 1452 SOG SOG . 
J 5 SOG A 1 508 1456 SOG SOG . 
K 2 NA B 1 501 3 NA NA . 
L 2 NA B 1 502 4 NA NA . 
M 3 LEU B 1 503 601 LEU LEU . 
N 4 LMT B 1 504 2 LMT LMT . 
O 5 SOG B 1 505 1454 SOG SOG . 
P 5 SOG B 1 506 1455 SOG SOG . 
Q 6 HOH A 1 601 5 HOH HOH . 
Q 6 HOH A 2 602 17 HOH HOH . 
Q 6 HOH A 3 603 29 HOH HOH . 
Q 6 HOH A 4 604 37 HOH HOH . 
Q 6 HOH A 5 605 4 HOH HOH . 
Q 6 HOH A 6 606 20 HOH HOH . 
Q 6 HOH A 7 607 18 HOH HOH . 
Q 6 HOH A 8 608 40 HOH HOH . 
Q 6 HOH A 9 609 36 HOH HOH . 
Q 6 HOH A 10 610 50 HOH HOH . 
Q 6 HOH A 11 611 3 HOH HOH . 
Q 6 HOH A 12 612 19 HOH HOH . 
Q 6 HOH A 13 613 39 HOH HOH . 
Q 6 HOH A 14 614 1 HOH HOH . 
Q 6 HOH A 15 615 11 HOH HOH . 
Q 6 HOH A 16 616 45 HOH HOH . 
Q 6 HOH A 17 617 34 HOH HOH . 
Q 6 HOH A 18 618 16 HOH HOH . 
Q 6 HOH A 19 619 38 HOH HOH . 
Q 6 HOH A 20 620 33 HOH HOH . 
Q 6 HOH A 21 621 14 HOH HOH . 
Q 6 HOH A 22 622 46 HOH HOH . 
Q 6 HOH A 23 623 41 HOH HOH . 
Q 6 HOH A 24 624 31 HOH HOH . 
Q 6 HOH A 25 625 42 HOH HOH . 
Q 6 HOH A 26 626 47 HOH HOH . 
Q 6 HOH A 27 627 26 HOH HOH . 
R 6 HOH B 1 601 49 HOH HOH . 
R 6 HOH B 2 602 24 HOH HOH . 
R 6 HOH B 3 603 8 HOH HOH . 
R 6 HOH B 4 604 10 HOH HOH . 
R 6 HOH B 5 605 51 HOH HOH . 
R 6 HOH B 6 606 22 HOH HOH . 
R 6 HOH B 7 607 9 HOH HOH . 
R 6 HOH B 8 608 25 HOH HOH . 
R 6 HOH B 9 609 2 HOH HOH . 
R 6 HOH B 10 610 21 HOH HOH . 
R 6 HOH B 11 611 12 HOH HOH . 
R 6 HOH B 12 612 6 HOH HOH . 
R 6 HOH B 13 613 43 HOH HOH . 
R 6 HOH B 14 614 7 HOH HOH . 
R 6 HOH B 15 615 35 HOH HOH . 
R 6 HOH B 16 616 44 HOH HOH . 
R 6 HOH B 17 617 15 HOH HOH . 
R 6 HOH B 18 618 48 HOH HOH . 
R 6 HOH B 19 619 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LEU . . . E 3 -0.006 29.146 -21.962 1 37.34 ? N LEU 503 A 1 
HETATM 2 C CA LEU . . . E 3 -0.498 27.929 -22.587 1 39.94 ? CA LEU 503 A 1 
HETATM 3 C C LEU . . . E 3 0.446 27.485 -23.701 1 34.46 ? C LEU 503 A 1 
HETATM 4 O O LEU . . . E 3 0.228 26.409 -24.316 1 36.29 ? O LEU 503 A 1 
HETATM 5 C CB LEU . . . E 3 -1.898 28.139 -23.157 1 39.99 ? CB LEU 503 A 1 
HETATM 6 C CG LEU . . . E 3 -2.809 28.777 -22.115 1 32.53 ? CG LEU 503 A 1 
HETATM 7 C CD1 LEU . . . E 3 -4.161 29.022 -22.775 1 28.21 ? CD1 LEU 503 A 1 
HETATM 8 C CD2 LEU . . . E 3 -2.987 27.826 -20.933 1 31.21 ? CD2 LEU 503 A 1 
HETATM 9 O OXT LEU . . . E 3 1.435 28.196 -24.01 1 33.94 ? OXT LEU 503 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#