data_6YU6
#
_model_server_result.job_id            1l-99fWW1pVtgivXCgnNQA 
_model_server_result.datetime_utc      '2024-10-14 09:24:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    6YU6 
#
_exptl.entry_id    6YU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.05 
_cell.angle_gamma         90 
_cell.entry_id            6YU6 
_cell.length_a            44.23 
_cell.length_b            215.56 
_cell.length_c            50.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 26 A GLY 24 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 A O ALA 28 A ALA 26 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc3 A O VAL 29 A VAL 27 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc5 A O THR 233 A THR 231 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc8 A O ALA 322 A ALA 320 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc9 A OG SER 325 A SER 323 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc10 A OG SER 326 A SER 324 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc11 D NA NA . A NA 502 1_555 E OXT LEU . A LEU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc12 B O GLY 26 B GLY 24 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc13 B O ALA 28 B ALA 26 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc14 B O VAL 29 B VAL 27 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc15 B OD1 ASN 33 B ASN 31 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc16 B O THR 233 B THR 231 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc17 B OG1 THR 233 B THR 231 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc18 B OD1 ASP 265 B ASP 263 1_555 K NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc19 B O ALA 322 B ALA 320 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc20 B OG SER 325 B SER 323 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc21 B OG SER 326 B SER 324 1_555 L NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc22 K NA NA . B NA 501 1_555 M OXT LEU . B LEU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 160 n n 
C1B O1B LMT sing 161 n n 
C1B O5B LMT sing 162 n n 
C1B H1B LMT sing 163 n n 
C2B C3B LMT sing 164 n n 
C2B O2B LMT sing 165 n n 
C2B H2B LMT sing 166 n n 
C3B C4B LMT sing 167 n n 
C3B O3B LMT sing 168 n n 
C3B H3B LMT sing 169 n n 
C4B C5B LMT sing 170 n n 
C4B O4' LMT sing 171 n n 
C4B H4B LMT sing 172 n n 
C5B C6B LMT sing 173 n n 
C5B O5B LMT sing 174 n n 
C5B H5B LMT sing 175 n n 
C6B O6B LMT sing 176 n n 
C6B "H6'2" LMT sing 177 n n 
C6B "H6'1" LMT sing 178 n n 
O1B C4' LMT sing 179 n n 
O2B H2O1 LMT sing 180 n n 
O3B H3O1 LMT sing 181 n n 
O4' H4O1 LMT sing 182 n n 
O6B H6B LMT sing 183 n n 
C1' C2' LMT sing 184 n n 
C1' O1' LMT sing 185 n n 
C1' O5' LMT sing 186 n n 
C1' H1' LMT sing 187 n n 
C2' C3' LMT sing 188 n n 
C2' O2' LMT sing 189 n n 
C2' H2' LMT sing 190 n n 
C3' C4' LMT sing 191 n n 
C3' O3' LMT sing 192 n n 
C3' H3' LMT sing 193 n n 
C4' C5' LMT sing 194 n n 
C4' H4' LMT sing 195 n n 
C5' C6' LMT sing 196 n n 
C5' O5' LMT sing 197 n n 
C5' H5' LMT sing 198 n n 
C6' O6' LMT sing 199 n n 
C6' H6D LMT sing 200 n n 
C6' H6E LMT sing 201 n n 
O1' C1 LMT sing 202 n n 
O2' H2O2 LMT sing 203 n n 
O3' H3O2 LMT sing 204 n n 
O6' H6' LMT sing 205 n n 
C1 C2 LMT sing 206 n n 
C1 H12 LMT sing 207 n n 
C1 H11 LMT sing 208 n n 
C2 C3 LMT sing 209 n n 
C2 H22 LMT sing 210 n n 
C2 H21 LMT sing 211 n n 
C3 C4 LMT sing 212 n n 
C3 H32 LMT sing 213 n n 
C3 H31 LMT sing 214 n n 
C4 C5 LMT sing 215 n n 
C4 H42 LMT sing 216 n n 
C4 H41 LMT sing 217 n n 
C5 C6 LMT sing 218 n n 
C5 H52 LMT sing 219 n n 
C5 H51 LMT sing 220 n n 
C6 C7 LMT sing 221 n n 
C6 H62 LMT sing 222 n n 
C6 H61 LMT sing 223 n n 
C7 C8 LMT sing 224 n n 
C7 H72 LMT sing 225 n n 
C7 H71 LMT sing 226 n n 
C8 C9 LMT sing 227 n n 
C8 H82 LMT sing 228 n n 
C8 H81 LMT sing 229 n n 
C9 C10 LMT sing 230 n n 
C9 H92 LMT sing 231 n n 
C9 H91 LMT sing 232 n n 
C10 C11 LMT sing 233 n n 
C10 H102 LMT sing 234 n n 
C10 H101 LMT sing 235 n n 
C11 C12 LMT sing 236 n n 
C11 H112 LMT sing 237 n n 
C11 H111 LMT sing 238 n n 
C12 H123 LMT sing 239 n n 
C12 H122 LMT sing 240 n n 
C12 H121 LMT sing 241 n n 
#
_atom_sites.entry_id                     6YU6 
_atom_sites.fract_transf_matrix[1][1]    0.022609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019932 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 501 1 NA NA . 
D 2 NA A 1 502 2 NA NA . 
E 3 LEU A 1 503 601 LEU LEU . 
F 4 LMT A 1 504 3 LMT LMT . 
G 4 LMT A 1 505 4 LMT LMT . 
H 4 LMT A 1 506 5 LMT LMT . 
I 5 SOG A 1 507 1452 SOG SOG . 
J 5 SOG A 1 508 1456 SOG SOG . 
K 2 NA B 1 501 3 NA NA . 
L 2 NA B 1 502 4 NA NA . 
M 3 LEU B 1 503 601 LEU LEU . 
N 4 LMT B 1 504 2 LMT LMT . 
O 5 SOG B 1 505 1454 SOG SOG . 
P 5 SOG B 1 506 1455 SOG SOG . 
Q 6 HOH A 1 601 5 HOH HOH . 
Q 6 HOH A 2 602 17 HOH HOH . 
Q 6 HOH A 3 603 29 HOH HOH . 
Q 6 HOH A 4 604 37 HOH HOH . 
Q 6 HOH A 5 605 4 HOH HOH . 
Q 6 HOH A 6 606 20 HOH HOH . 
Q 6 HOH A 7 607 18 HOH HOH . 
Q 6 HOH A 8 608 40 HOH HOH . 
Q 6 HOH A 9 609 36 HOH HOH . 
Q 6 HOH A 10 610 50 HOH HOH . 
Q 6 HOH A 11 611 3 HOH HOH . 
Q 6 HOH A 12 612 19 HOH HOH . 
Q 6 HOH A 13 613 39 HOH HOH . 
Q 6 HOH A 14 614 1 HOH HOH . 
Q 6 HOH A 15 615 11 HOH HOH . 
Q 6 HOH A 16 616 45 HOH HOH . 
Q 6 HOH A 17 617 34 HOH HOH . 
Q 6 HOH A 18 618 16 HOH HOH . 
Q 6 HOH A 19 619 38 HOH HOH . 
Q 6 HOH A 20 620 33 HOH HOH . 
Q 6 HOH A 21 621 14 HOH HOH . 
Q 6 HOH A 22 622 46 HOH HOH . 
Q 6 HOH A 23 623 41 HOH HOH . 
Q 6 HOH A 24 624 31 HOH HOH . 
Q 6 HOH A 25 625 42 HOH HOH . 
Q 6 HOH A 26 626 47 HOH HOH . 
Q 6 HOH A 27 627 26 HOH HOH . 
R 6 HOH B 1 601 49 HOH HOH . 
R 6 HOH B 2 602 24 HOH HOH . 
R 6 HOH B 3 603 8 HOH HOH . 
R 6 HOH B 4 604 10 HOH HOH . 
R 6 HOH B 5 605 51 HOH HOH . 
R 6 HOH B 6 606 22 HOH HOH . 
R 6 HOH B 7 607 9 HOH HOH . 
R 6 HOH B 8 608 25 HOH HOH . 
R 6 HOH B 9 609 2 HOH HOH . 
R 6 HOH B 10 610 21 HOH HOH . 
R 6 HOH B 11 611 12 HOH HOH . 
R 6 HOH B 12 612 6 HOH HOH . 
R 6 HOH B 13 613 43 HOH HOH . 
R 6 HOH B 14 614 7 HOH HOH . 
R 6 HOH B 15 615 35 HOH HOH . 
R 6 HOH B 16 616 44 HOH HOH . 
R 6 HOH B 17 617 15 HOH HOH . 
R 6 HOH B 18 618 48 HOH HOH . 
R 6 HOH B 19 619 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . F 4 -11.39 3.732 -34.687 1 52.22 ? C1B LMT 504 A 1 
HETATM 2 C C2B LMT . . . F 4 -11.384 2.342 -35.302 1 60 ? C2B LMT 504 A 1 
HETATM 3 C C3B LMT . . . F 4 -10.028 1.976 -35.796 1 60.64 ? C3B LMT 504 A 1 
HETATM 4 C C4B LMT . . . F 4 -9.42 3.048 -36.656 1 60.95 ? C4B LMT 504 A 1 
HETATM 5 C C5B LMT . . . F 4 -9.502 4.413 -35.963 1 49.16 ? C5B LMT 504 A 1 
HETATM 6 C C6B LMT . . . F 4 -8.852 5.48 -36.792 1 53.08 ? C6B LMT 504 A 1 
HETATM 7 O O1B LMT . . . F 4 -10.459 3.723 -33.699 1 47.94 ? O1B LMT 504 A 1 
HETATM 8 O O2B LMT . . . F 4 -11.777 1.391 -34.298 1 56.79 ? O2B LMT 504 A 1 
HETATM 9 O O3B LMT . . . F 4 -10.112 0.736 -36.551 1 65.92 ? O3B LMT 504 A 1 
HETATM 10 O O4' LMT . . . F 4 -8.049 2.726 -36.92 1 62.44 ? O4' LMT 504 A 1 
HETATM 11 O O5B LMT . . . F 4 -10.903 4.754 -35.665 1 50.44 ? O5B LMT 504 A 1 
HETATM 12 O O6B LMT . . . F 4 -7.731 5.96 -36.085 1 51.57 ? O6B LMT 504 A 1 
HETATM 13 C C1' LMT . . . F 4 -10.446 4.642 -29.662 1 47.65 ? C1' LMT 504 A 1 
HETATM 14 C C2' LMT . . . F 4 -11.272 3.444 -30.107 1 44.45 ? C2' LMT 504 A 1 
HETATM 15 C C3' LMT . . . F 4 -10.948 3.04 -31.506 1 48.99 ? C3' LMT 504 A 1 
HETATM 16 C C4' LMT . . . F 4 -10.996 4.19 -32.459 1 47.68 ? C4' LMT 504 A 1 
HETATM 17 C C5' LMT . . . F 4 -10.142 5.352 -31.949 1 45.34 ? C5' LMT 504 A 1 
HETATM 18 C C6' LMT . . . F 4 -10.156 6.498 -32.899 1 41.59 ? C6' LMT 504 A 1 
HETATM 19 O O1' LMT . . . F 4 -10.795 5.006 -28.384 1 55.09 ? O1' LMT 504 A 1 
HETATM 20 O O2' LMT . . . F 4 -10.976 2.352 -29.229 1 56.01 ? O2' LMT 504 A 1 
HETATM 21 O O3' LMT . . . F 4 -11.882 2.021 -31.952 1 59.09 ? O3' LMT 504 A 1 
HETATM 22 O O5' LMT . . . F 4 -10.6 5.789 -30.61 1 46.88 ? O5' LMT 504 A 1 
HETATM 23 O O6' LMT . . . F 4 -8.919 7.135 -32.859 1 47.05 ? O6' LMT 504 A 1 
HETATM 24 C C1 LMT . . . F 4 -9.802 4.677 -27.416 1 49.25 ? C1 LMT 504 A 1 
HETATM 25 C C2 LMT . . . F 4 -10.415 4.753 -25.994 1 47.6 ? C2 LMT 504 A 1 
HETATM 26 C C3 LMT . . . F 4 -9.829 3.605 -25.131 1 51.35 ? C3 LMT 504 A 1 
HETATM 27 C C4 LMT . . . F 4 -8.416 4.012 -24.62 1 47.19 ? C4 LMT 504 A 1 
HETATM 28 C C5 LMT . . . F 4 -8.541 5.205 -23.64 1 39.39 ? C5 LMT 504 A 1 
HETATM 29 C C6 LMT . . . F 4 -7.122 5.727 -23.274 1 50.27 ? C6 LMT 504 A 1 
HETATM 30 C C7 LMT . . . F 4 -6.665 6.733 -24.358 1 58.22 ? C7 LMT 504 A 1 
HETATM 31 C C8 LMT . . . F 4 -5.644 7.741 -23.769 1 51.15 ? C8 LMT 504 A 1 
HETATM 32 C C9 LMT . . . F 4 -4.201 7.304 -24.105 1 50.66 ? C9 LMT 504 A 1 
HETATM 33 C C10 LMT . . . F 4 -3.754 7.932 -25.44 1 40.4 ? C10 LMT 504 A 1 
HETATM 34 C C11 LMT . . . F 4 -4.036 6.964 -26.598 1 43.83 ? C11 LMT 504 A 1 
HETATM 35 C C12 LMT . . . F 4 -3.554 5.552 -26.242 1 43.7 ? C12 LMT 504 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#