data_6YU7 # _model_server_result.job_id 1GnKEb6UGUviGo0sT2inEA _model_server_result.datetime_utc '2024-10-14 09:18:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6YU7 # _exptl.entry_id 6YU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.8 _cell.angle_gamma 90 _cell.entry_id 6YU7 _cell.length_a 44.1 _cell.length_b 49.9 _cell.length_c 110.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc11 E NA NA . A NA 504 1_555 J O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 F NA NA . A NA 505 1_555 G OXT TYR . A TYR 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 211 n n C1B O1B LMT sing 212 n n C1B O5B LMT sing 213 n n C1B H1B LMT sing 214 n n C2B C3B LMT sing 215 n n C2B O2B LMT sing 216 n n C2B H2B LMT sing 217 n n C3B C4B LMT sing 218 n n C3B O3B LMT sing 219 n n C3B H3B LMT sing 220 n n C4B C5B LMT sing 221 n n C4B O4' LMT sing 222 n n C4B H4B LMT sing 223 n n C5B C6B LMT sing 224 n n C5B O5B LMT sing 225 n n C5B H5B LMT sing 226 n n C6B O6B LMT sing 227 n n C6B "H6'2" LMT sing 228 n n C6B "H6'1" LMT sing 229 n n O1B C4' LMT sing 230 n n O2B H2O1 LMT sing 231 n n O3B H3O1 LMT sing 232 n n O4' H4O1 LMT sing 233 n n O6B H6B LMT sing 234 n n C1' C2' LMT sing 235 n n C1' O1' LMT sing 236 n n C1' O5' LMT sing 237 n n C1' H1' LMT sing 238 n n C2' C3' LMT sing 239 n n C2' O2' LMT sing 240 n n C2' H2' LMT sing 241 n n C3' C4' LMT sing 242 n n C3' O3' LMT sing 243 n n C3' H3' LMT sing 244 n n C4' C5' LMT sing 245 n n C4' H4' LMT sing 246 n n C5' C6' LMT sing 247 n n C5' O5' LMT sing 248 n n C5' H5' LMT sing 249 n n C6' O6' LMT sing 250 n n C6' H6D LMT sing 251 n n C6' H6E LMT sing 252 n n O1' C1 LMT sing 253 n n O2' H2O2 LMT sing 254 n n O3' H3O2 LMT sing 255 n n O6' H6' LMT sing 256 n n C1 C2 LMT sing 257 n n C1 H12 LMT sing 258 n n C1 H11 LMT sing 259 n n C2 C3 LMT sing 260 n n C2 H22 LMT sing 261 n n C2 H21 LMT sing 262 n n C3 C4 LMT sing 263 n n C3 H32 LMT sing 264 n n C3 H31 LMT sing 265 n n C4 C5 LMT sing 266 n n C4 H42 LMT sing 267 n n C4 H41 LMT sing 268 n n C5 C6 LMT sing 269 n n C5 H52 LMT sing 270 n n C5 H51 LMT sing 271 n n C6 C7 LMT sing 272 n n C6 H62 LMT sing 273 n n C6 H61 LMT sing 274 n n C7 C8 LMT sing 275 n n C7 H72 LMT sing 276 n n C7 H71 LMT sing 277 n n C8 C9 LMT sing 278 n n C8 H82 LMT sing 279 n n C8 H81 LMT sing 280 n n C9 C10 LMT sing 281 n n C9 H92 LMT sing 282 n n C9 H91 LMT sing 283 n n C10 C11 LMT sing 284 n n C10 H102 LMT sing 285 n n C10 H101 LMT sing 286 n n C11 C12 LMT sing 287 n n C11 H112 LMT sing 288 n n C11 H111 LMT sing 289 n n C12 H123 LMT sing 290 n n C12 H122 LMT sing 291 n n C12 H121 LMT sing 292 n n # _atom_sites.entry_id 6YU7 _atom_sites.fract_transf_matrix[1][1] 0.022676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMT A 1 501 501 LMT LMT . C 2 LMT A 1 502 601 LMT LMT . D 2 LMT A 1 503 701 LMT LMT . E 3 NA A 1 504 1 NA NA . F 3 NA A 1 505 2 NA NA . G 4 TYR A 1 506 601 TYR TYR . H 5 BNG A 1 507 1 BNG BNG . I 5 BNG A 1 508 2 BNG BNG . J 6 HOH A 1 601 9 HOH HOH . J 6 HOH A 2 602 25 HOH HOH . J 6 HOH A 3 603 58 HOH HOH . J 6 HOH A 4 604 16 HOH HOH . J 6 HOH A 5 605 46 HOH HOH . J 6 HOH A 6 606 42 HOH HOH . J 6 HOH A 7 607 50 HOH HOH . J 6 HOH A 8 608 40 HOH HOH . J 6 HOH A 9 609 12 HOH HOH . J 6 HOH A 10 610 64 HOH HOH . J 6 HOH A 11 611 10 HOH HOH . J 6 HOH A 12 612 44 HOH HOH . J 6 HOH A 13 613 32 HOH HOH . J 6 HOH A 14 614 21 HOH HOH . J 6 HOH A 15 615 43 HOH HOH . J 6 HOH A 16 616 6 HOH HOH . J 6 HOH A 17 617 41 HOH HOH . J 6 HOH A 18 618 18 HOH HOH . J 6 HOH A 19 619 14 HOH HOH . J 6 HOH A 20 620 33 HOH HOH . J 6 HOH A 21 621 54 HOH HOH . J 6 HOH A 22 622 35 HOH HOH . J 6 HOH A 23 623 7 HOH HOH . J 6 HOH A 24 624 38 HOH HOH . J 6 HOH A 25 625 20 HOH HOH . J 6 HOH A 26 626 15 HOH HOH . J 6 HOH A 27 627 49 HOH HOH . J 6 HOH A 28 628 30 HOH HOH . J 6 HOH A 29 629 3 HOH HOH . J 6 HOH A 30 630 60 HOH HOH . J 6 HOH A 31 631 53 HOH HOH . J 6 HOH A 32 632 57 HOH HOH . J 6 HOH A 33 633 34 HOH HOH . J 6 HOH A 34 634 8 HOH HOH . J 6 HOH A 35 635 61 HOH HOH . J 6 HOH A 36 636 24 HOH HOH . J 6 HOH A 37 637 2 HOH HOH . J 6 HOH A 38 638 37 HOH HOH . J 6 HOH A 39 639 19 HOH HOH . J 6 HOH A 40 640 17 HOH HOH . J 6 HOH A 41 641 59 HOH HOH . J 6 HOH A 42 642 23 HOH HOH . J 6 HOH A 43 643 5 HOH HOH . J 6 HOH A 44 644 62 HOH HOH . J 6 HOH A 45 645 45 HOH HOH . J 6 HOH A 46 646 51 HOH HOH . J 6 HOH A 47 647 11 HOH HOH . J 6 HOH A 48 648 22 HOH HOH . J 6 HOH A 49 649 36 HOH HOH . J 6 HOH A 50 650 4 HOH HOH . J 6 HOH A 51 651 52 HOH HOH . J 6 HOH A 52 652 26 HOH HOH . J 6 HOH A 53 653 31 HOH HOH . J 6 HOH A 54 654 56 HOH HOH . J 6 HOH A 55 655 47 HOH HOH . J 6 HOH A 56 656 13 HOH HOH . J 6 HOH A 57 657 66 HOH HOH . J 6 HOH A 58 658 63 HOH HOH . J 6 HOH A 59 659 27 HOH HOH . J 6 HOH A 60 660 65 HOH HOH . J 6 HOH A 61 661 48 HOH HOH . J 6 HOH A 62 662 55 HOH HOH . J 6 HOH A 63 663 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . B 2 28.79 41.714 114.117 1 59.92 ? C1B LMT 501 A 1 HETATM 2 C C2B LMT . . . B 2 28.95 43.15 113.64 1 63.49 ? C2B LMT 501 A 1 HETATM 3 C C3B LMT . . . B 2 30.328 43.675 113.828 1 70.4 ? C3B LMT 501 A 1 HETATM 4 C C4B LMT . . . B 2 30.864 43.432 115.208 1 65.83 ? C4B LMT 501 A 1 HETATM 5 C C5B LMT . . . B 2 30.701 41.98 115.669 1 62.07 ? C5B LMT 501 A 1 HETATM 6 C C6B LMT . . . B 2 31.078 41.859 117.118 1 49.71 ? C6B LMT 501 A 1 HETATM 7 O O1B LMT . . . B 2 29.405 40.874 113.234 1 61.1 ? O1B LMT 501 A 1 HETATM 8 O O2B LMT . . . B 2 28.625 43.203 112.24 1 75.06 ? O2B LMT 501 A 1 HETATM 9 O O3B LMT . . . B 2 30.311 45.109 113.58 1 69.1 ? O3B LMT 501 A 1 HETATM 10 O O4' LMT . . . B 2 32.258 43.755 115.213 1 65.29 ? O4' LMT 501 A 1 HETATM 11 O O5B LMT . . . B 2 29.32 41.496 115.506 1 64.81 ? O5B LMT 501 A 1 HETATM 12 O O6B LMT . . . B 2 31.833 42.98 117.514 1 59.9 ? O6B LMT 501 A 1 HETATM 13 C C1' LMT . . . B 2 28.394 36.899 112.287 1 56.21 ? C1' LMT 501 A 1 HETATM 14 C C2' LMT . . . B 2 27.32 37.791 112.881 1 58.79 ? C2' LMT 501 A 1 HETATM 15 C C3' LMT . . . B 2 27.693 39.218 112.71 1 65.23 ? C3' LMT 501 A 1 HETATM 16 C C4' LMT . . . B 2 28.979 39.512 113.432 1 59.38 ? C4' LMT 501 A 1 HETATM 17 C C5' LMT . . . B 2 30.094 38.588 112.921 1 62.97 ? C5' LMT 501 A 1 HETATM 18 C C6' LMT . . . B 2 31.332 38.75 113.735 1 59.38 ? C6' LMT 501 A 1 HETATM 19 O O1' LMT . . . B 2 28.043 35.586 112.469 1 53.74 ? O1' LMT 501 A 1 HETATM 20 O O2' LMT . . . B 2 26.069 37.553 112.22 1 64.31 ? O2' LMT 501 A 1 HETATM 21 O O3' LMT . . . B 2 26.561 39.999 113.184 1 53.57 ? O3' LMT 501 A 1 HETATM 22 O O5' LMT . . . B 2 29.717 37.152 112.937 1 56.26 ? O5' LMT 501 A 1 HETATM 23 O O6' LMT . . . B 2 32.226 37.734 113.402 1 52.03 ? O6' LMT 501 A 1 HETATM 24 C C1 LMT . . . B 2 29.114 34.687 112.201 1 44.04 ? C1 LMT 501 A 1 HETATM 25 C C2 LMT . . . B 2 29.068 33.522 113.224 1 44.72 ? C2 LMT 501 A 1 HETATM 26 C C3 LMT . . . B 2 28.404 32.292 112.552 1 47.56 ? C3 LMT 501 A 1 HETATM 27 C C4 LMT . . . B 2 29.425 31.642 111.575 1 40.27 ? C4 LMT 501 A 1 HETATM 28 C C5 LMT . . . B 2 29.099 30.136 111.423 1 41.78 ? C5 LMT 501 A 1 HETATM 29 C C6 LMT . . . B 2 30.421 29.34 111.239 1 39.68 ? C6 LMT 501 A 1 HETATM 30 C C7 LMT . . . B 2 30.965 28.902 112.621 1 41.52 ? C7 LMT 501 A 1 HETATM 31 C C8 LMT . . . B 2 31.396 27.417 112.543 1 51.13 ? C8 LMT 501 A 1 HETATM 32 C C9 LMT . . . B 2 31.964 26.966 113.906 1 49.36 ? C9 LMT 501 A 1 HETATM 33 C C10 LMT . . . B 2 33.484 27.216 113.942 1 43.35 ? C10 LMT 501 A 1 HETATM 34 C C11 LMT . . . B 2 34.026 26.846 115.331 1 52.75 ? C11 LMT 501 A 1 HETATM 35 C C12 LMT . . . B 2 35.474 27.333 115.463 1 38.45 ? C12 LMT 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #