data_6YU7 # _model_server_result.job_id IkgjetE-2IN1-k0EXVeveg _model_server_result.datetime_utc '2024-11-22 18:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6YU7 # _exptl.entry_id 6YU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.8 _cell.angle_gamma 90 _cell.entry_id 6YU7 _cell.length_a 44.1 _cell.length_b 49.9 _cell.length_c 110.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc11 E NA NA . A NA 504 1_555 J O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 F NA NA . A NA 505 1_555 G OXT TYR . A TYR 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YU7 _atom_sites.fract_transf_matrix[1][1] 0.022676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMT A 1 501 501 LMT LMT . C 2 LMT A 1 502 601 LMT LMT . D 2 LMT A 1 503 701 LMT LMT . E 3 NA A 1 504 1 NA NA . F 3 NA A 1 505 2 NA NA . G 4 TYR A 1 506 601 TYR TYR . H 5 BNG A 1 507 1 BNG BNG . I 5 BNG A 1 508 2 BNG BNG . J 6 HOH A 1 601 9 HOH HOH . J 6 HOH A 2 602 25 HOH HOH . J 6 HOH A 3 603 58 HOH HOH . J 6 HOH A 4 604 16 HOH HOH . J 6 HOH A 5 605 46 HOH HOH . J 6 HOH A 6 606 42 HOH HOH . J 6 HOH A 7 607 50 HOH HOH . J 6 HOH A 8 608 40 HOH HOH . J 6 HOH A 9 609 12 HOH HOH . J 6 HOH A 10 610 64 HOH HOH . J 6 HOH A 11 611 10 HOH HOH . J 6 HOH A 12 612 44 HOH HOH . J 6 HOH A 13 613 32 HOH HOH . J 6 HOH A 14 614 21 HOH HOH . J 6 HOH A 15 615 43 HOH HOH . J 6 HOH A 16 616 6 HOH HOH . J 6 HOH A 17 617 41 HOH HOH . J 6 HOH A 18 618 18 HOH HOH . J 6 HOH A 19 619 14 HOH HOH . J 6 HOH A 20 620 33 HOH HOH . J 6 HOH A 21 621 54 HOH HOH . J 6 HOH A 22 622 35 HOH HOH . J 6 HOH A 23 623 7 HOH HOH . J 6 HOH A 24 624 38 HOH HOH . J 6 HOH A 25 625 20 HOH HOH . J 6 HOH A 26 626 15 HOH HOH . J 6 HOH A 27 627 49 HOH HOH . J 6 HOH A 28 628 30 HOH HOH . J 6 HOH A 29 629 3 HOH HOH . J 6 HOH A 30 630 60 HOH HOH . J 6 HOH A 31 631 53 HOH HOH . J 6 HOH A 32 632 57 HOH HOH . J 6 HOH A 33 633 34 HOH HOH . J 6 HOH A 34 634 8 HOH HOH . J 6 HOH A 35 635 61 HOH HOH . J 6 HOH A 36 636 24 HOH HOH . J 6 HOH A 37 637 2 HOH HOH . J 6 HOH A 38 638 37 HOH HOH . J 6 HOH A 39 639 19 HOH HOH . J 6 HOH A 40 640 17 HOH HOH . J 6 HOH A 41 641 59 HOH HOH . J 6 HOH A 42 642 23 HOH HOH . J 6 HOH A 43 643 5 HOH HOH . J 6 HOH A 44 644 62 HOH HOH . J 6 HOH A 45 645 45 HOH HOH . J 6 HOH A 46 646 51 HOH HOH . J 6 HOH A 47 647 11 HOH HOH . J 6 HOH A 48 648 22 HOH HOH . J 6 HOH A 49 649 36 HOH HOH . J 6 HOH A 50 650 4 HOH HOH . J 6 HOH A 51 651 52 HOH HOH . J 6 HOH A 52 652 26 HOH HOH . J 6 HOH A 53 653 31 HOH HOH . J 6 HOH A 54 654 56 HOH HOH . J 6 HOH A 55 655 47 HOH HOH . J 6 HOH A 56 656 13 HOH HOH . J 6 HOH A 57 657 66 HOH HOH . J 6 HOH A 58 658 63 HOH HOH . J 6 HOH A 59 659 27 HOH HOH . J 6 HOH A 60 660 65 HOH HOH . J 6 HOH A 61 661 48 HOH HOH . J 6 HOH A 62 662 55 HOH HOH . J 6 HOH A 63 663 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.186 _atom_site.Cartn_y 22.13 _atom_site.Cartn_z 131.358 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #