data_6YU7 # _model_server_result.job_id -rXTIZpbMsipAN5S7WFSGg _model_server_result.datetime_utc '2024-10-14 09:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6YU7 # _exptl.entry_id 6YU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.189 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.8 _cell.angle_gamma 90 _cell.entry_id 6YU7 _cell.length_a 44.1 _cell.length_b 49.9 _cell.length_c 110.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 26 A GLY 24 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A O ALA 28 A ALA 26 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 A O VAL 29 A VAL 27 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A OD1 ASN 33 A ASN 31 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A O THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc6 A OG1 THR 233 A THR 231 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A OD1 ASP 265 A ASP 263 1_555 F NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 A O ALA 322 A ALA 320 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc9 A OG SER 325 A SER 323 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 A OG SER 326 A SER 324 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc11 E NA NA . A NA 504 1_555 J O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 F NA NA . A NA 505 1_555 G OXT TYR . A TYR 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C9 H11 N O3' _chem_comp.formula_weight 181.189 _chem_comp.id TYR _chem_comp.mon_nstd_flag y _chem_comp.name TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TYR sing 433 n n N H TYR sing 434 n n N H2 TYR sing 435 n n CA C TYR sing 436 n n CA CB TYR sing 437 n n CA HA TYR sing 438 n n C O TYR doub 439 n n C OXT TYR sing 440 n n CB CG TYR sing 441 n n CB HB2 TYR sing 442 n n CB HB3 TYR sing 443 n n CG CD1 TYR doub 444 n y CG CD2 TYR sing 445 n y CD1 CE1 TYR sing 446 n y CD1 HD1 TYR sing 447 n n CD2 CE2 TYR doub 448 n y CD2 HD2 TYR sing 449 n n CE1 CZ TYR doub 450 n y CE1 HE1 TYR sing 451 n n CE2 CZ TYR sing 452 n y CE2 HE2 TYR sing 453 n n CZ OH TYR sing 454 n n OH HH TYR sing 455 n n OXT HXT TYR sing 456 n n # _atom_sites.entry_id 6YU7 _atom_sites.fract_transf_matrix[1][1] 0.022676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMT A 1 501 501 LMT LMT . C 2 LMT A 1 502 601 LMT LMT . D 2 LMT A 1 503 701 LMT LMT . E 3 NA A 1 504 1 NA NA . F 3 NA A 1 505 2 NA NA . G 4 TYR A 1 506 601 TYR TYR . H 5 BNG A 1 507 1 BNG BNG . I 5 BNG A 1 508 2 BNG BNG . J 6 HOH A 1 601 9 HOH HOH . J 6 HOH A 2 602 25 HOH HOH . J 6 HOH A 3 603 58 HOH HOH . J 6 HOH A 4 604 16 HOH HOH . J 6 HOH A 5 605 46 HOH HOH . J 6 HOH A 6 606 42 HOH HOH . J 6 HOH A 7 607 50 HOH HOH . J 6 HOH A 8 608 40 HOH HOH . J 6 HOH A 9 609 12 HOH HOH . J 6 HOH A 10 610 64 HOH HOH . J 6 HOH A 11 611 10 HOH HOH . J 6 HOH A 12 612 44 HOH HOH . J 6 HOH A 13 613 32 HOH HOH . J 6 HOH A 14 614 21 HOH HOH . J 6 HOH A 15 615 43 HOH HOH . J 6 HOH A 16 616 6 HOH HOH . J 6 HOH A 17 617 41 HOH HOH . J 6 HOH A 18 618 18 HOH HOH . J 6 HOH A 19 619 14 HOH HOH . J 6 HOH A 20 620 33 HOH HOH . J 6 HOH A 21 621 54 HOH HOH . J 6 HOH A 22 622 35 HOH HOH . J 6 HOH A 23 623 7 HOH HOH . J 6 HOH A 24 624 38 HOH HOH . J 6 HOH A 25 625 20 HOH HOH . J 6 HOH A 26 626 15 HOH HOH . J 6 HOH A 27 627 49 HOH HOH . J 6 HOH A 28 628 30 HOH HOH . J 6 HOH A 29 629 3 HOH HOH . J 6 HOH A 30 630 60 HOH HOH . J 6 HOH A 31 631 53 HOH HOH . J 6 HOH A 32 632 57 HOH HOH . J 6 HOH A 33 633 34 HOH HOH . J 6 HOH A 34 634 8 HOH HOH . J 6 HOH A 35 635 61 HOH HOH . J 6 HOH A 36 636 24 HOH HOH . J 6 HOH A 37 637 2 HOH HOH . J 6 HOH A 38 638 37 HOH HOH . J 6 HOH A 39 639 19 HOH HOH . J 6 HOH A 40 640 17 HOH HOH . J 6 HOH A 41 641 59 HOH HOH . J 6 HOH A 42 642 23 HOH HOH . J 6 HOH A 43 643 5 HOH HOH . J 6 HOH A 44 644 62 HOH HOH . J 6 HOH A 45 645 45 HOH HOH . J 6 HOH A 46 646 51 HOH HOH . J 6 HOH A 47 647 11 HOH HOH . J 6 HOH A 48 648 22 HOH HOH . J 6 HOH A 49 649 36 HOH HOH . J 6 HOH A 50 650 4 HOH HOH . J 6 HOH A 51 651 52 HOH HOH . J 6 HOH A 52 652 26 HOH HOH . J 6 HOH A 53 653 31 HOH HOH . J 6 HOH A 54 654 56 HOH HOH . J 6 HOH A 55 655 47 HOH HOH . J 6 HOH A 56 656 13 HOH HOH . J 6 HOH A 57 657 66 HOH HOH . J 6 HOH A 58 658 63 HOH HOH . J 6 HOH A 59 659 27 HOH HOH . J 6 HOH A 60 660 65 HOH HOH . J 6 HOH A 61 661 48 HOH HOH . J 6 HOH A 62 662 55 HOH HOH . J 6 HOH A 63 663 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TYR . . . G 4 39.813 24.881 137.81 1 25.39 ? N TYR 506 A 1 HETATM 2 C CA TYR . . . G 4 39.312 25.296 136.512 1 23.37 ? CA TYR 506 A 1 HETATM 3 C C TYR . . . G 4 40.145 26.462 135.972 1 21.78 ? C TYR 506 A 1 HETATM 4 O O TYR . . . G 4 39.989 26.855 134.787 1 24.47 ? O TYR 506 A 1 HETATM 5 C CB TYR . . . G 4 37.843 25.704 136.604 1 30.71 ? CB TYR 506 A 1 HETATM 6 C CG TYR . . . G 4 37.025 24.647 137.348 1 27.02 ? CG TYR 506 A 1 HETATM 7 C CD1 TYR . . . G 4 36.811 23.397 136.785 1 23.63 ? CD1 TYR 506 A 1 HETATM 8 C CD2 TYR . . . G 4 36.485 24.941 138.589 1 31.75 ? CD2 TYR 506 A 1 HETATM 9 C CE1 TYR . . . G 4 36.068 22.446 137.466 1 24.58 ? CE1 TYR 506 A 1 HETATM 10 C CE2 TYR . . . G 4 35.738 23.993 139.269 1 27.76 ? CE2 TYR 506 A 1 HETATM 11 C CZ TYR . . . G 4 35.532 22.746 138.707 1 28.63 ? CZ TYR 506 A 1 HETATM 12 O OH TYR . . . G 4 34.777 21.791 139.396 1 25.6 ? OH TYR 506 A 1 HETATM 13 O OXT TYR . . . G 4 40.991 27.032 136.709 1 25.16 ? OXT TYR 506 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #