data_6YUG # _model_server_result.job_id VfRijb6JfRmIVLf6frcwVw _model_server_result.datetime_utc '2025-09-07 21:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6YUG # _exptl.entry_id 6YUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUG _cell.length_a 55.693 _cell.length_b 70.089 _cell.length_c 71.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 28 B CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6YUG _atom_sites.fract_transf_matrix[1][1] 0.017956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 201 201 ACO ACO . D 3 G6P A 1 202 202 G6P G6P . E 2 ACO B 1 201 201 ACO ACO . F 4 HOH A 1 301 29 HOH HOH . F 4 HOH A 2 302 22 HOH HOH . F 4 HOH A 3 303 4 HOH HOH . F 4 HOH A 4 304 45 HOH HOH . F 4 HOH A 5 305 94 HOH HOH . F 4 HOH A 6 306 46 HOH HOH . F 4 HOH A 7 307 67 HOH HOH . F 4 HOH A 8 308 69 HOH HOH . F 4 HOH A 9 309 5 HOH HOH . F 4 HOH A 10 310 24 HOH HOH . F 4 HOH A 11 311 9 HOH HOH . F 4 HOH A 12 312 102 HOH HOH . F 4 HOH A 13 313 104 HOH HOH . G 4 HOH B 1 301 25 HOH HOH . G 4 HOH B 2 302 14 HOH HOH . G 4 HOH B 3 303 61 HOH HOH . G 4 HOH B 4 304 77 HOH HOH . G 4 HOH B 5 305 37 HOH HOH . G 4 HOH B 6 306 34 HOH HOH . G 4 HOH B 7 307 2 HOH HOH . G 4 HOH B 8 308 21 HOH HOH . G 4 HOH B 9 309 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . C 2 1.598 -22.281 -5.028 1 86.32 ? N1A ACO 201 A 1 HETATM 2 C C2A ACO . . . C 2 2.613 -22.618 -4.166 1 86.22 ? C2A ACO 201 A 1 HETATM 3 N N3A ACO . . . C 2 3.488 -21.673 -3.751 1 84.42 ? N3A ACO 201 A 1 HETATM 4 C C4A ACO . . . C 2 3.363 -20.384 -4.184 1 82.37 ? C4A ACO 201 A 1 HETATM 5 C C5A ACO . . . C 2 2.378 -20.047 -5.02 1 82.33 ? C5A ACO 201 A 1 HETATM 6 C C6A ACO . . . C 2 1.474 -21.035 -5.449 1 84.65 ? C6A ACO 201 A 1 HETATM 7 N N6A ACO . . . C 2 0.366 -20.766 -6.361 1 84.93 ? N6A ACO 201 A 1 HETATM 8 N N7A ACO . . . C 2 2.489 -18.738 -5.278 1 80.06 ? N7A ACO 201 A 1 HETATM 9 C C8A ACO . . . C 2 3.54 -18.273 -4.602 1 79.35 ? C8A ACO 201 A 1 HETATM 10 N N9A ACO . . . C 2 4.085 -19.292 -3.934 1 80.3 ? N9A ACO 201 A 1 HETATM 11 C C1B ACO . . . C 2 5.207 -19.318 -3.049 1 79.83 ? C1B ACO 201 A 1 HETATM 12 C C2B ACO . . . C 2 6.403 -19.438 -3.665 1 81.47 ? C2B ACO 201 A 1 HETATM 13 O O2B ACO . . . C 2 7.35 -20.182 -2.838 1 81.59 ? O2B ACO 201 A 1 HETATM 14 C C3B ACO . . . C 2 6.927 -17.988 -3.842 1 79.47 ? C3B ACO 201 A 1 HETATM 15 O O3B ACO . . . C 2 8.241 -17.967 -3.733 1 82.39 ? O3B ACO 201 A 1 HETATM 16 P P3B ACO . . . C 2 9.177 -17.973 -5.18 1 86.68 ? P3B ACO 201 A 1 HETATM 17 O O7A ACO . . . C 2 10.68 -17.934 -4.879 1 87.06 ? O7A ACO 201 A 1 HETATM 18 O O8A ACO . . . C 2 8.874 -19.237 -5.941 1 89.06 ? O8A ACO 201 A 1 HETATM 19 O O9A ACO . . . C 2 8.777 -16.73 -6.016 1 84.91 ? O9A ACO 201 A 1 HETATM 20 C C4B ACO . . . C 2 6.24 -17.185 -2.643 1 75.68 ? C4B ACO 201 A 1 HETATM 21 O O4B ACO . . . C 2 5.198 -17.879 -2.237 1 76.51 ? O4B ACO 201 A 1 HETATM 22 C C5B ACO . . . C 2 5.732 -15.821 -3.094 1 71.14 ? C5B ACO 201 A 1 HETATM 23 O O5B ACO . . . C 2 5.941 -15.591 -4.489 1 69.35 ? O5B ACO 201 A 1 HETATM 24 P P1A ACO . . . C 2 5.307 -14.087 -4.955 1 65.22 ? P1A ACO 201 A 1 HETATM 25 O O1A ACO . . . C 2 5.125 -13.994 -6.475 1 67.05 ? O1A ACO 201 A 1 HETATM 26 O O2A ACO . . . C 2 6.171 -13.01 -4.454 1 64.1 ? O2A ACO 201 A 1 HETATM 27 O O3A ACO . . . C 2 3.902 -14.076 -4.108 1 60.01 ? O3A ACO 201 A 1 HETATM 28 P P2A ACO . . . C 2 2.436 -13.435 -4.47 1 55.31 ? P2A ACO 201 A 1 HETATM 29 O O4A ACO . . . C 2 1.61 -14.441 -5.206 1 56.77 ? O4A ACO 201 A 1 HETATM 30 O O5A ACO . . . C 2 2.568 -12.133 -5.198 1 53.07 ? O5A ACO 201 A 1 HETATM 31 O O6A ACO . . . C 2 1.747 -13.105 -3.014 1 52.06 ? O6A ACO 201 A 1 HETATM 32 C CBP ACO . . . C 2 0.284 -13.835 -1.322 1 51.02 ? CBP ACO 201 A 1 HETATM 33 C CCP ACO . . . C 2 1.661 -14.116 -2.02 1 52.75 ? CCP ACO 201 A 1 HETATM 34 C CDP ACO . . . C 2 0.348 -12.433 -0.607 1 47.73 ? CDP ACO 201 A 1 HETATM 35 C CEP ACO . . . C 2 -0.039 -14.918 -0.263 1 52.19 ? CEP ACO 201 A 1 HETATM 36 C CAP ACO . . . C 2 -0.811 -13.816 -2.463 1 51.36 ? CAP ACO 201 A 1 HETATM 37 O OAP ACO . . . C 2 -0.922 -15.049 -3.039 1 51.94 ? OAP ACO 201 A 1 HETATM 38 C C9P ACO . . . C 2 -2.174 -13.404 -1.932 1 52.23 ? C9P ACO 201 A 1 HETATM 39 O O9P ACO . . . C 2 -2.495 -12.233 -1.919 1 52.08 ? O9P ACO 201 A 1 HETATM 40 N N8P ACO . . . C 2 -3.085 -14.401 -1.468 1 53.73 ? N8P ACO 201 A 1 HETATM 41 C C7P ACO . . . C 2 -4.447 -13.995 -0.963 1 53.74 ? C7P ACO 201 A 1 HETATM 42 C C6P ACO . . . C 2 -4.334 -13.087 0.299 1 51.75 ? C6P ACO 201 A 1 HETATM 43 C C5P ACO . . . C 2 -3.545 -13.94 1.396 1 53.88 ? C5P ACO 201 A 1 HETATM 44 O O5P ACO . . . C 2 -3.618 -15.125 1.384 1 54.23 ? O5P ACO 201 A 1 HETATM 45 N N4P ACO . . . C 2 -2.695 -13.239 2.431 1 55.58 ? N4P ACO 201 A 1 HETATM 46 C C3P ACO . . . C 2 -1.982 -14.095 3.4 1 60.39 ? C3P ACO 201 A 1 HETATM 47 C C2P ACO . . . C 2 -2.608 -13.915 4.849 1 63.39 ? C2P ACO 201 A 1 HETATM 48 S S1P ACO . . . C 2 -1.15 -13.856 5.921 1 69 ? S1P ACO 201 A 1 HETATM 49 C C ACO . . . C 2 -0.808 -12.136 6.312 1 71.58 ? C ACO 201 A 1 HETATM 50 O O ACO . . . C 2 -1.359 -11.254 5.684 1 72.55 ? O ACO 201 A 1 HETATM 51 C CH3 ACO . . . C 2 0.186 -11.8 7.448 1 72.97 ? CH3 ACO 201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #