data_6YUL # _model_server_result.job_id ymDwqf1yDmdGY6nnhmdEog _model_server_result.datetime_utc '2024-10-12 07:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":404}' # _entry.id 6YUL # _exptl.entry_id 6YUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.333 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7,10-Dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUL _cell.length_a 128.649 _cell.length_b 128.649 _cell.length_c 125.454 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 L N N # _chem_comp.formula 'C17 H16 N4 O4' _chem_comp.formula_weight 340.333 _chem_comp.id PQ5 _chem_comp.mon_nstd_flag . _chem_comp.name '7,10-Dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C PQ5 doub 260 n n C O PQ5 sing 261 n n C C1 PQ5 sing 262 n n C2 C1 PQ5 doub 263 n y C2 C3 PQ5 sing 264 n y C1 C6 PQ5 sing 265 n y C3 C4 PQ5 doub 266 n y C6 O1 PQ5 sing 267 n n C6 C5 PQ5 doub 268 n y C4 C5 PQ5 sing 269 n y C4 C13 PQ5 sing 270 n n C14 C13 PQ5 sing 271 n y C14 N2 PQ5 doub 272 n y O1 C7 PQ5 sing 273 n n C13 C12 PQ5 doub 274 n y N2 N3 PQ5 sing 275 n y C7 C8 PQ5 sing 276 n n C12 N3 PQ5 sing 277 n y C12 N1 PQ5 sing 278 n y N3 C15 PQ5 sing 279 n y C8 O2 PQ5 sing 280 n n N1 C11 PQ5 doub 281 n y C15 C16 PQ5 doub 282 n y O2 C9 PQ5 sing 283 n n C11 C16 PQ5 sing 284 n y C11 N PQ5 sing 285 n n C9 C10 PQ5 sing 286 n n C10 N PQ5 sing 287 n n C15 H1 PQ5 sing 288 n n C3 H2 PQ5 sing 289 n n C5 H3 PQ5 sing 290 n n C2 H4 PQ5 sing 291 n n C8 H5 PQ5 sing 292 n n C8 H6 PQ5 sing 293 n n C9 H7 PQ5 sing 294 n n C9 H8 PQ5 sing 295 n n C10 H9 PQ5 sing 296 n n C10 H10 PQ5 sing 297 n n C7 H11 PQ5 sing 298 n n C7 H12 PQ5 sing 299 n n O H13 PQ5 sing 300 n n N H14 PQ5 sing 301 n n C16 H15 PQ5 sing 302 n n C14 H16 PQ5 sing 303 n n # _atom_sites.entry_id 6YUL _atom_sites.fract_transf_matrix[1][1] 0.007773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 AAA 1 401 334 SO4 SO4 . D 2 SO4 AAA 1 402 335 SO4 SO4 . E 3 PQ5 AAA 1 403 336 PQ5 I26 . F 2 SO4 AAA 1 404 2 SO4 SO4 . G 2 SO4 AAA 1 405 3 SO4 SO4 . H 2 SO4 AAA 1 406 4 SO4 SO4 . I 2 SO4 GGG 1 401 334 SO4 SO4 . J 2 SO4 GGG 1 402 335 SO4 SO4 . K 2 SO4 GGG 1 403 336 SO4 SO4 . L 3 PQ5 GGG 1 404 337 PQ5 I26 . M 2 SO4 GGG 1 405 1 SO4 SO4 . N 2 SO4 GGG 1 406 5 SO4 SO4 . O 4 HOH AAA 1 501 354 HOH HOH . O 4 HOH AAA 2 502 356 HOH HOH . O 4 HOH AAA 3 503 4 HOH HOH . O 4 HOH AAA 4 504 343 HOH HOH . O 4 HOH AAA 5 505 340 HOH HOH . O 4 HOH AAA 6 506 346 HOH HOH . O 4 HOH AAA 7 507 359 HOH HOH . O 4 HOH AAA 8 508 7 HOH HOH . O 4 HOH AAA 9 509 9 HOH HOH . O 4 HOH AAA 10 510 338 HOH HOH . O 4 HOH AAA 11 511 344 HOH HOH . O 4 HOH AAA 12 512 345 HOH HOH . O 4 HOH AAA 13 513 3 HOH HOH . O 4 HOH AAA 14 514 339 HOH HOH . O 4 HOH AAA 15 515 355 HOH HOH . O 4 HOH AAA 16 516 337 HOH HOH . O 4 HOH AAA 17 517 349 HOH HOH . O 4 HOH AAA 18 518 351 HOH HOH . O 4 HOH AAA 19 519 1 HOH HOH . O 4 HOH AAA 20 520 10 HOH HOH . O 4 HOH AAA 21 521 347 HOH HOH . O 4 HOH AAA 22 522 8 HOH HOH . O 4 HOH AAA 23 523 353 HOH HOH . O 4 HOH AAA 24 524 357 HOH HOH . O 4 HOH AAA 25 525 348 HOH HOH . O 4 HOH AAA 26 526 358 HOH HOH . O 4 HOH AAA 27 527 341 HOH HOH . O 4 HOH AAA 28 528 350 HOH HOH . O 4 HOH AAA 29 529 342 HOH HOH . P 4 HOH GGG 1 501 5 HOH HOH . P 4 HOH GGG 2 502 339 HOH HOH . P 4 HOH GGG 3 503 11 HOH HOH . P 4 HOH GGG 4 504 12 HOH HOH . P 4 HOH GGG 5 505 6 HOH HOH . P 4 HOH GGG 6 506 344 HOH HOH . P 4 HOH GGG 7 507 341 HOH HOH . P 4 HOH GGG 8 508 338 HOH HOH . P 4 HOH GGG 9 509 342 HOH HOH . P 4 HOH GGG 10 510 2 HOH HOH . P 4 HOH GGG 11 511 343 HOH HOH . P 4 HOH GGG 12 512 347 HOH HOH . P 4 HOH GGG 13 513 349 HOH HOH . P 4 HOH GGG 14 514 345 HOH HOH . P 4 HOH GGG 15 515 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 PQ5 . . . L 3 7.606 84.889 28.721 1 55.83 ? C15 PQ5 404 GGG 1 HETATM 2 C C13 PQ5 . . . L 3 6.268 83.838 25.612 1 51.32 ? C13 PQ5 404 GGG 1 HETATM 3 C C1 PQ5 . . . L 3 3.601 81.68 23.04 1 49.71 ? C1 PQ5 404 GGG 1 HETATM 4 C C6 PQ5 . . . L 3 3.673 81.399 24.407 1 49.17 ? C6 PQ5 404 GGG 1 HETATM 5 C C4 PQ5 . . . L 3 5.396 83.044 24.714 1 49.95 ? C4 PQ5 404 GGG 1 HETATM 6 C C3 PQ5 . . . L 3 5.35 83.313 23.351 1 50.02 ? C3 PQ5 404 GGG 1 HETATM 7 C C5 PQ5 . . . L 3 4.56 82.059 25.234 1 51.19 ? C5 PQ5 404 GGG 1 HETATM 8 C C2 PQ5 . . . L 3 4.466 82.645 22.527 1 47.03 ? C2 PQ5 404 GGG 1 HETATM 9 C C11 PQ5 . . . L 3 6.243 83.002 29.154 1 60.22 ? C11 PQ5 404 GGG 1 HETATM 10 C C8 PQ5 . . . L 3 2.453 80.363 27.229 1 57.6 ? C8 PQ5 404 GGG 1 HETATM 11 C C9 PQ5 . . . L 3 3.572 81.055 29.235 1 56.39 ? C9 PQ5 404 GGG 1 HETATM 12 C C10 PQ5 . . . L 3 5.013 80.894 29.625 1 56.36 ? C10 PQ5 404 GGG 1 HETATM 13 C C12 PQ5 . . . L 3 6.387 83.742 27.026 1 54.99 ? C12 PQ5 404 GGG 1 HETATM 14 C C7 PQ5 . . . L 3 3.049 79.733 26.028 1 58.51 ? C7 PQ5 404 GGG 1 HETATM 15 O O3 PQ5 . . . L 3 2.421 81.46 21.002 1 52.57 ? O3 PQ5 404 GGG 1 HETATM 16 C C PQ5 . . . L 3 2.723 80.953 22.072 1 48.92 ? C PQ5 404 GGG 1 HETATM 17 O O PQ5 . . . L 3 2.194 79.843 22.49 1 49.43 ? O PQ5 404 GGG 1 HETATM 18 O O1 PQ5 . . . L 3 2.724 80.543 24.892 1 53.23 ? O1 PQ5 404 GGG 1 HETATM 19 O O2 PQ5 . . . L 3 3.206 79.983 28.368 1 56.15 ? O2 PQ5 404 GGG 1 HETATM 20 N N PQ5 . . . L 3 5.619 82.158 30.016 1 57.86 ? N PQ5 404 GGG 1 HETATM 21 C C16 PQ5 . . . L 3 7.075 84.053 29.633 1 57.43 ? C16 PQ5 404 GGG 1 HETATM 22 N N3 PQ5 . . . L 3 7.27 84.718 27.401 1 58.36 ? N3 PQ5 404 GGG 1 HETATM 23 N N1 PQ5 . . . L 3 6.018 82.752 27.854 1 56.33 ? N1 PQ5 404 GGG 1 HETATM 24 N N2 PQ5 . . . L 3 7.739 85.442 26.306 1 53.89 ? N2 PQ5 404 GGG 1 HETATM 25 C C14 PQ5 . . . L 3 7.127 84.892 25.267 1 53.43 ? C14 PQ5 404 GGG 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #