data_6YUM
#
_model_server_result.job_id            hyCzA4WLj02GcQ-Kn1oHwg 
_model_server_result.datetime_utc      '2024-10-12 09:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yum 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    6YUM 
#
_exptl.entry_id    6YUM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.464 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[5-[2-(2-hydroxyethyloxy)ethyl-[(2-methylpropan-2-yl)oxycarbonyl]amino]pyrazolo[1,5-a]pyrimidin-3-yl]-2-oxidanyl-benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YUM 
_cell.length_a            125.479 
_cell.length_b            125.479 
_cell.length_c            124.655 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YUM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
_chem_comp.formula           'C22 H26 N4 O7' 
_chem_comp.formula_weight    458.464 
_chem_comp.id                PQ8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[5-[2-(2-hydroxyethyloxy)ethyl-[(2-methylpropan-2-yl)oxycarbonyl]amino]pyrazolo[1,5-a]pyrimidin-3-yl]-2-oxidanyl-benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C16 PQ8 doub 260 n n 
C16 O4 PQ8 sing 261 n n 
C16 C15 PQ8 sing 262 n n 
C14 C15 PQ8 doub 263 n y 
C14 C13 PQ8 sing 264 n y 
C15 C17 PQ8 sing 265 n y 
C13 C12 PQ8 doub 266 n y 
C17 O6 PQ8 sing 267 n n 
C17 C18 PQ8 doub 268 n y 
C12 C18 PQ8 sing 269 n y 
C12 C11 PQ8 sing 270 n n 
C19 C11 PQ8 sing 271 n y 
C19 N2 PQ8 doub 272 n y 
C11 C10 PQ8 doub 273 n y 
N2 N3 PQ8 sing 274 n y 
C10 N3 PQ8 sing 275 n y 
C10 N1 PQ8 sing 276 n y 
N3 C20 PQ8 sing 277 n y 
N1 C9 PQ8 doub 278 n y 
C7 C8 PQ8 sing 279 n n 
C7 O2 PQ8 sing 280 n n 
C20 C21 PQ8 doub 281 n y 
C8 O3 PQ8 sing 282 n n 
C9 C21 PQ8 sing 283 n y 
C9 N PQ8 sing 284 n n 
C6 O2 PQ8 sing 285 n n 
C6 C5 PQ8 sing 286 n n 
C5 N PQ8 sing 287 n n 
N C PQ8 sing 288 n n 
C O PQ8 doub 289 n n 
C O1 PQ8 sing 290 n n 
O1 C1 PQ8 sing 291 n n 
C3 C1 PQ8 sing 292 n n 
C4 C1 PQ8 sing 293 n n 
C1 C2 PQ8 sing 294 n n 
C2 H1 PQ8 sing 295 n n 
C2 H2 PQ8 sing 296 n n 
C2 H3 PQ8 sing 297 n n 
C7 H4 PQ8 sing 298 n n 
C7 H5 PQ8 sing 299 n n 
C8 H6 PQ8 sing 300 n n 
C8 H7 PQ8 sing 301 n n 
C13 H8 PQ8 sing 302 n n 
C14 H9 PQ8 sing 303 n n 
O6 H10 PQ8 sing 304 n n 
O4 H11 PQ8 sing 305 n n 
C18 H12 PQ8 sing 306 n n 
C19 H13 PQ8 sing 307 n n 
C20 H14 PQ8 sing 308 n n 
C21 H15 PQ8 sing 309 n n 
C4 H16 PQ8 sing 310 n n 
C4 H17 PQ8 sing 311 n n 
C4 H18 PQ8 sing 312 n n 
C3 H19 PQ8 sing 313 n n 
C3 H20 PQ8 sing 314 n n 
C3 H21 PQ8 sing 315 n n 
C5 H22 PQ8 sing 316 n n 
C5 H23 PQ8 sing 317 n n 
C6 H24 PQ8 sing 318 n n 
C6 H25 PQ8 sing 319 n n 
O3 H26 PQ8 sing 320 n n 
#
_atom_sites.entry_id                     6YUM 
_atom_sites.fract_transf_matrix[1][1]    0.007969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 AAA 1 401 340 SO4 SO4 . 
D 2 SO4 AAA 1 402 342 SO4 SO4 . 
E 2 SO4 AAA 1 403 341 SO4 SO4 . 
F 3 PQ8 AAA 1 404 1 PQ8 I20 . 
G 2 SO4 GGG 1 401 341 SO4 SO4 . 
H 2 SO4 GGG 1 402 340 SO4 SO4 . 
I 2 SO4 GGG 1 403 341 SO4 SO4 . 
J 3 PQ8 GGG 1 404 2 PQ8 I20 . 
K 4 HOH AAA 1 501 4 HOH HOH . 
L 4 HOH GGG 1 501 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PQ8 . . . F 3 43.726 3.372 3.085 1 111.59 ? C1 PQ8 404 AAA 1 
HETATM 2 C C2 PQ8 . . . F 3 43.819 4.049 4.434 1 110.43 ? C2 PQ8 404 AAA 1 
HETATM 3 O O5 PQ8 . . . F 3 44.96 2.202 -9.259 1 88.28 ? O5 PQ8 404 AAA 1 
HETATM 4 C C7 PQ8 . . . F 3 46.574 1.661 -1.652 1 109.89 ? C7 PQ8 404 AAA 1 
HETATM 5 C C8 PQ8 . . . F 3 48.062 1.571 -1.468 1 110.72 ? C8 PQ8 404 AAA 1 
HETATM 6 C C9 PQ8 . . . F 3 42.491 5.355 -1.019 1 90.91 ? C9 PQ8 404 AAA 1 
HETATM 7 C C10 PQ8 . . . F 3 41.922 5.686 -3.194 1 84.72 ? C10 PQ8 404 AAA 1 
HETATM 8 C C11 PQ8 . . . F 3 41.889 5.593 -4.611 1 82.7 ? C11 PQ8 404 AAA 1 
HETATM 9 C C12 PQ8 . . . F 3 42.728 4.74 -5.493 1 80.53 ? C12 PQ8 404 AAA 1 
HETATM 10 C C13 PQ8 . . . F 3 42.527 4.738 -6.87 1 80.82 ? C13 PQ8 404 AAA 1 
HETATM 11 C C14 PQ8 . . . F 3 43.341 3.993 -7.702 1 81.89 ? C14 PQ8 404 AAA 1 
HETATM 12 C C15 PQ8 . . . F 3 44.38 3.222 -7.183 1 83.73 ? C15 PQ8 404 AAA 1 
HETATM 13 C C16 PQ8 . . . F 3 45.114 2.249 -8.045 1 87.61 ? C16 PQ8 404 AAA 1 
HETATM 14 N N PQ8 . . . F 3 43.176 4.636 -0.052 1 98.54 ? N PQ8 404 AAA 1 
HETATM 15 C C PQ8 . . . F 3 42.562 4.412 1.183 1 101.97 ? C PQ8 404 AAA 1 
HETATM 16 O O PQ8 . . . F 3 41.379 4.201 1.304 1 101.95 ? O PQ8 404 AAA 1 
HETATM 17 N N3 PQ8 . . . F 3 41.071 6.693 -2.854 1 84.82 ? N3 PQ8 404 AAA 1 
HETATM 18 O O6 PQ8 . . . F 3 45.56 2.486 -5.207 1 75.67 ? O6 PQ8 404 AAA 1 
HETATM 19 O O4 PQ8 . . . F 3 45.922 1.457 -7.4 1 92.24 ? O4 PQ8 404 AAA 1 
HETATM 20 C C17 PQ8 . . . F 3 44.575 3.22 -5.788 1 80.04 ? C17 PQ8 404 AAA 1 
HETATM 21 C C18 PQ8 . . . F 3 43.757 3.969 -4.957 1 80.52 ? C18 PQ8 404 AAA 1 
HETATM 22 C C19 PQ8 . . . F 3 40.956 6.567 -4.992 1 82.81 ? C19 PQ8 404 AAA 1 
HETATM 23 N N2 PQ8 . . . F 3 40.451 7.245 -3.97 1 84.47 ? N2 PQ8 404 AAA 1 
HETATM 24 N N1 PQ8 . . . F 3 42.632 5.005 -2.29 1 86.26 ? N1 PQ8 404 AAA 1 
HETATM 25 C C20 PQ8 . . . F 3 40.934 7.076 -1.548 1 86.14 ? C20 PQ8 404 AAA 1 
HETATM 26 C C21 PQ8 . . . F 3 41.641 6.419 -0.607 1 88.29 ? C21 PQ8 404 AAA 1 
HETATM 27 O O1 PQ8 . . . F 3 43.45 4.514 2.176 1 106.73 ? O1 PQ8 404 AAA 1 
HETATM 28 C C4 PQ8 . . . F 3 42.625 2.332 3.075 1 112.53 ? C4 PQ8 404 AAA 1 
HETATM 29 C C3 PQ8 . . . F 3 45.051 2.756 2.692 1 112.71 ? C3 PQ8 404 AAA 1 
HETATM 30 C C5 PQ8 . . . F 3 44.558 4.211 -0.329 1 102.32 ? C5 PQ8 404 AAA 1 
HETATM 31 C C6 PQ8 . . . F 3 44.655 2.749 -0.706 1 105.3 ? C6 PQ8 404 AAA 1 
HETATM 32 O O2 PQ8 . . . F 3 45.995 2.3 -0.518 1 109.81 ? O2 PQ8 404 AAA 1 
HETATM 33 O O3 PQ8 . . . F 3 48.41 0.838 -0.305 1 110.1 ? O3 PQ8 404 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#