data_6YUO # _model_server_result.job_id iq_j2rMmLGdppDESlgf4ag _model_server_result.datetime_utc '2024-11-14 23:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yuo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":304}' # _entry.id 6YUO # _exptl.entry_id 6YUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUO _cell.length_a 132.93 _cell.length_b 132.93 _cell.length_c 69.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 132.93 132.93 34.635 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'Gd 3' _chem_comp.formula_weight 157.25 _chem_comp.id GD3 _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YUO _atom_sites.fract_transf_matrix[1][1] 0.007523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 301 301 CL CL . D 3 EDO A 1 302 401 EDO EDO . E 4 GD3 B 1 301 301 GD3 GD3 . F 2 CL B 1 302 401 CL CL . G 5 PEG B 1 303 501 PEG PEG . H 4 GD3 B 1 304 1 GD3 GD3 . I 6 HOH A 1 401 56 HOH HOH . I 6 HOH A 2 402 21 HOH HOH . I 6 HOH A 3 403 42 HOH HOH . I 6 HOH A 4 404 58 HOH HOH . I 6 HOH A 5 405 20 HOH HOH . I 6 HOH A 6 406 13 HOH HOH . I 6 HOH A 7 407 59 HOH HOH . I 6 HOH A 8 408 41 HOH HOH . I 6 HOH A 9 409 4 HOH HOH . I 6 HOH A 10 410 9 HOH HOH . I 6 HOH A 11 411 30 HOH HOH . I 6 HOH A 12 412 38 HOH HOH . I 6 HOH A 13 413 2 HOH HOH . I 6 HOH A 14 414 69 HOH HOH . I 6 HOH A 15 415 35 HOH HOH . I 6 HOH A 16 416 7 HOH HOH . I 6 HOH A 17 417 77 HOH HOH . I 6 HOH A 18 418 15 HOH HOH . I 6 HOH A 19 419 16 HOH HOH . I 6 HOH A 20 420 5 HOH HOH . I 6 HOH A 21 421 6 HOH HOH . I 6 HOH A 22 422 53 HOH HOH . I 6 HOH A 23 423 63 HOH HOH . I 6 HOH A 24 424 1 HOH HOH . I 6 HOH A 25 425 67 HOH HOH . I 6 HOH A 26 426 12 HOH HOH . I 6 HOH A 27 427 14 HOH HOH . I 6 HOH A 28 428 82 HOH HOH . I 6 HOH A 29 429 50 HOH HOH . I 6 HOH A 30 430 70 HOH HOH . I 6 HOH A 31 431 71 HOH HOH . I 6 HOH A 32 432 18 HOH HOH . I 6 HOH A 33 433 34 HOH HOH . I 6 HOH A 34 434 11 HOH HOH . I 6 HOH A 35 435 37 HOH HOH . I 6 HOH A 36 436 46 HOH HOH . I 6 HOH A 37 437 72 HOH HOH . I 6 HOH A 38 438 55 HOH HOH . I 6 HOH A 39 439 54 HOH HOH . I 6 HOH A 40 440 68 HOH HOH . I 6 HOH A 41 441 75 HOH HOH . I 6 HOH A 42 442 80 HOH HOH . I 6 HOH A 43 443 76 HOH HOH . I 6 HOH A 44 444 78 HOH HOH . I 6 HOH A 45 445 81 HOH HOH . I 6 HOH A 46 446 74 HOH HOH . I 6 HOH A 47 447 60 HOH HOH . J 6 HOH B 1 401 57 HOH HOH . J 6 HOH B 2 402 65 HOH HOH . J 6 HOH B 3 403 27 HOH HOH . J 6 HOH B 4 404 10 HOH HOH . J 6 HOH B 5 405 19 HOH HOH . J 6 HOH B 6 406 22 HOH HOH . J 6 HOH B 7 407 33 HOH HOH . J 6 HOH B 8 408 43 HOH HOH . J 6 HOH B 9 409 66 HOH HOH . J 6 HOH B 10 410 25 HOH HOH . J 6 HOH B 11 411 36 HOH HOH . J 6 HOH B 12 412 23 HOH HOH . J 6 HOH B 13 413 49 HOH HOH . J 6 HOH B 14 414 17 HOH HOH . J 6 HOH B 15 415 61 HOH HOH . J 6 HOH B 16 416 32 HOH HOH . J 6 HOH B 17 417 39 HOH HOH . J 6 HOH B 18 418 47 HOH HOH . J 6 HOH B 19 419 31 HOH HOH . J 6 HOH B 20 420 48 HOH HOH . J 6 HOH B 21 421 28 HOH HOH . J 6 HOH B 22 422 51 HOH HOH . J 6 HOH B 23 423 62 HOH HOH . J 6 HOH B 24 424 3 HOH HOH . J 6 HOH B 25 425 29 HOH HOH . J 6 HOH B 26 426 8 HOH HOH . J 6 HOH B 27 427 26 HOH HOH . J 6 HOH B 28 428 44 HOH HOH . J 6 HOH B 29 429 45 HOH HOH . J 6 HOH B 30 430 24 HOH HOH . J 6 HOH B 31 431 73 HOH HOH . J 6 HOH B 32 432 64 HOH HOH . J 6 HOH B 33 433 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 54.466 _atom_site.Cartn_y 53.034 _atom_site.Cartn_z 52.711 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 203.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD3 _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 173 _model_server_stats.parse_time_ms 64 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 1359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #