data_6YUQ # _model_server_result.job_id wKeZxPkSBl3e5GzA_gOuVg _model_server_result.datetime_utc '2024-11-26 22:05:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6YUQ # _exptl.entry_id 6YUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUQ _cell.length_a 137.483 _cell.length_b 137.483 _cell.length_c 70.253 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -35.1265 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F O18 BMX . A BMX 404 1_555 G C1 BMX . A BMX 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 G O18 BMX . A BMX 405 1_555 H C1 BMX . A BMX 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 H O18 BMX . A BMX 406 1_555 I C1 BM3 . A BM3 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 6YUQ _atom_sites.fract_transf_matrix[1][1] 0.007274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 401 EDO EDO . D 3 PEG A 1 402 501 PEG PEG . E 4 CL A 1 403 1 CL CL . F 5 BMX A 1 404 301 BMX SV8 . G 5 BMX A 1 405 301 BMX SV8 . H 5 BMX A 1 406 301 BMX SV8 . I 6 BM3 A 1 407 301 BM3 SV8 . J 7 PGE B 1 301 301 PGE PGE . K 4 CL B 1 302 2 CL CL . L 8 HOH A 1 501 1 HOH HOH . L 8 HOH A 2 502 36 HOH HOH . L 8 HOH A 3 503 9 HOH HOH . L 8 HOH A 4 504 4 HOH HOH . L 8 HOH A 5 505 7 HOH HOH . L 8 HOH A 6 506 14 HOH HOH . L 8 HOH A 7 507 40 HOH HOH . L 8 HOH A 8 508 30 HOH HOH . L 8 HOH A 9 509 17 HOH HOH . L 8 HOH A 10 510 29 HOH HOH . L 8 HOH A 11 511 15 HOH HOH . L 8 HOH A 12 512 24 HOH HOH . L 8 HOH A 13 513 38 HOH HOH . L 8 HOH A 14 514 12 HOH HOH . L 8 HOH A 15 515 35 HOH HOH . L 8 HOH A 16 516 21 HOH HOH . L 8 HOH A 17 517 34 HOH HOH . L 8 HOH A 18 518 33 HOH HOH . L 8 HOH A 19 519 10 HOH HOH . L 8 HOH A 20 520 25 HOH HOH . L 8 HOH A 21 521 18 HOH HOH . L 8 HOH A 22 522 26 HOH HOH . L 8 HOH A 23 523 47 HOH HOH . L 8 HOH A 24 524 45 HOH HOH . L 8 HOH A 25 525 32 HOH HOH . M 8 HOH B 1 401 42 HOH HOH . M 8 HOH B 2 402 20 HOH HOH . M 8 HOH B 3 403 28 HOH HOH . M 8 HOH B 4 404 5 HOH HOH . M 8 HOH B 5 405 22 HOH HOH . M 8 HOH B 6 406 27 HOH HOH . M 8 HOH B 7 407 13 HOH HOH . M 8 HOH B 8 408 6 HOH HOH . M 8 HOH B 9 409 2 HOH HOH . M 8 HOH B 10 410 41 HOH HOH . M 8 HOH B 11 411 37 HOH HOH . M 8 HOH B 12 412 31 HOH HOH . M 8 HOH B 13 413 19 HOH HOH . M 8 HOH B 14 414 3 HOH HOH . M 8 HOH B 15 415 8 HOH HOH . M 8 HOH B 16 416 23 HOH HOH . M 8 HOH B 17 417 11 HOH HOH . M 8 HOH B 18 418 46 HOH HOH . M 8 HOH B 19 419 16 HOH HOH . M 8 HOH B 20 420 44 HOH HOH . M 8 HOH B 21 421 39 HOH HOH . M 8 HOH B 22 422 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -7.758 28.344 -19.483 1 76.07 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . C 2 -6.472 27.718 -19.583 1 78.96 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . C 2 -8.68 27.86 -20.601 1 72.34 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . C 2 -10.036 27.837 -20.13 1 72.4 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 525 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #