data_6YUQ
#
_model_server_result.job_id            oPC1PTGbQBls6zR93-REMw 
_model_server_result.datetime_utc      '2024-11-26 22:00:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yuq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    6YUQ 
#
_exptl.entry_id    6YUQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.188 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YUQ 
_cell.length_a            137.483 
_cell.length_b            137.483 
_cell.length_c            70.253 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YUQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -35.1265 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 F O18 BMX . A BMX 404 1_555 G C1 BMX . A BMX 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale2 G O18 BMX . A BMX 405 1_555 H C1 BMX . A BMX 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale3 H O18 BMX . A BMX 406 1_555 I C1 BM3 . A BM3 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
#
_chem_comp.formula           'C8 H16 N O9 P' 
_chem_comp.formula_weight    301.188 
_chem_comp.id                BMX 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE;N-acetyl-6-O-phosphono-alpha-D-mannosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannose;2-acetamido-2-deoxy-6-O-phosphono-D-mannose;2-acetamido-2-deoxy-6-O-phosphono-mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BMX sing 100 n n 
C1 C2 BMX sing 101 n n 
C1 O5 BMX sing 102 n n 
C2 N2 BMX sing 103 n n 
C2 C3 BMX sing 104 n n 
N2 C7 BMX sing 105 n n 
C7 O7 BMX doub 106 n n 
C7 C8 BMX sing 107 n n 
C3 O3 BMX sing 108 n n 
C3 C4 BMX sing 109 n n 
C4 O4 BMX sing 110 n n 
C4 C5 BMX sing 111 n n 
C5 C6 BMX sing 112 n n 
C5 O5 BMX sing 113 n n 
C6 O6 BMX sing 114 n n 
O6 P BMX sing 115 n n 
P O17 BMX doub 116 n n 
P O18 BMX sing 117 n n 
P O19 BMX sing 118 n n 
C1 H1 BMX sing 119 n n 
O1 HO1 BMX sing 120 n n 
C2 H2 BMX sing 121 n n 
N2 HN2 BMX sing 122 n n 
C3 H3 BMX sing 123 n n 
C8 H81 BMX sing 124 n n 
C8 H82 BMX sing 125 n n 
C8 H83 BMX sing 126 n n 
O3 HO3 BMX sing 127 n n 
C4 H4 BMX sing 128 n n 
O4 HO4 BMX sing 129 n n 
C5 H5 BMX sing 130 n n 
C6 H61 BMX sing 131 n n 
C6 H62 BMX sing 132 n n 
O18 H18 BMX sing 133 n n 
O19 H19 BMX sing 134 n n 
#
_pdbx_chem_comp_identifier.comp_id            BMX 
_pdbx_chem_comp_identifier.identifier         a-D-ManpNAc6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6YUQ 
_atom_sites.fract_transf_matrix[1][1]    0.007274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 401 401 EDO EDO . 
D 3 PEG A 1 402 501 PEG PEG . 
E 4 CL A 1 403 1 CL CL . 
F 5 BMX A 1 404 301 BMX SV8 . 
G 5 BMX A 1 405 301 BMX SV8 . 
H 5 BMX A 1 406 301 BMX SV8 . 
I 6 BM3 A 1 407 301 BM3 SV8 . 
J 7 PGE B 1 301 301 PGE PGE . 
K 4 CL B 1 302 2 CL CL . 
L 8 HOH A 1 501 1 HOH HOH . 
L 8 HOH A 2 502 36 HOH HOH . 
L 8 HOH A 3 503 9 HOH HOH . 
L 8 HOH A 4 504 4 HOH HOH . 
L 8 HOH A 5 505 7 HOH HOH . 
L 8 HOH A 6 506 14 HOH HOH . 
L 8 HOH A 7 507 40 HOH HOH . 
L 8 HOH A 8 508 30 HOH HOH . 
L 8 HOH A 9 509 17 HOH HOH . 
L 8 HOH A 10 510 29 HOH HOH . 
L 8 HOH A 11 511 15 HOH HOH . 
L 8 HOH A 12 512 24 HOH HOH . 
L 8 HOH A 13 513 38 HOH HOH . 
L 8 HOH A 14 514 12 HOH HOH . 
L 8 HOH A 15 515 35 HOH HOH . 
L 8 HOH A 16 516 21 HOH HOH . 
L 8 HOH A 17 517 34 HOH HOH . 
L 8 HOH A 18 518 33 HOH HOH . 
L 8 HOH A 19 519 10 HOH HOH . 
L 8 HOH A 20 520 25 HOH HOH . 
L 8 HOH A 21 521 18 HOH HOH . 
L 8 HOH A 22 522 26 HOH HOH . 
L 8 HOH A 23 523 47 HOH HOH . 
L 8 HOH A 24 524 45 HOH HOH . 
L 8 HOH A 25 525 32 HOH HOH . 
M 8 HOH B 1 401 42 HOH HOH . 
M 8 HOH B 2 402 20 HOH HOH . 
M 8 HOH B 3 403 28 HOH HOH . 
M 8 HOH B 4 404 5 HOH HOH . 
M 8 HOH B 5 405 22 HOH HOH . 
M 8 HOH B 6 406 27 HOH HOH . 
M 8 HOH B 7 407 13 HOH HOH . 
M 8 HOH B 8 408 6 HOH HOH . 
M 8 HOH B 9 409 2 HOH HOH . 
M 8 HOH B 10 410 41 HOH HOH . 
M 8 HOH B 11 411 37 HOH HOH . 
M 8 HOH B 12 412 31 HOH HOH . 
M 8 HOH B 13 413 19 HOH HOH . 
M 8 HOH B 14 414 3 HOH HOH . 
M 8 HOH B 15 415 8 HOH HOH . 
M 8 HOH B 16 416 23 HOH HOH . 
M 8 HOH B 17 417 11 HOH HOH . 
M 8 HOH B 18 418 46 HOH HOH . 
M 8 HOH B 19 419 16 HOH HOH . 
M 8 HOH B 20 420 44 HOH HOH . 
M 8 HOH B 21 421 39 HOH HOH . 
M 8 HOH B 22 422 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BMX . . . F 5 1.282 35.172 -40.934 1 114.67 ? C1 BMX 404 A 1 
HETATM 2 C C2 BMX . . . F 5 1.427 35.811 -42.3 1 113.49 ? C2 BMX 404 A 1 
HETATM 3 C C3 BMX . . . F 5 0.109 36.011 -42.986 1 110.33 ? C3 BMX 404 A 1 
HETATM 4 C C4 BMX . . . F 5 -1.079 35.709 -42.113 1 105.78 ? C4 BMX 404 A 1 
HETATM 5 C C5 BMX . . . F 5 -0.934 36.294 -40.701 1 104.42 ? C5 BMX 404 A 1 
HETATM 6 C C6 BMX . . . F 5 -2.025 35.743 -39.794 1 98.25 ? C6 BMX 404 A 1 
HETATM 7 C C7 BMX . . . F 5 3.674 35.464 -43.536 1 116.75 ? C7 BMX 404 A 1 
HETATM 8 C C8 BMX . . . F 5 4.128 36.875 -43.093 1 111.86 ? C8 BMX 404 A 1 
HETATM 9 N N2 BMX . . . F 5 2.342 34.953 -43.141 1 117.48 ? N2 BMX 404 A 1 
HETATM 10 O O1 BMX . . . F 5 2.52 35.022 -40.35 1 115.31 ? O1 BMX 404 A 1 
HETATM 11 O O3 BMX . . . F 5 0.046 35.177 -44.177 1 110.7 ? O3 BMX 404 A 1 
HETATM 12 O O4 BMX . . . F 5 -2.272 36.229 -42.734 1 102.5 ? O4 BMX 404 A 1 
HETATM 13 O O5 BMX . . . F 5 0.378 36.012 -40.068 1 112.55 ? O5 BMX 404 A 1 
HETATM 14 O O6 BMX . . . F 5 -2.612 34.582 -40.412 1 95.94 ? O6 BMX 404 A 1 
HETATM 15 O O7 BMX . . . F 5 4.393 34.794 -44.194 1 116.51 ? O7 BMX 404 A 1 
HETATM 16 P P BMX . . . F 5 -3.656 33.603 -39.504 1 89.51 ? P BMX 404 A 1 
HETATM 17 O O19 BMX . . . F 5 -3.103 33.406 -38.112 1 86.13 ? O19 BMX 404 A 1 
HETATM 18 O O17 BMX . . . F 5 -3.787 32.245 -40.162 1 86.73 ? O17 BMX 404 A 1 
HETATM 19 O O18 BMX . . . F 5 -5.139 34.336 -39.404 1 80.36 ? O18 BMX 404 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           19 
#