data_6YUS # _model_server_result.job_id W3Ph-DjLHZig8XW277Fs6A _model_server_result.datetime_utc '2025-03-05 01:46:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6YUS # _exptl.entry_id 6YUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUS _cell.length_a 136.74 _cell.length_b 136.74 _cell.length_c 70.76 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -35.38 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 113 A SER 113 1_555 A N OAS 114 A OAS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C OAS 114 A OAS 114 1_555 A N LYS 115 A LYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 B C SER 113 B SER 113 1_555 B N OAS 114 B OAS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale4 B C OAS 114 B OAS 114 1_555 B N LYS 115 B LYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6YUS _atom_sites.fract_transf_matrix[1][1] 0.007313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 301 301 COA ACO . D 3 PEG A 1 302 501 PEG PEG . E 2 COA B 1 301 301 COA ACO . F 4 EDO B 1 302 401 EDO EDO . G 3 PEG B 1 303 601 PEG PEG . H 5 HOH A 1 401 39 HOH HOH . H 5 HOH A 2 402 12 HOH HOH . H 5 HOH A 3 403 3 HOH HOH . H 5 HOH A 4 404 27 HOH HOH . H 5 HOH A 5 405 37 HOH HOH . H 5 HOH A 6 406 1 HOH HOH . H 5 HOH A 7 407 23 HOH HOH . H 5 HOH A 8 408 8 HOH HOH . H 5 HOH A 9 409 5 HOH HOH . H 5 HOH A 10 410 11 HOH HOH . H 5 HOH A 11 411 13 HOH HOH . H 5 HOH A 12 412 17 HOH HOH . H 5 HOH A 13 413 34 HOH HOH . H 5 HOH A 14 414 38 HOH HOH . H 5 HOH A 15 415 26 HOH HOH . H 5 HOH A 16 416 35 HOH HOH . H 5 HOH A 17 417 24 HOH HOH . H 5 HOH A 18 418 16 HOH HOH . H 5 HOH A 19 419 30 HOH HOH . H 5 HOH A 20 420 31 HOH HOH . H 5 HOH A 21 421 14 HOH HOH . I 5 HOH B 1 401 28 HOH HOH . I 5 HOH B 2 402 33 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 20 HOH HOH . I 5 HOH B 5 405 6 HOH HOH . I 5 HOH B 6 406 32 HOH HOH . I 5 HOH B 7 407 7 HOH HOH . I 5 HOH B 8 408 2 HOH HOH . I 5 HOH B 9 409 15 HOH HOH . I 5 HOH B 10 410 25 HOH HOH . I 5 HOH B 11 411 10 HOH HOH . I 5 HOH B 12 412 19 HOH HOH . I 5 HOH B 13 413 40 HOH HOH . I 5 HOH B 14 414 4 HOH HOH . I 5 HOH B 15 415 22 HOH HOH . I 5 HOH B 16 416 29 HOH HOH . I 5 HOH B 17 417 18 HOH HOH . I 5 HOH B 18 418 21 HOH HOH . I 5 HOH B 19 419 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . C 2 5.718 26.705 -34.176 1 104.27 ? N1A COA 301 A 1 HETATM 2 C C2A COA . . . C 2 6.676 26.811 -35.11 1 102.71 ? C2A COA 301 A 1 HETATM 3 N N3A COA . . . C 2 6.762 27.937 -35.89 1 99.96 ? N3A COA 301 A 1 HETATM 4 C C4A COA . . . C 2 5.864 28.955 -35.722 1 102.1 ? C4A COA 301 A 1 HETATM 5 C C5A COA . . . C 2 4.908 28.872 -34.803 1 98.32 ? C5A COA 301 A 1 HETATM 6 C C6A COA . . . C 2 4.82 27.716 -34 1 101.15 ? C6A COA 301 A 1 HETATM 7 N N6A COA . . . C 2 3.903 27.241 -32.871 1 98.13 ? N6A COA 301 A 1 HETATM 8 N N7A COA . . . C 2 4.172 30.006 -34.852 1 91.86 ? N7A COA 301 A 1 HETATM 9 C C8A COA . . . C 2 4.686 30.79 -35.809 1 97.34 ? C8A COA 301 A 1 HETATM 10 N N9A COA . . . C 2 5.728 30.147 -36.348 1 104.57 ? N9A COA 301 A 1 HETATM 11 C C1B COA . . . C 2 6.54 30.601 -37.391 1 105.09 ? C1B COA 301 A 1 HETATM 12 C C2B COA . . . C 2 5.928 30.42 -38.558 1 109.63 ? C2B COA 301 A 1 HETATM 13 O O2B COA . . . C 2 6.189 29.071 -39.083 1 110.52 ? O2B COA 301 A 1 HETATM 14 C C3B COA . . . C 2 6.563 31.511 -39.443 1 114.01 ? C3B COA 301 A 1 HETATM 15 O O3B COA . . . C 2 7.834 31.159 -39.752 1 122.6 ? O3B COA 301 A 1 HETATM 16 P P3B COA . . . C 2 8.328 30.809 -41.328 1 128.25 ? P3B COA 301 A 1 HETATM 17 O O7A COA . . . C 2 7.264 31.161 -42.316 1 118.77 ? O7A COA 301 A 1 HETATM 18 O O8A COA . . . C 2 9.543 31.574 -41.635 1 119.86 ? O8A COA 301 A 1 HETATM 19 O O9A COA . . . C 2 8.631 29.365 -41.387 1 120.09 ? O9A COA 301 A 1 HETATM 20 C C4B COA . . . C 2 6.622 32.738 -38.455 1 107.54 ? C4B COA 301 A 1 HETATM 21 O O4B COA . . . C 2 6.708 32.225 -37.258 1 104.2 ? O4B COA 301 A 1 HETATM 22 C C5B COA . . . C 2 5.373 33.627 -38.55 1 101.44 ? C5B COA 301 A 1 HETATM 23 O O5B COA . . . C 2 5.723 34.639 -39.492 1 100.6 ? O5B COA 301 A 1 HETATM 24 P P1A COA . . . C 2 4.945 36.221 -39.516 1 101.37 ? P1A COA 301 A 1 HETATM 25 O O1A COA . . . C 2 5.763 37.182 -38.656 1 103.63 ? O1A COA 301 A 1 HETATM 26 O O2A COA . . . C 2 3.45 36.098 -39.024 1 94.59 ? O2A COA 301 A 1 HETATM 27 O O3A COA . . . C 2 5.003 36.844 -40.994 1 109.97 ? O3A COA 301 A 1 HETATM 28 P P2A COA . . . C 2 4.509 36.093 -42.411 1 111.31 ? P2A COA 301 A 1 HETATM 29 O O4A COA . . . C 2 5.155 36.816 -43.552 1 105.01 ? O4A COA 301 A 1 HETATM 30 O O5A COA . . . C 2 4.875 34.619 -42.358 1 98.8 ? O5A COA 301 A 1 HETATM 31 O O6A COA . . . C 2 2.825 36.283 -42.574 1 107.15 ? O6A COA 301 A 1 HETATM 32 C CBP COA . . . C 2 0.683 35.501 -42.149 1 105.05 ? CBP COA 301 A 1 HETATM 33 C CCP COA . . . C 2 2.099 35.11 -42.456 1 104.2 ? CCP COA 301 A 1 HETATM 34 C CDP COA . . . C 2 -0.235 34.587 -42.934 1 101.37 ? CDP COA 301 A 1 HETATM 35 C CEP COA . . . C 2 0.425 36.994 -42.568 1 99.92 ? CEP COA 301 A 1 HETATM 36 C CAP COA . . . C 2 0.525 35.346 -40.609 1 100.5 ? CAP COA 301 A 1 HETATM 37 O OAP COA . . . C 2 0.912 36.57 -39.954 1 96.39 ? OAP COA 301 A 1 HETATM 38 C C9P COA . . . C 2 -0.907 35.047 -40.291 1 97.87 ? C9P COA 301 A 1 HETATM 39 O O9P COA . . . C 2 -1.314 33.904 -40.249 1 97.23 ? O9P COA 301 A 1 HETATM 40 N N8P COA . . . C 2 -1.803 36.19 -40.008 1 93.47 ? N8P COA 301 A 1 HETATM 41 C C7P COA . . . C 2 -3.181 35.916 -39.697 1 89.75 ? C7P COA 301 A 1 HETATM 42 C C6P COA . . . C 2 -4.088 36.963 -40.532 1 86.14 ? C6P COA 301 A 1 HETATM 43 C C5P COA . . . C 2 -5.586 36.523 -40.283 1 87.04 ? C5P COA 301 A 1 HETATM 44 O O5P COA . . . C 2 -6.42 37.34 -40.144 1 87.35 ? O5P COA 301 A 1 HETATM 45 N N4P COA . . . C 2 -5.879 35.088 -40.22 1 89.29 ? N4P COA 301 A 1 HETATM 46 C C3P COA . . . C 2 -7.287 34.602 -39.994 1 88.64 ? C3P COA 301 A 1 HETATM 47 C C2P COA . . . C 2 -8.087 34.771 -41.305 1 89.71 ? C2P COA 301 A 1 HETATM 48 S S1P COA . . . C 2 -9.808 34.341 -41.037 1 97.09 ? S1P COA 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #