data_6YUS # _model_server_result.job_id O-KdIRvQ3nYj-d8Ax6_x7A _model_server_result.datetime_utc '2025-03-05 01:13:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6YUS # _exptl.entry_id 6YUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUS _cell.length_a 136.74 _cell.length_b 136.74 _cell.length_c 70.76 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -35.38 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 113 A SER 113 1_555 A N OAS 114 A OAS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C OAS 114 A OAS 114 1_555 A N LYS 115 A LYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 B C SER 113 B SER 113 1_555 B N OAS 114 B OAS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale4 B C OAS 114 B OAS 114 1_555 B N LYS 115 B LYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 350 n n C1 C2 PEG sing 351 n n C1 H11 PEG sing 352 n n C1 H12 PEG sing 353 n n O1 HO1 PEG sing 354 n n C2 O2 PEG sing 355 n n C2 H21 PEG sing 356 n n C2 H22 PEG sing 357 n n O2 C3 PEG sing 358 n n C3 C4 PEG sing 359 n n C3 H31 PEG sing 360 n n C3 H32 PEG sing 361 n n C4 O4 PEG sing 362 n n C4 H41 PEG sing 363 n n C4 H42 PEG sing 364 n n O4 HO4 PEG sing 365 n n # _atom_sites.entry_id 6YUS _atom_sites.fract_transf_matrix[1][1] 0.007313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 301 301 COA ACO . D 3 PEG A 1 302 501 PEG PEG . E 2 COA B 1 301 301 COA ACO . F 4 EDO B 1 302 401 EDO EDO . G 3 PEG B 1 303 601 PEG PEG . H 5 HOH A 1 401 39 HOH HOH . H 5 HOH A 2 402 12 HOH HOH . H 5 HOH A 3 403 3 HOH HOH . H 5 HOH A 4 404 27 HOH HOH . H 5 HOH A 5 405 37 HOH HOH . H 5 HOH A 6 406 1 HOH HOH . H 5 HOH A 7 407 23 HOH HOH . H 5 HOH A 8 408 8 HOH HOH . H 5 HOH A 9 409 5 HOH HOH . H 5 HOH A 10 410 11 HOH HOH . H 5 HOH A 11 411 13 HOH HOH . H 5 HOH A 12 412 17 HOH HOH . H 5 HOH A 13 413 34 HOH HOH . H 5 HOH A 14 414 38 HOH HOH . H 5 HOH A 15 415 26 HOH HOH . H 5 HOH A 16 416 35 HOH HOH . H 5 HOH A 17 417 24 HOH HOH . H 5 HOH A 18 418 16 HOH HOH . H 5 HOH A 19 419 30 HOH HOH . H 5 HOH A 20 420 31 HOH HOH . H 5 HOH A 21 421 14 HOH HOH . I 5 HOH B 1 401 28 HOH HOH . I 5 HOH B 2 402 33 HOH HOH . I 5 HOH B 3 403 9 HOH HOH . I 5 HOH B 4 404 20 HOH HOH . I 5 HOH B 5 405 6 HOH HOH . I 5 HOH B 6 406 32 HOH HOH . I 5 HOH B 7 407 7 HOH HOH . I 5 HOH B 8 408 2 HOH HOH . I 5 HOH B 9 409 15 HOH HOH . I 5 HOH B 10 410 25 HOH HOH . I 5 HOH B 11 411 10 HOH HOH . I 5 HOH B 12 412 19 HOH HOH . I 5 HOH B 13 413 40 HOH HOH . I 5 HOH B 14 414 4 HOH HOH . I 5 HOH B 15 415 22 HOH HOH . I 5 HOH B 16 416 29 HOH HOH . I 5 HOH B 17 417 18 HOH HOH . I 5 HOH B 18 418 21 HOH HOH . I 5 HOH B 19 419 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 19.485 43.379 -17.81 1 82.3 ? C1 PEG 302 A 1 HETATM 2 O O1 PEG . . . D 3 19.401 43.108 -19.184 1 88.46 ? O1 PEG 302 A 1 HETATM 3 C C2 PEG . . . D 3 19.023 42.165 -17.001 1 89.82 ? C2 PEG 302 A 1 HETATM 4 O O2 PEG . . . D 3 17.721 42.31 -16.5 1 87.21 ? O2 PEG 302 A 1 HETATM 5 C C3 PEG . . . D 3 17.313 41.149 -15.815 1 90.97 ? C3 PEG 302 A 1 HETATM 6 C C4 PEG . . . D 3 15.809 40.886 -15.962 1 86.45 ? C4 PEG 302 A 1 HETATM 7 O O4 PEG . . . D 3 15.347 41.419 -17.172 1 84.64 ? O4 PEG 302 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #