data_6YUY # _model_server_result.job_id t0gxfMAGrHOGXBUNKmhuWQ _model_server_result.datetime_utc '2024-11-22 22:37:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":518}' # _entry.id 6YUY # _exptl.entry_id 6YUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 193.123 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methyl-5-(trifluoromethyl)-1~{H}-pyrrole-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YUY _cell.length_a 59.4 _cell.length_b 73.08 _cell.length_c 78.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 T C1 NAG . A NAG 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C7 H6 F3 N O2' _chem_comp.formula_weight 193.123 _chem_comp.id PQH _chem_comp.mon_nstd_flag . _chem_comp.name '2-methyl-5-(trifluoromethyl)-1~{H}-pyrrole-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C2 PQH sing 299 n n C2 F PQH sing 300 n n C2 F1 PQH sing 301 n n C2 C1 PQH sing 302 n n N C1 PQH sing 303 n y N C3 PQH sing 304 n y C6 C3 PQH sing 305 n n C1 C PQH doub 306 n y C3 C4 PQH doub 307 n y C C4 PQH sing 308 n y C4 C5 PQH sing 309 n n O1 C5 PQH sing 310 n n C5 O PQH doub 311 n n N H1 PQH sing 312 n n C H2 PQH sing 313 n n C6 H5 PQH sing 314 n n C6 H3 PQH sing 315 n n C6 H4 PQH sing 316 n n O1 H PQH sing 317 n n # _atom_sites.entry_id 6YUY _atom_sites.fract_transf_matrix[1][1] 0.016835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1 SO4 SO4 . C 2 SO4 A 1 502 2 SO4 SO4 . D 2 SO4 A 1 503 3 SO4 SO4 . E 2 SO4 A 1 504 4 SO4 SO4 . F 2 SO4 A 1 505 5 SO4 SO4 . G 2 SO4 A 1 506 6 SO4 SO4 . H 2 SO4 A 1 507 7 SO4 SO4 . I 2 SO4 A 1 508 8 SO4 SO4 . J 2 SO4 A 1 509 9 SO4 SO4 . K 2 SO4 A 1 510 10 SO4 SO4 . L 2 SO4 A 1 511 11 SO4 SO4 . M 2 SO4 A 1 512 12 SO4 SO4 . N 2 SO4 A 1 513 601 SO4 SO4 . O 2 SO4 A 1 514 701 SO4 SO4 . P 2 SO4 A 1 515 801 SO4 SO4 . Q 2 SO4 A 1 516 901 SO4 SO4 . R 3 DMS A 1 517 1201 DMS DMS . S 4 PQH A 1 518 1001 PQH 471 . T 5 NAG A 1 519 1102 NAG NAG . U 6 HOH A 1 601 104 HOH HOH . U 6 HOH A 2 602 82 HOH HOH . U 6 HOH A 3 603 90 HOH HOH . U 6 HOH A 4 604 30 HOH HOH . U 6 HOH A 5 605 59 HOH HOH . U 6 HOH A 6 606 53 HOH HOH . U 6 HOH A 7 607 103 HOH HOH . U 6 HOH A 8 608 40 HOH HOH . U 6 HOH A 9 609 118 HOH HOH . U 6 HOH A 10 610 75 HOH HOH . U 6 HOH A 11 611 100 HOH HOH . U 6 HOH A 12 612 34 HOH HOH . U 6 HOH A 13 613 35 HOH HOH . U 6 HOH A 14 614 33 HOH HOH . U 6 HOH A 15 615 32 HOH HOH . U 6 HOH A 16 616 69 HOH HOH . U 6 HOH A 17 617 29 HOH HOH . U 6 HOH A 18 618 67 HOH HOH . U 6 HOH A 19 619 27 HOH HOH . U 6 HOH A 20 620 2 HOH HOH . U 6 HOH A 21 621 106 HOH HOH . U 6 HOH A 22 622 91 HOH HOH . U 6 HOH A 23 623 60 HOH HOH . U 6 HOH A 24 624 4 HOH HOH . U 6 HOH A 25 625 99 HOH HOH . U 6 HOH A 26 626 11 HOH HOH . U 6 HOH A 27 627 31 HOH HOH . U 6 HOH A 28 628 88 HOH HOH . U 6 HOH A 29 629 76 HOH HOH . U 6 HOH A 30 630 56 HOH HOH . U 6 HOH A 31 631 77 HOH HOH . U 6 HOH A 32 632 117 HOH HOH . U 6 HOH A 33 633 14 HOH HOH . U 6 HOH A 34 634 83 HOH HOH . U 6 HOH A 35 635 92 HOH HOH . U 6 HOH A 36 636 17 HOH HOH . U 6 HOH A 37 637 19 HOH HOH . U 6 HOH A 38 638 13 HOH HOH . U 6 HOH A 39 639 1 HOH HOH . U 6 HOH A 40 640 64 HOH HOH . U 6 HOH A 41 641 21 HOH HOH . U 6 HOH A 42 642 36 HOH HOH . U 6 HOH A 43 643 58 HOH HOH . U 6 HOH A 44 644 61 HOH HOH . U 6 HOH A 45 645 8 HOH HOH . U 6 HOH A 46 646 10 HOH HOH . U 6 HOH A 47 647 97 HOH HOH . U 6 HOH A 48 648 108 HOH HOH . U 6 HOH A 49 649 50 HOH HOH . U 6 HOH A 50 650 71 HOH HOH . U 6 HOH A 51 651 54 HOH HOH . U 6 HOH A 52 652 26 HOH HOH . U 6 HOH A 53 653 43 HOH HOH . U 6 HOH A 54 654 114 HOH HOH . U 6 HOH A 55 655 12 HOH HOH . U 6 HOH A 56 656 3 HOH HOH . U 6 HOH A 57 657 7 HOH HOH . U 6 HOH A 58 658 46 HOH HOH . U 6 HOH A 59 659 70 HOH HOH . U 6 HOH A 60 660 101 HOH HOH . U 6 HOH A 61 661 44 HOH HOH . U 6 HOH A 62 662 47 HOH HOH . U 6 HOH A 63 663 23 HOH HOH . U 6 HOH A 64 664 52 HOH HOH . U 6 HOH A 65 665 45 HOH HOH . U 6 HOH A 66 666 6 HOH HOH . U 6 HOH A 67 667 20 HOH HOH . U 6 HOH A 68 668 51 HOH HOH . U 6 HOH A 69 669 93 HOH HOH . U 6 HOH A 70 670 48 HOH HOH . U 6 HOH A 71 671 72 HOH HOH . U 6 HOH A 72 672 22 HOH HOH . U 6 HOH A 73 673 62 HOH HOH . U 6 HOH A 74 674 79 HOH HOH . U 6 HOH A 75 675 73 HOH HOH . U 6 HOH A 76 676 55 HOH HOH . U 6 HOH A 77 677 16 HOH HOH . U 6 HOH A 78 678 42 HOH HOH . U 6 HOH A 79 679 18 HOH HOH . U 6 HOH A 80 680 24 HOH HOH . U 6 HOH A 81 681 112 HOH HOH . U 6 HOH A 82 682 107 HOH HOH . U 6 HOH A 83 683 102 HOH HOH . U 6 HOH A 84 684 95 HOH HOH . U 6 HOH A 85 685 9 HOH HOH . U 6 HOH A 86 686 15 HOH HOH . U 6 HOH A 87 687 110 HOH HOH . U 6 HOH A 88 688 63 HOH HOH . U 6 HOH A 89 689 37 HOH HOH . U 6 HOH A 90 690 81 HOH HOH . U 6 HOH A 91 691 5 HOH HOH . U 6 HOH A 92 692 38 HOH HOH . U 6 HOH A 93 693 49 HOH HOH . U 6 HOH A 94 694 25 HOH HOH . U 6 HOH A 95 695 28 HOH HOH . U 6 HOH A 96 696 94 HOH HOH . U 6 HOH A 97 697 115 HOH HOH . U 6 HOH A 98 698 65 HOH HOH . U 6 HOH A 99 699 78 HOH HOH . U 6 HOH A 100 700 39 HOH HOH . U 6 HOH A 101 701 74 HOH HOH . U 6 HOH A 102 702 66 HOH HOH . U 6 HOH A 103 703 80 HOH HOH . U 6 HOH A 104 704 111 HOH HOH . U 6 HOH A 105 705 105 HOH HOH . U 6 HOH A 106 706 57 HOH HOH . U 6 HOH A 107 707 87 HOH HOH . U 6 HOH A 108 708 116 HOH HOH . U 6 HOH A 109 709 84 HOH HOH . U 6 HOH A 110 710 85 HOH HOH . U 6 HOH A 111 711 89 HOH HOH . U 6 HOH A 112 712 98 HOH HOH . U 6 HOH A 113 713 96 HOH HOH . U 6 HOH A 114 714 68 HOH HOH . U 6 HOH A 115 715 41 HOH HOH . U 6 HOH A 116 716 109 HOH HOH . U 6 HOH A 117 717 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PQH . A . S 4 1.966 -4.181 4.167 0.48 47.94 ? N PQH 518 A 1 HETATM 2 N N PQH . B . S 4 2.571 -6.632 6.7 0.52 50.71 ? N PQH 518 A 1 HETATM 3 C C PQH . A . S 4 1.409 -5.702 5.677 0.48 47.58 ? C PQH 518 A 1 HETATM 4 C C PQH . B . S 4 1.607 -5.083 5.438 0.52 48.33 ? C PQH 518 A 1 HETATM 5 O O PQH . A . S 4 3.052 -6.463 7.933 0.48 53.79 ? O PQH 518 A 1 HETATM 6 O O PQH . B . S 4 2.942 -3.215 3.835 0.52 49.31 ? O PQH 518 A 1 HETATM 7 C C1 PQH . A . S 4 0.945 -4.983 4.612 0.48 46.27 ? C1 PQH 518 A 1 HETATM 8 C C1 PQH . B . S 4 1.388 -6.234 6.119 0.52 47.26 ? C1 PQH 518 A 1 HETATM 9 C C2 PQH . A . S 4 -0.374 -5.014 3.927 0.48 43.72 ? C2 PQH 518 A 1 HETATM 10 C C2 PQH . B . S 4 0.159 -7.04 6.237 0.52 40.46 ? C2 PQH 518 A 1 HETATM 11 C C3 PQH . A . S 4 3.094 -4.374 4.907 0.48 49.84 ? C3 PQH 518 A 1 HETATM 12 C C3 PQH . B . S 4 3.565 -5.757 6.391 0.52 52.15 ? C3 PQH 518 A 1 HETATM 13 C C4 PQH . A . S 4 2.763 -5.34 5.88 0.48 49.87 ? C4 PQH 518 A 1 HETATM 14 C C4 PQH . B . S 4 2.973 -4.754 5.582 0.52 49.85 ? C4 PQH 518 A 1 HETATM 15 C C5 PQH . A . S 4 3.575 -5.973 6.943 0.48 52.86 ? C5 PQH 518 A 1 HETATM 16 C C5 PQH . B . S 4 3.466 -3.562 4.882 0.52 49.96 ? C5 PQH 518 A 1 HETATM 17 C C6 PQH . A . S 4 4.385 -3.694 4.591 0.48 50.82 ? C6 PQH 518 A 1 HETATM 18 C C6 PQH . B . S 4 4.976 -5.954 6.861 0.52 55.23 ? C6 PQH 518 A 1 HETATM 19 F F PQH . A . S 4 -1.08 -3.928 4.164 0.48 43.47 ? F PQH 518 A 1 HETATM 20 F F PQH . B . S 4 0.366 -8.286 5.928 0.52 34.93 ? F PQH 518 A 1 HETATM 21 F F1 PQH . A . S 4 -1.113 -6.04 4.325 0.48 41.42 ? F1 PQH 518 A 1 HETATM 22 F F1 PQH . B . S 4 -0.792 -6.597 5.417 0.52 37.96 ? F1 PQH 518 A 1 HETATM 23 F F2 PQH . A . S 4 -0.249 -5.111 2.617 0.48 42.65 ? F2 PQH 518 A 1 HETATM 24 F F2 PQH . B . S 4 -0.327 -7.024 7.462 0.52 38.6 ? F2 PQH 518 A 1 HETATM 25 O O1 PQH . A . S 4 4.862 -6.005 6.722 0.48 55 ? O1 PQH 518 A 1 HETATM 26 O O1 PQH . B . S 4 4.44 -2.914 5.457 0.52 52.72 ? O1 PQH 518 A 1 HETATM 27 H H1 PQH . A . S 4 1.881 -3.535 3.39 0.48 57.35 ? H1 PQH 518 A 1 HETATM 28 H H1 PQH . B . S 4 2.675 -7.463 7.275 0.52 60.67 ? H1 PQH 518 A 1 HETATM 29 H H2 PQH . A . S 4 0.836 -6.421 6.261 0.48 56.92 ? H2 PQH 518 A 1 HETATM 30 H H2 PQH . B . S 4 0.861 -4.519 4.881 0.52 57.82 ? H2 PQH 518 A 1 HETATM 31 H H5 PQH . A . S 4 4.285 -2.617 4.46 0.48 60.8 ? H5 PQH 518 A 1 HETATM 32 H H5 PQH . B . S 4 5.719 -5.782 6.084 0.52 66.09 ? H5 PQH 518 A 1 HETATM 33 H H3 PQH . A . S 4 4.85 -4.053 3.675 0.48 60.8 ? H3 PQH 518 A 1 HETATM 34 H H3 PQH . B . S 4 5.173 -6.96 7.229 0.52 66.09 ? H3 PQH 518 A 1 HETATM 35 H H4 PQH . A . S 4 5.14 -3.82 5.365 0.48 60.8 ? H4 PQH 518 A 1 HETATM 36 H H4 PQH . B . S 4 5.257 -5.29 7.678 0.52 66.09 ? H4 PQH 518 A 1 HETATM 37 H H PQH . A . S 4 5.086 -5.601 5.843 0.48 65.82 ? H PQH 518 A 1 HETATM 38 H H PQH . B . S 4 4.706 -3.35 6.309 0.52 63.08 ? H PQH 518 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #