data_6YV0 # _model_server_result.job_id QG7EyPDsDuphS1GsReSXpQ _model_server_result.datetime_utc '2024-11-05 16:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6YV0 # _exptl.entry_id 6YV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YV0 _cell.length_a 59.44 _cell.length_b 73.22 _cell.length_c 78.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YV0 _atom_sites.fract_transf_matrix[1][1] 0.016824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 EDO A 1 502 2 EDO EDO . D 3 EDO A 1 503 5 EDO EDO . E 3 EDO A 1 504 6 EDO EDO . F 3 EDO A 1 505 7 EDO EDO . G 4 PQT A 1 506 1501 PQT 587 . H 5 NAG A 1 507 1502 NAG NAG . I 6 HOH A 1 601 96 HOH HOH . I 6 HOH A 2 602 92 HOH HOH . I 6 HOH A 3 603 89 HOH HOH . I 6 HOH A 4 604 43 HOH HOH . I 6 HOH A 5 605 118 HOH HOH . I 6 HOH A 6 606 78 HOH HOH . I 6 HOH A 7 607 51 HOH HOH . I 6 HOH A 8 608 114 HOH HOH . I 6 HOH A 9 609 65 HOH HOH . I 6 HOH A 10 610 90 HOH HOH . I 6 HOH A 11 611 45 HOH HOH . I 6 HOH A 12 612 29 HOH HOH . I 6 HOH A 13 613 44 HOH HOH . I 6 HOH A 14 614 53 HOH HOH . I 6 HOH A 15 615 52 HOH HOH . I 6 HOH A 16 616 35 HOH HOH . I 6 HOH A 17 617 26 HOH HOH . I 6 HOH A 18 618 30 HOH HOH . I 6 HOH A 19 619 23 HOH HOH . I 6 HOH A 20 620 99 HOH HOH . I 6 HOH A 21 621 40 HOH HOH . I 6 HOH A 22 622 67 HOH HOH . I 6 HOH A 23 623 31 HOH HOH . I 6 HOH A 24 624 75 HOH HOH . I 6 HOH A 25 625 21 HOH HOH . I 6 HOH A 26 626 58 HOH HOH . I 6 HOH A 27 627 1 HOH HOH . I 6 HOH A 28 628 3 HOH HOH . I 6 HOH A 29 629 13 HOH HOH . I 6 HOH A 30 630 4 HOH HOH . I 6 HOH A 31 631 94 HOH HOH . I 6 HOH A 32 632 18 HOH HOH . I 6 HOH A 33 633 101 HOH HOH . I 6 HOH A 34 634 2 HOH HOH . I 6 HOH A 35 635 115 HOH HOH . I 6 HOH A 36 636 60 HOH HOH . I 6 HOH A 37 637 41 HOH HOH . I 6 HOH A 38 638 32 HOH HOH . I 6 HOH A 39 639 70 HOH HOH . I 6 HOH A 40 640 69 HOH HOH . I 6 HOH A 41 641 116 HOH HOH . I 6 HOH A 42 642 95 HOH HOH . I 6 HOH A 43 643 46 HOH HOH . I 6 HOH A 44 644 24 HOH HOH . I 6 HOH A 45 645 63 HOH HOH . I 6 HOH A 46 646 5 HOH HOH . I 6 HOH A 47 647 57 HOH HOH . I 6 HOH A 48 648 19 HOH HOH . I 6 HOH A 49 649 112 HOH HOH . I 6 HOH A 50 650 91 HOH HOH . I 6 HOH A 51 651 20 HOH HOH . I 6 HOH A 52 652 79 HOH HOH . I 6 HOH A 53 653 6 HOH HOH . I 6 HOH A 54 654 93 HOH HOH . I 6 HOH A 55 655 25 HOH HOH . I 6 HOH A 56 656 48 HOH HOH . I 6 HOH A 57 657 56 HOH HOH . I 6 HOH A 58 658 12 HOH HOH . I 6 HOH A 59 659 10 HOH HOH . I 6 HOH A 60 660 7 HOH HOH . I 6 HOH A 61 661 36 HOH HOH . I 6 HOH A 62 662 86 HOH HOH . I 6 HOH A 63 663 34 HOH HOH . I 6 HOH A 64 664 37 HOH HOH . I 6 HOH A 65 665 84 HOH HOH . I 6 HOH A 66 666 17 HOH HOH . I 6 HOH A 67 667 107 HOH HOH . I 6 HOH A 68 668 55 HOH HOH . I 6 HOH A 69 669 97 HOH HOH . I 6 HOH A 70 670 42 HOH HOH . I 6 HOH A 71 671 50 HOH HOH . I 6 HOH A 72 672 11 HOH HOH . I 6 HOH A 73 673 27 HOH HOH . I 6 HOH A 74 674 38 HOH HOH . I 6 HOH A 75 675 15 HOH HOH . I 6 HOH A 76 676 64 HOH HOH . I 6 HOH A 77 677 9 HOH HOH . I 6 HOH A 78 678 16 HOH HOH . I 6 HOH A 79 679 22 HOH HOH . I 6 HOH A 80 680 83 HOH HOH . I 6 HOH A 81 681 33 HOH HOH . I 6 HOH A 82 682 62 HOH HOH . I 6 HOH A 83 683 85 HOH HOH . I 6 HOH A 84 684 61 HOH HOH . I 6 HOH A 85 685 88 HOH HOH . I 6 HOH A 86 686 14 HOH HOH . I 6 HOH A 87 687 110 HOH HOH . I 6 HOH A 88 688 47 HOH HOH . I 6 HOH A 89 689 105 HOH HOH . I 6 HOH A 90 690 28 HOH HOH . I 6 HOH A 91 691 66 HOH HOH . I 6 HOH A 92 692 59 HOH HOH . I 6 HOH A 93 693 87 HOH HOH . I 6 HOH A 94 694 39 HOH HOH . I 6 HOH A 95 695 82 HOH HOH . I 6 HOH A 96 696 119 HOH HOH . I 6 HOH A 97 697 68 HOH HOH . I 6 HOH A 98 698 81 HOH HOH . I 6 HOH A 99 699 113 HOH HOH . I 6 HOH A 100 700 117 HOH HOH . I 6 HOH A 101 701 74 HOH HOH . I 6 HOH A 102 702 54 HOH HOH . I 6 HOH A 103 703 100 HOH HOH . I 6 HOH A 104 704 106 HOH HOH . I 6 HOH A 105 705 76 HOH HOH . I 6 HOH A 106 706 103 HOH HOH . I 6 HOH A 107 707 49 HOH HOH . I 6 HOH A 108 708 73 HOH HOH . I 6 HOH A 109 709 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 12.86 5.615 -24.351 1 63.39 ? C1 EDO 505 A 1 HETATM 2 O O1 EDO . . . F 3 13.053 5.427 -22.944 1 63.66 ? O1 EDO 505 A 1 HETATM 3 C C2 EDO . . . F 3 11.429 6.069 -24.615 1 59.82 ? C2 EDO 505 A 1 HETATM 4 O O2 EDO . . . F 3 11.184 7.303 -23.932 1 55.89 ? O2 EDO 505 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #