data_6YV0 # _model_server_result.job_id sDWqbUUYyDRBhcm53SRTUA _model_server_result.datetime_utc '2024-11-05 16:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6YV0 # _exptl.entry_id 6YV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.671 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R})-1-(2-chlorophenyl)pyrrolidine-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YV0 _cell.length_a 59.44 _cell.length_b 73.22 _cell.length_c 78.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C11 H12 Cl N O2' _chem_comp.formula_weight 225.671 _chem_comp.id PQT _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R})-1-(2-chlorophenyl)pyrrolidine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C5 PQT doub 299 n y C C1 PQT sing 300 n y C5 C4 PQT sing 301 n y C1 C2 PQT doub 302 n y C4 C3 PQT doub 303 n y O C10 PQT doub 304 n n O1 C10 PQT sing 305 n n C2 C3 PQT sing 306 n y C2 N PQT sing 307 n n C10 C7 PQT sing 308 n n C3 CL PQT sing 309 n n C8 C7 PQT sing 310 n n C8 C9 PQT sing 311 n n N C6 PQT sing 312 n n N C9 PQT sing 313 n n C6 C7 PQT sing 314 n n C1 H1 PQT sing 315 n n C4 H2 PQT sing 316 n n C5 H3 PQT sing 317 n n C6 H4 PQT sing 318 n n C6 H5 PQT sing 319 n n C8 H6 PQT sing 320 n n C8 H7 PQT sing 321 n n C9 H8 PQT sing 322 n n C9 H9 PQT sing 323 n n O1 H10 PQT sing 324 n n C H11 PQT sing 325 n n C7 H12 PQT sing 326 n n # _atom_sites.entry_id 6YV0 _atom_sites.fract_transf_matrix[1][1] 0.016824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 EDO A 1 502 2 EDO EDO . D 3 EDO A 1 503 5 EDO EDO . E 3 EDO A 1 504 6 EDO EDO . F 3 EDO A 1 505 7 EDO EDO . G 4 PQT A 1 506 1501 PQT 587 . H 5 NAG A 1 507 1502 NAG NAG . I 6 HOH A 1 601 96 HOH HOH . I 6 HOH A 2 602 92 HOH HOH . I 6 HOH A 3 603 89 HOH HOH . I 6 HOH A 4 604 43 HOH HOH . I 6 HOH A 5 605 118 HOH HOH . I 6 HOH A 6 606 78 HOH HOH . I 6 HOH A 7 607 51 HOH HOH . I 6 HOH A 8 608 114 HOH HOH . I 6 HOH A 9 609 65 HOH HOH . I 6 HOH A 10 610 90 HOH HOH . I 6 HOH A 11 611 45 HOH HOH . I 6 HOH A 12 612 29 HOH HOH . I 6 HOH A 13 613 44 HOH HOH . I 6 HOH A 14 614 53 HOH HOH . I 6 HOH A 15 615 52 HOH HOH . I 6 HOH A 16 616 35 HOH HOH . I 6 HOH A 17 617 26 HOH HOH . I 6 HOH A 18 618 30 HOH HOH . I 6 HOH A 19 619 23 HOH HOH . I 6 HOH A 20 620 99 HOH HOH . I 6 HOH A 21 621 40 HOH HOH . I 6 HOH A 22 622 67 HOH HOH . I 6 HOH A 23 623 31 HOH HOH . I 6 HOH A 24 624 75 HOH HOH . I 6 HOH A 25 625 21 HOH HOH . I 6 HOH A 26 626 58 HOH HOH . I 6 HOH A 27 627 1 HOH HOH . I 6 HOH A 28 628 3 HOH HOH . I 6 HOH A 29 629 13 HOH HOH . I 6 HOH A 30 630 4 HOH HOH . I 6 HOH A 31 631 94 HOH HOH . I 6 HOH A 32 632 18 HOH HOH . I 6 HOH A 33 633 101 HOH HOH . I 6 HOH A 34 634 2 HOH HOH . I 6 HOH A 35 635 115 HOH HOH . I 6 HOH A 36 636 60 HOH HOH . I 6 HOH A 37 637 41 HOH HOH . I 6 HOH A 38 638 32 HOH HOH . I 6 HOH A 39 639 70 HOH HOH . I 6 HOH A 40 640 69 HOH HOH . I 6 HOH A 41 641 116 HOH HOH . I 6 HOH A 42 642 95 HOH HOH . I 6 HOH A 43 643 46 HOH HOH . I 6 HOH A 44 644 24 HOH HOH . I 6 HOH A 45 645 63 HOH HOH . I 6 HOH A 46 646 5 HOH HOH . I 6 HOH A 47 647 57 HOH HOH . I 6 HOH A 48 648 19 HOH HOH . I 6 HOH A 49 649 112 HOH HOH . I 6 HOH A 50 650 91 HOH HOH . I 6 HOH A 51 651 20 HOH HOH . I 6 HOH A 52 652 79 HOH HOH . I 6 HOH A 53 653 6 HOH HOH . I 6 HOH A 54 654 93 HOH HOH . I 6 HOH A 55 655 25 HOH HOH . I 6 HOH A 56 656 48 HOH HOH . I 6 HOH A 57 657 56 HOH HOH . I 6 HOH A 58 658 12 HOH HOH . I 6 HOH A 59 659 10 HOH HOH . I 6 HOH A 60 660 7 HOH HOH . I 6 HOH A 61 661 36 HOH HOH . I 6 HOH A 62 662 86 HOH HOH . I 6 HOH A 63 663 34 HOH HOH . I 6 HOH A 64 664 37 HOH HOH . I 6 HOH A 65 665 84 HOH HOH . I 6 HOH A 66 666 17 HOH HOH . I 6 HOH A 67 667 107 HOH HOH . I 6 HOH A 68 668 55 HOH HOH . I 6 HOH A 69 669 97 HOH HOH . I 6 HOH A 70 670 42 HOH HOH . I 6 HOH A 71 671 50 HOH HOH . I 6 HOH A 72 672 11 HOH HOH . I 6 HOH A 73 673 27 HOH HOH . I 6 HOH A 74 674 38 HOH HOH . I 6 HOH A 75 675 15 HOH HOH . I 6 HOH A 76 676 64 HOH HOH . I 6 HOH A 77 677 9 HOH HOH . I 6 HOH A 78 678 16 HOH HOH . I 6 HOH A 79 679 22 HOH HOH . I 6 HOH A 80 680 83 HOH HOH . I 6 HOH A 81 681 33 HOH HOH . I 6 HOH A 82 682 62 HOH HOH . I 6 HOH A 83 683 85 HOH HOH . I 6 HOH A 84 684 61 HOH HOH . I 6 HOH A 85 685 88 HOH HOH . I 6 HOH A 86 686 14 HOH HOH . I 6 HOH A 87 687 110 HOH HOH . I 6 HOH A 88 688 47 HOH HOH . I 6 HOH A 89 689 105 HOH HOH . I 6 HOH A 90 690 28 HOH HOH . I 6 HOH A 91 691 66 HOH HOH . I 6 HOH A 92 692 59 HOH HOH . I 6 HOH A 93 693 87 HOH HOH . I 6 HOH A 94 694 39 HOH HOH . I 6 HOH A 95 695 82 HOH HOH . I 6 HOH A 96 696 119 HOH HOH . I 6 HOH A 97 697 68 HOH HOH . I 6 HOH A 98 698 81 HOH HOH . I 6 HOH A 99 699 113 HOH HOH . I 6 HOH A 100 700 117 HOH HOH . I 6 HOH A 101 701 74 HOH HOH . I 6 HOH A 102 702 54 HOH HOH . I 6 HOH A 103 703 100 HOH HOH . I 6 HOH A 104 704 106 HOH HOH . I 6 HOH A 105 705 76 HOH HOH . I 6 HOH A 106 706 103 HOH HOH . I 6 HOH A 107 707 49 HOH HOH . I 6 HOH A 108 708 73 HOH HOH . I 6 HOH A 109 709 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PQT . . . G 4 1.584 -4.307 4.383 1 52.83 ? C1 PQT 506 A 1 HETATM 2 C C2 PQT . . . G 4 1.615 -5.243 5.413 1 52.7 ? C2 PQT 506 A 1 HETATM 3 C C3 PQT . . . G 4 0.5 -6.05 5.625 1 54.81 ? C3 PQT 506 A 1 HETATM 4 C C4 PQT . . . G 4 -0.618 -5.942 4.816 1 53.74 ? C4 PQT 506 A 1 HETATM 5 C C5 PQT . . . G 4 -0.632 -5.008 3.796 1 53.2 ? C5 PQT 506 A 1 HETATM 6 C C6 PQT . . . G 4 3.698 -4.251 6.414 1 52.74 ? C6 PQT 506 A 1 HETATM 7 C C8 PQT . . . G 4 4.904 -6.291 6.055 1 50.68 ? C8 PQT 506 A 1 HETATM 8 C C9 PQT . . . G 4 3.474 -6.623 6.447 1 50.34 ? C9 PQT 506 A 1 HETATM 9 C C10 PQT . . . G 4 6.096 -4.145 5.525 1 50.85 ? C10 PQT 506 A 1 HETATM 10 O O1 PQT . . . G 4 5.881 -2.864 5.388 1 50.6 ? O1 PQT 506 A 1 HETATM 11 N N PQT . . . G 4 2.76 -5.36 6.24 1 51.52 ? N PQT 506 A 1 HETATM 12 C C PQT . . . G 4 0.458 -4.193 3.585 1 52.98 ? C PQT 506 A 1 HETATM 13 O O PQT . . . G 4 6.989 -4.747 4.964 1 51.28 ? O PQT 506 A 1 HETATM 14 C C7 PQT . . . G 4 5.12 -4.82 6.457 1 51.54 ? C7 PQT 506 A 1 HETATM 15 CL CL PQT . . . G 4 0.454 -7.183 6.939 1 59.2 ? CL PQT 506 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #