data_6YV6 # _model_server_result.job_id bNAc-MFx-ovZqZljoRd-eQ _model_server_result.datetime_utc '2024-10-19 19:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6YV6 # _exptl.entry_id 6YV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 6YV6 _cell.length_a 130.69 _cell.length_b 44.31 _cell.length_c 30.81 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6YV6 _atom_sites.fract_transf_matrix[1][1] 0.007652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000393 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 301 301 1PE 1PE . C 2 1PE A 1 302 401 1PE 1PE . D 3 PEG A 1 303 501 PEG PEG . E 4 HOH A 1 401 118 HOH HOH . E 4 HOH A 2 402 12 HOH HOH . E 4 HOH A 3 403 64 HOH HOH . E 4 HOH A 4 404 50 HOH HOH . E 4 HOH A 5 405 115 HOH HOH . E 4 HOH A 6 406 14 HOH HOH . E 4 HOH A 7 407 10 HOH HOH . E 4 HOH A 8 408 52 HOH HOH . E 4 HOH A 9 409 25 HOH HOH . E 4 HOH A 10 410 15 HOH HOH . E 4 HOH A 11 411 38 HOH HOH . E 4 HOH A 12 412 4 HOH HOH . E 4 HOH A 13 413 104 HOH HOH . E 4 HOH A 14 414 90 HOH HOH . E 4 HOH A 15 415 39 HOH HOH . E 4 HOH A 16 416 56 HOH HOH . E 4 HOH A 17 417 83 HOH HOH . E 4 HOH A 18 418 116 HOH HOH . E 4 HOH A 19 419 68 HOH HOH . E 4 HOH A 20 420 100 HOH HOH . E 4 HOH A 21 421 117 HOH HOH . E 4 HOH A 22 422 3 HOH HOH . E 4 HOH A 23 423 72 HOH HOH . E 4 HOH A 24 424 67 HOH HOH . E 4 HOH A 25 425 32 HOH HOH . E 4 HOH A 26 426 66 HOH HOH . E 4 HOH A 27 427 47 HOH HOH . E 4 HOH A 28 428 59 HOH HOH . E 4 HOH A 29 429 46 HOH HOH . E 4 HOH A 30 430 79 HOH HOH . E 4 HOH A 31 431 30 HOH HOH . E 4 HOH A 32 432 11 HOH HOH . E 4 HOH A 33 433 103 HOH HOH . E 4 HOH A 34 434 86 HOH HOH . E 4 HOH A 35 435 44 HOH HOH . E 4 HOH A 36 436 109 HOH HOH . E 4 HOH A 37 437 106 HOH HOH . E 4 HOH A 38 438 20 HOH HOH . E 4 HOH A 39 439 1 HOH HOH . E 4 HOH A 40 440 33 HOH HOH . E 4 HOH A 41 441 105 HOH HOH . E 4 HOH A 42 442 6 HOH HOH . E 4 HOH A 43 443 74 HOH HOH . E 4 HOH A 44 444 24 HOH HOH . E 4 HOH A 45 445 89 HOH HOH . E 4 HOH A 46 446 31 HOH HOH . E 4 HOH A 47 447 27 HOH HOH . E 4 HOH A 48 448 2 HOH HOH . E 4 HOH A 49 449 9 HOH HOH . E 4 HOH A 50 450 23 HOH HOH . E 4 HOH A 51 451 26 HOH HOH . E 4 HOH A 52 452 16 HOH HOH . E 4 HOH A 53 453 18 HOH HOH . E 4 HOH A 54 454 63 HOH HOH . E 4 HOH A 55 455 114 HOH HOH . E 4 HOH A 56 456 53 HOH HOH . E 4 HOH A 57 457 54 HOH HOH . E 4 HOH A 58 458 55 HOH HOH . E 4 HOH A 59 459 73 HOH HOH . E 4 HOH A 60 460 48 HOH HOH . E 4 HOH A 61 461 98 HOH HOH . E 4 HOH A 62 462 65 HOH HOH . E 4 HOH A 63 463 7 HOH HOH . E 4 HOH A 64 464 93 HOH HOH . E 4 HOH A 65 465 21 HOH HOH . E 4 HOH A 66 466 51 HOH HOH . E 4 HOH A 67 467 62 HOH HOH . E 4 HOH A 68 468 75 HOH HOH . E 4 HOH A 69 469 112 HOH HOH . E 4 HOH A 70 470 29 HOH HOH . E 4 HOH A 71 471 91 HOH HOH . E 4 HOH A 72 472 99 HOH HOH . E 4 HOH A 73 473 13 HOH HOH . E 4 HOH A 74 474 94 HOH HOH . E 4 HOH A 75 475 5 HOH HOH . E 4 HOH A 76 476 84 HOH HOH . E 4 HOH A 77 477 35 HOH HOH . E 4 HOH A 78 478 17 HOH HOH . E 4 HOH A 79 479 81 HOH HOH . E 4 HOH A 80 480 108 HOH HOH . E 4 HOH A 81 481 61 HOH HOH . E 4 HOH A 82 482 76 HOH HOH . E 4 HOH A 83 483 121 HOH HOH . E 4 HOH A 84 484 101 HOH HOH . E 4 HOH A 85 485 122 HOH HOH . E 4 HOH A 86 486 60 HOH HOH . E 4 HOH A 87 487 78 HOH HOH . E 4 HOH A 88 488 28 HOH HOH . E 4 HOH A 89 489 70 HOH HOH . E 4 HOH A 90 490 120 HOH HOH . E 4 HOH A 91 491 102 HOH HOH . E 4 HOH A 92 492 34 HOH HOH . E 4 HOH A 93 493 77 HOH HOH . E 4 HOH A 94 494 37 HOH HOH . E 4 HOH A 95 495 22 HOH HOH . E 4 HOH A 96 496 57 HOH HOH . E 4 HOH A 97 497 40 HOH HOH . E 4 HOH A 98 498 119 HOH HOH . E 4 HOH A 99 499 43 HOH HOH . E 4 HOH A 100 500 97 HOH HOH . E 4 HOH A 101 501 45 HOH HOH . E 4 HOH A 102 502 111 HOH HOH . E 4 HOH A 103 503 85 HOH HOH . E 4 HOH A 104 504 19 HOH HOH . E 4 HOH A 105 505 113 HOH HOH . E 4 HOH A 106 506 36 HOH HOH . E 4 HOH A 107 507 88 HOH HOH . E 4 HOH A 108 508 87 HOH HOH . E 4 HOH A 109 509 82 HOH HOH . E 4 HOH A 110 510 80 HOH HOH . E 4 HOH A 111 511 92 HOH HOH . E 4 HOH A 112 512 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 -23.052 23.793 23.94 1 60.33 ? OH2 1PE 301 A 1 HETATM 2 C C12 1PE . . . B 2 -21.914 23.264 23.273 1 58.5 ? C12 1PE 301 A 1 HETATM 3 C C22 1PE . . . B 2 -22.231 22.912 21.851 1 55.77 ? C22 1PE 301 A 1 HETATM 4 O OH3 1PE . . . B 2 -21.196 22.097 21.321 1 54.06 ? OH3 1PE 301 A 1 HETATM 5 C C13 1PE . . . B 2 -20.702 20.234 19.902 1 47.12 ? C13 1PE 301 A 1 HETATM 6 C C23 1PE . . . B 2 -21.664 20.832 20.875 1 50.75 ? C23 1PE 301 A 1 HETATM 7 O OH4 1PE . . . B 2 -19.43 20.044 20.508 1 44.35 ? OH4 1PE 301 A 1 HETATM 8 C C14 1PE . . . B 2 -17.447 21.374 20.406 1 41.5 ? C14 1PE 301 A 1 HETATM 9 C C24 1PE . . . B 2 -18.349 20.445 19.672 1 41.53 ? C24 1PE 301 A 1 HETATM 10 O OH5 1PE . . . B 2 -16.634 22.108 19.505 1 42.96 ? OH5 1PE 301 A 1 HETATM 11 C C15 1PE . . . B 2 -14.883 23.633 20.13 1 49.85 ? C15 1PE 301 A 1 HETATM 12 C C25 1PE . . . B 2 -16.356 23.422 19.973 1 45.63 ? C25 1PE 301 A 1 HETATM 13 O OH6 1PE . . . B 2 -14.611 24.705 21.035 1 53.73 ? OH6 1PE 301 A 1 HETATM 14 C C16 1PE . . . B 2 -12.938 24.39 22.736 1 53.15 ? C16 1PE 301 A 1 HETATM 15 C C26 1PE . . . B 2 -14.392 24.275 22.38 1 53.48 ? C26 1PE 301 A 1 HETATM 16 O OH7 1PE . . . B 2 -12.65 23.652 23.915 1 53.31 ? OH7 1PE 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #