data_6YVG
#
_model_server_result.job_id            1HOl4Jfb421gyeP8r5akDg 
_model_server_result.datetime_utc      '2025-03-06 00:53:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yvg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6YVG 
#
_exptl.entry_id    6YVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.61 
_cell.angle_gamma         90 
_cell.entry_id            6YVG 
_cell.length_a            38.96 
_cell.length_b            56.91 
_cell.length_c            70.92 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            C 
_struct_conn.ptnr1_label_atom_id            I 
_struct_conn.ptnr1_label_comp_id            IOD 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             IOD 
_struct_conn.ptnr1_auth_seq_id              302 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            F 
_struct_conn.ptnr2_label_atom_id            I 
_struct_conn.ptnr2_label_comp_id            IOD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             IOD 
_struct_conn.ptnr2_auth_seq_id              305 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                3.03 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YVG 
_atom_sites.fract_transf_matrix[1][1]    0.025667 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004346 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 301 EDO EDO . 
C 3 IOD A 1 302 1 IOD IOD . 
D 3 IOD A 1 303 2 IOD IOD . 
E 3 IOD A 1 304 3 IOD IOD . 
F 3 IOD A 1 305 4 IOD IOD . 
G 3 IOD A 1 306 6 IOD IOD . 
H 3 IOD A 1 307 7 IOD IOD . 
I 3 IOD A 1 308 8 IOD IOD . 
J 3 IOD A 1 309 9 IOD IOD . 
K 4 HOH A 1 401 13 HOH HOH . 
K 4 HOH A 2 402 18 HOH HOH . 
K 4 HOH A 3 403 41 HOH HOH . 
K 4 HOH A 4 404 59 HOH HOH . 
K 4 HOH A 5 405 29 HOH HOH . 
K 4 HOH A 6 406 26 HOH HOH . 
K 4 HOH A 7 407 3 HOH HOH . 
K 4 HOH A 8 408 48 HOH HOH . 
K 4 HOH A 9 409 4 HOH HOH . 
K 4 HOH A 10 410 16 HOH HOH . 
K 4 HOH A 11 411 19 HOH HOH . 
K 4 HOH A 12 412 43 HOH HOH . 
K 4 HOH A 13 413 11 HOH HOH . 
K 4 HOH A 14 414 6 HOH HOH . 
K 4 HOH A 15 415 23 HOH HOH . 
K 4 HOH A 16 416 57 HOH HOH . 
K 4 HOH A 17 417 15 HOH HOH . 
K 4 HOH A 18 418 7 HOH HOH . 
K 4 HOH A 19 419 8 HOH HOH . 
K 4 HOH A 20 420 53 HOH HOH . 
K 4 HOH A 21 421 17 HOH HOH . 
K 4 HOH A 22 422 20 HOH HOH . 
K 4 HOH A 23 423 45 HOH HOH . 
K 4 HOH A 24 424 24 HOH HOH . 
K 4 HOH A 25 425 21 HOH HOH . 
K 4 HOH A 26 426 38 HOH HOH . 
K 4 HOH A 27 427 14 HOH HOH . 
K 4 HOH A 28 428 1 HOH HOH . 
K 4 HOH A 29 429 5 HOH HOH . 
K 4 HOH A 30 430 39 HOH HOH . 
K 4 HOH A 31 431 9 HOH HOH . 
K 4 HOH A 32 432 10 HOH HOH . 
K 4 HOH A 33 433 22 HOH HOH . 
K 4 HOH A 34 434 50 HOH HOH . 
K 4 HOH A 35 435 40 HOH HOH . 
K 4 HOH A 36 436 2 HOH HOH . 
K 4 HOH A 37 437 37 HOH HOH . 
K 4 HOH A 38 438 12 HOH HOH . 
K 4 HOH A 39 439 33 HOH HOH . 
K 4 HOH A 40 440 31 HOH HOH . 
K 4 HOH A 41 441 30 HOH HOH . 
K 4 HOH A 42 442 44 HOH HOH . 
K 4 HOH A 43 443 28 HOH HOH . 
K 4 HOH A 44 444 49 HOH HOH . 
K 4 HOH A 45 445 51 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -0.674 
_atom_site.Cartn_y               25.012 
_atom_site.Cartn_z               29.675 
_atom_site.occupancy             0.7 
_atom_site.B_iso_or_equiv        72.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#