data_6YVW # _model_server_result.job_id Sztth9HwwnwhO-_UehU1Rg _model_server_result.datetime_utc '2025-02-17 10:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6YVW # _exptl.entry_id 6YVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YVW _cell.length_a 110.175 _cell.length_b 110.175 _cell.length_c 39.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 B FE FE . A FE 501 1_555 C OAD PW5 . A PW5 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 B FE FE . A FE 501 1_555 C NAJ PW5 . A PW5 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc6 B FE FE . A FE 501 1_555 E O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6YVW _atom_sites.fract_transf_matrix[1][1] 0.009076 _atom_sites.fract_transf_matrix[1][2] 0.00524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 501 501 FE FE . C 3 PW5 A 1 502 601 PW5 328 . D 4 GOL A 1 503 701 GOL GOL . E 5 HOH A 1 601 99 HOH HOH . E 5 HOH A 2 602 65 HOH HOH . E 5 HOH A 3 603 139 HOH HOH . E 5 HOH A 4 604 76 HOH HOH . E 5 HOH A 5 605 50 HOH HOH . E 5 HOH A 6 606 104 HOH HOH . E 5 HOH A 7 607 135 HOH HOH . E 5 HOH A 8 608 42 HOH HOH . E 5 HOH A 9 609 80 HOH HOH . E 5 HOH A 10 610 64 HOH HOH . E 5 HOH A 11 611 22 HOH HOH . E 5 HOH A 12 612 121 HOH HOH . E 5 HOH A 13 613 19 HOH HOH . E 5 HOH A 14 614 137 HOH HOH . E 5 HOH A 15 615 92 HOH HOH . E 5 HOH A 16 616 4 HOH HOH . E 5 HOH A 17 617 35 HOH HOH . E 5 HOH A 18 618 44 HOH HOH . E 5 HOH A 19 619 82 HOH HOH . E 5 HOH A 20 620 24 HOH HOH . E 5 HOH A 21 621 3 HOH HOH . E 5 HOH A 22 622 16 HOH HOH . E 5 HOH A 23 623 9 HOH HOH . E 5 HOH A 24 624 57 HOH HOH . E 5 HOH A 25 625 62 HOH HOH . E 5 HOH A 26 626 20 HOH HOH . E 5 HOH A 27 627 79 HOH HOH . E 5 HOH A 28 628 40 HOH HOH . E 5 HOH A 29 629 123 HOH HOH . E 5 HOH A 30 630 118 HOH HOH . E 5 HOH A 31 631 81 HOH HOH . E 5 HOH A 32 632 114 HOH HOH . E 5 HOH A 33 633 46 HOH HOH . E 5 HOH A 34 634 12 HOH HOH . E 5 HOH A 35 635 11 HOH HOH . E 5 HOH A 36 636 1 HOH HOH . E 5 HOH A 37 637 122 HOH HOH . E 5 HOH A 38 638 10 HOH HOH . E 5 HOH A 39 639 5 HOH HOH . E 5 HOH A 40 640 8 HOH HOH . E 5 HOH A 41 641 125 HOH HOH . E 5 HOH A 42 642 102 HOH HOH . E 5 HOH A 43 643 124 HOH HOH . E 5 HOH A 44 644 14 HOH HOH . E 5 HOH A 45 645 70 HOH HOH . E 5 HOH A 46 646 23 HOH HOH . E 5 HOH A 47 647 58 HOH HOH . E 5 HOH A 48 648 112 HOH HOH . E 5 HOH A 49 649 43 HOH HOH . E 5 HOH A 50 650 21 HOH HOH . E 5 HOH A 51 651 31 HOH HOH . E 5 HOH A 52 652 29 HOH HOH . E 5 HOH A 53 653 2 HOH HOH . E 5 HOH A 54 654 95 HOH HOH . E 5 HOH A 55 655 52 HOH HOH . E 5 HOH A 56 656 54 HOH HOH . E 5 HOH A 57 657 34 HOH HOH . E 5 HOH A 58 658 138 HOH HOH . E 5 HOH A 59 659 17 HOH HOH . E 5 HOH A 60 660 15 HOH HOH . E 5 HOH A 61 661 26 HOH HOH . E 5 HOH A 62 662 59 HOH HOH . E 5 HOH A 63 663 39 HOH HOH . E 5 HOH A 64 664 105 HOH HOH . E 5 HOH A 65 665 6 HOH HOH . E 5 HOH A 66 666 7 HOH HOH . E 5 HOH A 67 667 56 HOH HOH . E 5 HOH A 68 668 66 HOH HOH . E 5 HOH A 69 669 63 HOH HOH . E 5 HOH A 70 670 38 HOH HOH . E 5 HOH A 71 671 53 HOH HOH . E 5 HOH A 72 672 127 HOH HOH . E 5 HOH A 73 673 103 HOH HOH . E 5 HOH A 74 674 107 HOH HOH . E 5 HOH A 75 675 47 HOH HOH . E 5 HOH A 76 676 13 HOH HOH . E 5 HOH A 77 677 28 HOH HOH . E 5 HOH A 78 678 37 HOH HOH . E 5 HOH A 79 679 36 HOH HOH . E 5 HOH A 80 680 132 HOH HOH . E 5 HOH A 81 681 25 HOH HOH . E 5 HOH A 82 682 30 HOH HOH . E 5 HOH A 83 683 84 HOH HOH . E 5 HOH A 84 684 133 HOH HOH . E 5 HOH A 85 685 110 HOH HOH . E 5 HOH A 86 686 41 HOH HOH . E 5 HOH A 87 687 48 HOH HOH . E 5 HOH A 88 688 128 HOH HOH . E 5 HOH A 89 689 106 HOH HOH . E 5 HOH A 90 690 51 HOH HOH . E 5 HOH A 91 691 32 HOH HOH . E 5 HOH A 92 692 27 HOH HOH . E 5 HOH A 93 693 100 HOH HOH . E 5 HOH A 94 694 119 HOH HOH . E 5 HOH A 95 695 134 HOH HOH . E 5 HOH A 96 696 67 HOH HOH . E 5 HOH A 97 697 90 HOH HOH . E 5 HOH A 98 698 33 HOH HOH . E 5 HOH A 99 699 94 HOH HOH . E 5 HOH A 100 700 130 HOH HOH . E 5 HOH A 101 701 93 HOH HOH . E 5 HOH A 102 702 91 HOH HOH . E 5 HOH A 103 703 72 HOH HOH . E 5 HOH A 104 704 109 HOH HOH . E 5 HOH A 105 705 115 HOH HOH . E 5 HOH A 106 706 98 HOH HOH . E 5 HOH A 107 707 60 HOH HOH . E 5 HOH A 108 708 49 HOH HOH . E 5 HOH A 109 709 117 HOH HOH . E 5 HOH A 110 710 131 HOH HOH . E 5 HOH A 111 711 83 HOH HOH . E 5 HOH A 112 712 136 HOH HOH . E 5 HOH A 113 713 101 HOH HOH . E 5 HOH A 114 714 85 HOH HOH . E 5 HOH A 115 715 55 HOH HOH . E 5 HOH A 116 716 111 HOH HOH . E 5 HOH A 117 717 97 HOH HOH . E 5 HOH A 118 718 78 HOH HOH . E 5 HOH A 119 719 87 HOH HOH . E 5 HOH A 120 720 129 HOH HOH . E 5 HOH A 121 721 45 HOH HOH . E 5 HOH A 122 722 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -39.18 _atom_site.Cartn_y -23.61 _atom_site.Cartn_z -5.911 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.49 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #