data_6YVW
#
_model_server_result.job_id            W1WeGiI-rQxauGBnTPkbCQ 
_model_server_result.datetime_utc      '2024-11-23 17:41:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yvw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6YVW 
#
_exptl.entry_id    6YVW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.137 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(5-bromanyl-4,6-dimethyl-pyridin-2-yl)amino]-4-oxidanylidene-butanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YVW 
_cell.length_a            110.175 
_cell.length_b            110.175 
_cell.length_c            39.791 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YVW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc4 B FE FE . A FE 501 1_555 C OAD PW5 . A PW5 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc5 B FE FE . A FE 501 1_555 C NAJ PW5 . A PW5 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc6 B FE FE . A FE 501 1_555 E O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
#
_chem_comp.formula           'C11 H13 Br N2 O3' 
_chem_comp.formula_weight    301.137 
_chem_comp.id                PW5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(5-bromanyl-4,6-dimethyl-pyridin-2-yl)amino]-4-oxidanylidene-butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAD CAM PW5 doub 290 n n 
CAB CAO PW5 sing 291 n n 
CAM CAI PW5 sing 292 n n 
CAM NAK PW5 sing 293 n n 
CAI CAH PW5 sing 294 n n 
NAJ CAO PW5 doub 295 n y 
NAJ CAP PW5 sing 296 n y 
CAO CAQ PW5 sing 297 n y 
OAC CAL PW5 doub 298 n n 
CAH CAL PW5 sing 299 n n 
CAP NAK PW5 sing 300 n n 
CAP CAG PW5 doub 301 n y 
CAQ BR1 PW5 sing 302 n n 
CAQ CAN PW5 doub 303 n y 
CAL OAE PW5 sing 304 n n 
CAG CAN PW5 sing 305 n y 
CAN CAA PW5 sing 306 n n 
CAA HAA3 PW5 sing 307 n n 
CAA HAA1 PW5 sing 308 n n 
CAA HAA2 PW5 sing 309 n n 
CAB HAB1 PW5 sing 310 n n 
CAB HAB2 PW5 sing 311 n n 
CAB HAB3 PW5 sing 312 n n 
CAG HAG1 PW5 sing 313 n n 
CAH HAH1 PW5 sing 314 n n 
CAH HAH2 PW5 sing 315 n n 
CAI HAI1 PW5 sing 316 n n 
CAI HAI2 PW5 sing 317 n n 
NAK HAA PW5 sing 318 n n 
OAE H1 PW5 sing 319 n n 
#
_atom_sites.entry_id                     6YVW 
_atom_sites.fract_transf_matrix[1][1]    0.009076 
_atom_sites.fract_transf_matrix[1][2]    0.00524 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025131 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 501 501 FE FE . 
C 3 PW5 A 1 502 601 PW5 328 . 
D 4 GOL A 1 503 701 GOL GOL . 
E 5 HOH A 1 601 99 HOH HOH . 
E 5 HOH A 2 602 65 HOH HOH . 
E 5 HOH A 3 603 139 HOH HOH . 
E 5 HOH A 4 604 76 HOH HOH . 
E 5 HOH A 5 605 50 HOH HOH . 
E 5 HOH A 6 606 104 HOH HOH . 
E 5 HOH A 7 607 135 HOH HOH . 
E 5 HOH A 8 608 42 HOH HOH . 
E 5 HOH A 9 609 80 HOH HOH . 
E 5 HOH A 10 610 64 HOH HOH . 
E 5 HOH A 11 611 22 HOH HOH . 
E 5 HOH A 12 612 121 HOH HOH . 
E 5 HOH A 13 613 19 HOH HOH . 
E 5 HOH A 14 614 137 HOH HOH . 
E 5 HOH A 15 615 92 HOH HOH . 
E 5 HOH A 16 616 4 HOH HOH . 
E 5 HOH A 17 617 35 HOH HOH . 
E 5 HOH A 18 618 44 HOH HOH . 
E 5 HOH A 19 619 82 HOH HOH . 
E 5 HOH A 20 620 24 HOH HOH . 
E 5 HOH A 21 621 3 HOH HOH . 
E 5 HOH A 22 622 16 HOH HOH . 
E 5 HOH A 23 623 9 HOH HOH . 
E 5 HOH A 24 624 57 HOH HOH . 
E 5 HOH A 25 625 62 HOH HOH . 
E 5 HOH A 26 626 20 HOH HOH . 
E 5 HOH A 27 627 79 HOH HOH . 
E 5 HOH A 28 628 40 HOH HOH . 
E 5 HOH A 29 629 123 HOH HOH . 
E 5 HOH A 30 630 118 HOH HOH . 
E 5 HOH A 31 631 81 HOH HOH . 
E 5 HOH A 32 632 114 HOH HOH . 
E 5 HOH A 33 633 46 HOH HOH . 
E 5 HOH A 34 634 12 HOH HOH . 
E 5 HOH A 35 635 11 HOH HOH . 
E 5 HOH A 36 636 1 HOH HOH . 
E 5 HOH A 37 637 122 HOH HOH . 
E 5 HOH A 38 638 10 HOH HOH . 
E 5 HOH A 39 639 5 HOH HOH . 
E 5 HOH A 40 640 8 HOH HOH . 
E 5 HOH A 41 641 125 HOH HOH . 
E 5 HOH A 42 642 102 HOH HOH . 
E 5 HOH A 43 643 124 HOH HOH . 
E 5 HOH A 44 644 14 HOH HOH . 
E 5 HOH A 45 645 70 HOH HOH . 
E 5 HOH A 46 646 23 HOH HOH . 
E 5 HOH A 47 647 58 HOH HOH . 
E 5 HOH A 48 648 112 HOH HOH . 
E 5 HOH A 49 649 43 HOH HOH . 
E 5 HOH A 50 650 21 HOH HOH . 
E 5 HOH A 51 651 31 HOH HOH . 
E 5 HOH A 52 652 29 HOH HOH . 
E 5 HOH A 53 653 2 HOH HOH . 
E 5 HOH A 54 654 95 HOH HOH . 
E 5 HOH A 55 655 52 HOH HOH . 
E 5 HOH A 56 656 54 HOH HOH . 
E 5 HOH A 57 657 34 HOH HOH . 
E 5 HOH A 58 658 138 HOH HOH . 
E 5 HOH A 59 659 17 HOH HOH . 
E 5 HOH A 60 660 15 HOH HOH . 
E 5 HOH A 61 661 26 HOH HOH . 
E 5 HOH A 62 662 59 HOH HOH . 
E 5 HOH A 63 663 39 HOH HOH . 
E 5 HOH A 64 664 105 HOH HOH . 
E 5 HOH A 65 665 6 HOH HOH . 
E 5 HOH A 66 666 7 HOH HOH . 
E 5 HOH A 67 667 56 HOH HOH . 
E 5 HOH A 68 668 66 HOH HOH . 
E 5 HOH A 69 669 63 HOH HOH . 
E 5 HOH A 70 670 38 HOH HOH . 
E 5 HOH A 71 671 53 HOH HOH . 
E 5 HOH A 72 672 127 HOH HOH . 
E 5 HOH A 73 673 103 HOH HOH . 
E 5 HOH A 74 674 107 HOH HOH . 
E 5 HOH A 75 675 47 HOH HOH . 
E 5 HOH A 76 676 13 HOH HOH . 
E 5 HOH A 77 677 28 HOH HOH . 
E 5 HOH A 78 678 37 HOH HOH . 
E 5 HOH A 79 679 36 HOH HOH . 
E 5 HOH A 80 680 132 HOH HOH . 
E 5 HOH A 81 681 25 HOH HOH . 
E 5 HOH A 82 682 30 HOH HOH . 
E 5 HOH A 83 683 84 HOH HOH . 
E 5 HOH A 84 684 133 HOH HOH . 
E 5 HOH A 85 685 110 HOH HOH . 
E 5 HOH A 86 686 41 HOH HOH . 
E 5 HOH A 87 687 48 HOH HOH . 
E 5 HOH A 88 688 128 HOH HOH . 
E 5 HOH A 89 689 106 HOH HOH . 
E 5 HOH A 90 690 51 HOH HOH . 
E 5 HOH A 91 691 32 HOH HOH . 
E 5 HOH A 92 692 27 HOH HOH . 
E 5 HOH A 93 693 100 HOH HOH . 
E 5 HOH A 94 694 119 HOH HOH . 
E 5 HOH A 95 695 134 HOH HOH . 
E 5 HOH A 96 696 67 HOH HOH . 
E 5 HOH A 97 697 90 HOH HOH . 
E 5 HOH A 98 698 33 HOH HOH . 
E 5 HOH A 99 699 94 HOH HOH . 
E 5 HOH A 100 700 130 HOH HOH . 
E 5 HOH A 101 701 93 HOH HOH . 
E 5 HOH A 102 702 91 HOH HOH . 
E 5 HOH A 103 703 72 HOH HOH . 
E 5 HOH A 104 704 109 HOH HOH . 
E 5 HOH A 105 705 115 HOH HOH . 
E 5 HOH A 106 706 98 HOH HOH . 
E 5 HOH A 107 707 60 HOH HOH . 
E 5 HOH A 108 708 49 HOH HOH . 
E 5 HOH A 109 709 117 HOH HOH . 
E 5 HOH A 110 710 131 HOH HOH . 
E 5 HOH A 111 711 83 HOH HOH . 
E 5 HOH A 112 712 136 HOH HOH . 
E 5 HOH A 113 713 101 HOH HOH . 
E 5 HOH A 114 714 85 HOH HOH . 
E 5 HOH A 115 715 55 HOH HOH . 
E 5 HOH A 116 716 111 HOH HOH . 
E 5 HOH A 117 717 97 HOH HOH . 
E 5 HOH A 118 718 78 HOH HOH . 
E 5 HOH A 119 719 87 HOH HOH . 
E 5 HOH A 120 720 129 HOH HOH . 
E 5 HOH A 121 721 45 HOH HOH . 
E 5 HOH A 122 722 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA PW5 . . . C 3 -39.129 -29.574 -3.087 1 109.96 ? CAA PW5 502 A 1 
HETATM 2 C CAB PW5 . . . C 3 -41.831 -25.737 -4.976 1 89.2 ? CAB PW5 502 A 1 
HETATM 3 C CAG PW5 . . . C 3 -38.116 -27.37 -3.631 1 89.42 ? CAG PW5 502 A 1 
HETATM 4 C CAH PW5 . . . C 3 -34.805 -22.784 -4.188 1 42.18 ? CAH PW5 502 A 1 
HETATM 5 C CAI PW5 . . . C 3 -35.064 -24.17 -4.767 1 49.72 ? CAI PW5 502 A 1 
HETATM 6 C CAL PW5 . . . C 3 -33.3 -22.762 -3.86 1 35.74 ? CAL PW5 502 A 1 
HETATM 7 C CAM PW5 . . . C 3 -36.51 -24.591 -4.926 1 45.74 ? CAM PW5 502 A 1 
HETATM 8 C CAN PW5 . . . C 3 -39.219 -28.136 -3.602 1 110.03 ? CAN PW5 502 A 1 
HETATM 9 C CAO PW5 . . . C 3 -40.478 -26.286 -4.509 1 97.04 ? CAO PW5 502 A 1 
HETATM 10 C CAP PW5 . . . C 3 -38.204 -26.081 -4.115 1 77.51 ? CAP PW5 502 A 1 
HETATM 11 C CAQ PW5 . . . C 3 -40.412 -27.619 -4.037 1 122.68 ? CAQ PW5 502 A 1 
HETATM 12 N NAJ PW5 . . . C 3 -39.36 -25.506 -4.555 1 78.58 ? NAJ PW5 502 A 1 
HETATM 13 N NAK PW5 . . . C 3 -36.934 -25.434 -4.067 1 65.8 ? NAK PW5 502 A 1 
HETATM 14 O OAC PW5 . . . C 3 -32.613 -21.901 -4.41 1 33.58 ? OAC PW5 502 A 1 
HETATM 15 O OAD PW5 . . . C 3 -37.214 -24.094 -5.894 1 32.04 ? OAD PW5 502 A 1 
HETATM 16 O OAE PW5 . . . C 3 -32.837 -23.626 -3.125 1 34.66 ? OAE PW5 502 A 1 
HETATM 17 BR BR1 PW5 . . . C 3 -41.986 -28.791 -3.968 1 75.28 ? BR1 PW5 502 A 1 
HETATM 18 H HAA3 PW5 . . . C 3 -39.52 -30.176 -3.74 1 132.01 ? HAA3 PW5 502 A 1 
HETATM 19 H HAA1 PW5 . . . C 3 -39.612 -29.648 -2.249 1 132.01 ? HAA1 PW5 502 A 1 
HETATM 20 H HAA2 PW5 . . . C 3 -38.199 -29.81 -2.946 1 132.01 ? HAA2 PW5 502 A 1 
HETATM 21 H HAB1 PW5 . . . C 3 -41.688 -25.04 -5.635 1 107.11 ? HAB1 PW5 502 A 1 
HETATM 22 H HAB2 PW5 . . . C 3 -42.311 -25.371 -4.217 1 107.11 ? HAB2 PW5 502 A 1 
HETATM 23 H HAB3 PW5 . . . C 3 -42.352 -26.454 -5.372 1 107.11 ? HAB3 PW5 502 A 1 
HETATM 24 H HAG1 PW5 . . . C 3 -37.302 -27.704 -3.328 1 107.37 ? HAG1 PW5 502 A 1 
HETATM 25 H HAH1 PW5 . . . C 3 -35.332 -22.645 -3.386 1 50.68 ? HAH1 PW5 502 A 1 
HETATM 26 H HAH2 PW5 . . . C 3 -35.023 -22.096 -4.836 1 50.68 ? HAH2 PW5 502 A 1 
HETATM 27 H HAI1 PW5 . . . C 3 -34.65 -24.203 -5.644 1 59.74 ? HAI1 PW5 502 A 1 
HETATM 28 H HAI2 PW5 . . . C 3 -34.632 -24.816 -4.186 1 59.74 ? HAI2 PW5 502 A 1 
HETATM 29 H HAA PW5 . . . C 3 -36.414 -25.627 -3.41 1 79.03 ? HAA PW5 502 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#