data_6YVX # _model_server_result.job_id upeskf0TkziQRK4TGy9wvQ _model_server_result.datetime_utc '2024-11-13 20:32:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6YVX # _exptl.entry_id 6YVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 61.017 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BICARBONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YVX _cell.length_a 109.947 _cell.length_b 109.947 _cell.length_c 39.221 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.096 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C O2 2JP . A 2JP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C N1 2JP . A 2JP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc6 B MN MN . A MN 501 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'C H O3 -1' _chem_comp.formula_weight 61.017 _chem_comp.id BCT _chem_comp.mon_nstd_flag . _chem_comp.name 'BICARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BCT doub 101 n n C O2 BCT sing 102 n n C O3 BCT sing 103 n n O3 HO3 BCT sing 104 n n # _atom_sites.entry_id 6YVX _atom_sites.fract_transf_matrix[1][1] 0.009095 _atom_sites.fract_transf_matrix[1][2] 0.005251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 2JP A 1 502 601 2JP 287 . D 4 BCT A 1 503 701 BCT BCT . E 5 HOH A 1 601 1119 HOH HOH . E 5 HOH A 2 602 1125 HOH HOH . E 5 HOH A 3 603 1124 HOH HOH . E 5 HOH A 4 604 1130 HOH HOH . E 5 HOH A 5 605 1154 HOH HOH . E 5 HOH A 6 606 1008 HOH HOH . E 5 HOH A 7 607 1067 HOH HOH . E 5 HOH A 8 608 1070 HOH HOH . E 5 HOH A 9 609 1120 HOH HOH . E 5 HOH A 10 610 1143 HOH HOH . E 5 HOH A 11 611 1071 HOH HOH . E 5 HOH A 12 612 1044 HOH HOH . E 5 HOH A 13 613 1056 HOH HOH . E 5 HOH A 14 614 1031 HOH HOH . E 5 HOH A 15 615 1040 HOH HOH . E 5 HOH A 16 616 1009 HOH HOH . E 5 HOH A 17 617 1146 HOH HOH . E 5 HOH A 18 618 1153 HOH HOH . E 5 HOH A 19 619 1039 HOH HOH . E 5 HOH A 20 620 1029 HOH HOH . E 5 HOH A 21 621 1018 HOH HOH . E 5 HOH A 22 622 1053 HOH HOH . E 5 HOH A 23 623 1001 HOH HOH . E 5 HOH A 24 624 1047 HOH HOH . E 5 HOH A 25 625 1013 HOH HOH . E 5 HOH A 26 626 1066 HOH HOH . E 5 HOH A 27 627 1150 HOH HOH . E 5 HOH A 28 628 1081 HOH HOH . E 5 HOH A 29 629 1100 HOH HOH . E 5 HOH A 30 630 1002 HOH HOH . E 5 HOH A 31 631 1006 HOH HOH . E 5 HOH A 32 632 1015 HOH HOH . E 5 HOH A 33 633 1110 HOH HOH . E 5 HOH A 34 634 1097 HOH HOH . E 5 HOH A 35 635 1011 HOH HOH . E 5 HOH A 36 636 1060 HOH HOH . E 5 HOH A 37 637 1068 HOH HOH . E 5 HOH A 38 638 1099 HOH HOH . E 5 HOH A 39 639 1014 HOH HOH . E 5 HOH A 40 640 1045 HOH HOH . E 5 HOH A 41 641 1065 HOH HOH . E 5 HOH A 42 642 1032 HOH HOH . E 5 HOH A 43 643 1084 HOH HOH . E 5 HOH A 44 644 1030 HOH HOH . E 5 HOH A 45 645 1023 HOH HOH . E 5 HOH A 46 646 1003 HOH HOH . E 5 HOH A 47 647 1048 HOH HOH . E 5 HOH A 48 648 1105 HOH HOH . E 5 HOH A 49 649 1026 HOH HOH . E 5 HOH A 50 650 1028 HOH HOH . E 5 HOH A 51 651 1116 HOH HOH . E 5 HOH A 52 652 1074 HOH HOH . E 5 HOH A 53 653 1144 HOH HOH . E 5 HOH A 54 654 1126 HOH HOH . E 5 HOH A 55 655 1022 HOH HOH . E 5 HOH A 56 656 1010 HOH HOH . E 5 HOH A 57 657 1094 HOH HOH . E 5 HOH A 58 658 1055 HOH HOH . E 5 HOH A 59 659 1069 HOH HOH . E 5 HOH A 60 660 1012 HOH HOH . E 5 HOH A 61 661 1043 HOH HOH . E 5 HOH A 62 662 1049 HOH HOH . E 5 HOH A 63 663 1027 HOH HOH . E 5 HOH A 64 664 1117 HOH HOH . E 5 HOH A 65 665 1034 HOH HOH . E 5 HOH A 66 666 1076 HOH HOH . E 5 HOH A 67 667 1041 HOH HOH . E 5 HOH A 68 668 1095 HOH HOH . E 5 HOH A 69 669 1020 HOH HOH . E 5 HOH A 70 670 1140 HOH HOH . E 5 HOH A 71 671 1016 HOH HOH . E 5 HOH A 72 672 1054 HOH HOH . E 5 HOH A 73 673 1051 HOH HOH . E 5 HOH A 74 674 1135 HOH HOH . E 5 HOH A 75 675 1038 HOH HOH . E 5 HOH A 76 676 1004 HOH HOH . E 5 HOH A 77 677 1079 HOH HOH . E 5 HOH A 78 678 1149 HOH HOH . E 5 HOH A 79 679 1129 HOH HOH . E 5 HOH A 80 680 1085 HOH HOH . E 5 HOH A 81 681 1072 HOH HOH . E 5 HOH A 82 682 1123 HOH HOH . E 5 HOH A 83 683 1024 HOH HOH . E 5 HOH A 84 684 1037 HOH HOH . E 5 HOH A 85 685 1036 HOH HOH . E 5 HOH A 86 686 1035 HOH HOH . E 5 HOH A 87 687 1141 HOH HOH . E 5 HOH A 88 688 1083 HOH HOH . E 5 HOH A 89 689 1019 HOH HOH . E 5 HOH A 90 690 1138 HOH HOH . E 5 HOH A 91 691 1062 HOH HOH . E 5 HOH A 92 692 1136 HOH HOH . E 5 HOH A 93 693 1152 HOH HOH . E 5 HOH A 94 694 1073 HOH HOH . E 5 HOH A 95 695 1033 HOH HOH . E 5 HOH A 96 696 1025 HOH HOH . E 5 HOH A 97 697 1052 HOH HOH . E 5 HOH A 98 698 1017 HOH HOH . E 5 HOH A 99 699 1080 HOH HOH . E 5 HOH A 100 700 1021 HOH HOH . E 5 HOH A 101 701 1104 HOH HOH . E 5 HOH A 102 702 1007 HOH HOH . E 5 HOH A 103 703 1115 HOH HOH . E 5 HOH A 104 704 1050 HOH HOH . E 5 HOH A 105 705 1111 HOH HOH . E 5 HOH A 106 706 1042 HOH HOH . E 5 HOH A 107 707 1088 HOH HOH . E 5 HOH A 108 708 1108 HOH HOH . E 5 HOH A 109 709 1142 HOH HOH . E 5 HOH A 110 710 1137 HOH HOH . E 5 HOH A 111 711 1093 HOH HOH . E 5 HOH A 112 712 1075 HOH HOH . E 5 HOH A 113 713 1101 HOH HOH . E 5 HOH A 114 714 1132 HOH HOH . E 5 HOH A 115 715 1058 HOH HOH . E 5 HOH A 116 716 1151 HOH HOH . E 5 HOH A 117 717 1046 HOH HOH . E 5 HOH A 118 718 1145 HOH HOH . E 5 HOH A 119 719 1112 HOH HOH . E 5 HOH A 120 720 1078 HOH HOH . E 5 HOH A 121 721 1121 HOH HOH . E 5 HOH A 122 722 1059 HOH HOH . E 5 HOH A 123 723 1107 HOH HOH . E 5 HOH A 124 724 1134 HOH HOH . E 5 HOH A 125 725 1133 HOH HOH . E 5 HOH A 126 726 1106 HOH HOH . E 5 HOH A 127 727 1113 HOH HOH . E 5 HOH A 128 728 1090 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BCT . . . D 4 42.929 22.736 -13.492 1 41.59 ? C BCT 503 A 1 HETATM 2 O O1 BCT . . . D 4 43.11 21.672 -13.951 1 42.98 ? O1 BCT 503 A 1 HETATM 3 O O2 BCT . . . D 4 41.954 23.481 -13.522 1 43.04 ? O2 BCT 503 A 1 HETATM 4 O O3 BCT . . . D 4 44.129 23.304 -12.883 1 57.43 ? O3 BCT 503 A 1 HETATM 5 H HO3 BCT . . . D 4 44.761 22.736 -12.87 1 68.91 ? HO3 BCT 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #