data_6YVZ
#
_model_server_result.job_id            rkz1oKoholZe5yWoJBrX3A 
_model_server_result.datetime_utc      '2024-11-12 19:36:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yvz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6YVZ 
#
_exptl.entry_id    6YVZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              61.017 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BICARBONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YVZ 
_cell.length_a            109.88 
_cell.length_b            109.88 
_cell.length_c            39.08 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YVZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 B MN MN . A MN 501 1_555 C O18 PW8 . A PW8 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc5 B MN MN . A MN 501 1_555 C N17 PW8 . A PW8 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc6 B MN MN . A MN 501 1_555 E O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
#
_chem_comp.formula           'C H O3 -1' 
_chem_comp.formula_weight    61.017 
_chem_comp.id                BCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BICARBONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BCT doub 70 n n 
C O2 BCT sing 71 n n 
C O3 BCT sing 72 n n 
O3 HO3 BCT sing 73 n n 
#
_atom_sites.entry_id                     6YVZ 
_atom_sites.fract_transf_matrix[1][1]    0.009101 
_atom_sites.fract_transf_matrix[1][2]    0.005254 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 501 501 MN MN . 
C 3 PW8 A 1 502 601 PW8 367 . 
D 4 BCT A 1 503 701 BCT BCT . 
E 5 HOH A 1 601 42 HOH HOH . 
E 5 HOH A 2 602 69 HOH HOH . 
E 5 HOH A 3 603 52 HOH HOH . 
E 5 HOH A 4 604 39 HOH HOH . 
E 5 HOH A 5 605 49 HOH HOH . 
E 5 HOH A 6 606 74 HOH HOH . 
E 5 HOH A 7 607 34 HOH HOH . 
E 5 HOH A 8 608 32 HOH HOH . 
E 5 HOH A 9 609 84 HOH HOH . 
E 5 HOH A 10 610 38 HOH HOH . 
E 5 HOH A 11 611 15 HOH HOH . 
E 5 HOH A 12 612 70 HOH HOH . 
E 5 HOH A 13 613 13 HOH HOH . 
E 5 HOH A 14 614 37 HOH HOH . 
E 5 HOH A 15 615 35 HOH HOH . 
E 5 HOH A 16 616 31 HOH HOH . 
E 5 HOH A 17 617 1 HOH HOH . 
E 5 HOH A 18 618 30 HOH HOH . 
E 5 HOH A 19 619 9 HOH HOH . 
E 5 HOH A 20 620 12 HOH HOH . 
E 5 HOH A 21 621 18 HOH HOH . 
E 5 HOH A 22 622 20 HOH HOH . 
E 5 HOH A 23 623 23 HOH HOH . 
E 5 HOH A 24 624 75 HOH HOH . 
E 5 HOH A 25 625 79 HOH HOH . 
E 5 HOH A 26 626 22 HOH HOH . 
E 5 HOH A 27 627 48 HOH HOH . 
E 5 HOH A 28 628 55 HOH HOH . 
E 5 HOH A 29 629 45 HOH HOH . 
E 5 HOH A 30 630 82 HOH HOH . 
E 5 HOH A 31 631 78 HOH HOH . 
E 5 HOH A 32 632 27 HOH HOH . 
E 5 HOH A 33 633 29 HOH HOH . 
E 5 HOH A 34 634 11 HOH HOH . 
E 5 HOH A 35 635 21 HOH HOH . 
E 5 HOH A 36 636 41 HOH HOH . 
E 5 HOH A 37 637 3 HOH HOH . 
E 5 HOH A 38 638 10 HOH HOH . 
E 5 HOH A 39 639 50 HOH HOH . 
E 5 HOH A 40 640 57 HOH HOH . 
E 5 HOH A 41 641 28 HOH HOH . 
E 5 HOH A 42 642 86 HOH HOH . 
E 5 HOH A 43 643 2 HOH HOH . 
E 5 HOH A 44 644 24 HOH HOH . 
E 5 HOH A 45 645 64 HOH HOH . 
E 5 HOH A 46 646 94 HOH HOH . 
E 5 HOH A 47 647 14 HOH HOH . 
E 5 HOH A 48 648 46 HOH HOH . 
E 5 HOH A 49 649 4 HOH HOH . 
E 5 HOH A 50 650 16 HOH HOH . 
E 5 HOH A 51 651 51 HOH HOH . 
E 5 HOH A 52 652 62 HOH HOH . 
E 5 HOH A 53 653 33 HOH HOH . 
E 5 HOH A 54 654 5 HOH HOH . 
E 5 HOH A 55 655 8 HOH HOH . 
E 5 HOH A 56 656 19 HOH HOH . 
E 5 HOH A 57 657 36 HOH HOH . 
E 5 HOH A 58 658 72 HOH HOH . 
E 5 HOH A 59 659 6 HOH HOH . 
E 5 HOH A 60 660 65 HOH HOH . 
E 5 HOH A 61 661 73 HOH HOH . 
E 5 HOH A 62 662 87 HOH HOH . 
E 5 HOH A 63 663 25 HOH HOH . 
E 5 HOH A 64 664 7 HOH HOH . 
E 5 HOH A 65 665 26 HOH HOH . 
E 5 HOH A 66 666 58 HOH HOH . 
E 5 HOH A 67 667 53 HOH HOH . 
E 5 HOH A 68 668 91 HOH HOH . 
E 5 HOH A 69 669 43 HOH HOH . 
E 5 HOH A 70 670 63 HOH HOH . 
E 5 HOH A 71 671 17 HOH HOH . 
E 5 HOH A 72 672 85 HOH HOH . 
E 5 HOH A 73 673 93 HOH HOH . 
E 5 HOH A 74 674 47 HOH HOH . 
E 5 HOH A 75 675 59 HOH HOH . 
E 5 HOH A 76 676 67 HOH HOH . 
E 5 HOH A 77 677 68 HOH HOH . 
E 5 HOH A 78 678 60 HOH HOH . 
E 5 HOH A 79 679 54 HOH HOH . 
E 5 HOH A 80 680 90 HOH HOH . 
E 5 HOH A 81 681 83 HOH HOH . 
E 5 HOH A 82 682 88 HOH HOH . 
E 5 HOH A 83 683 80 HOH HOH . 
E 5 HOH A 84 684 40 HOH HOH . 
E 5 HOH A 85 685 92 HOH HOH . 
E 5 HOH A 86 686 71 HOH HOH . 
E 5 HOH A 87 687 77 HOH HOH . 
E 5 HOH A 88 688 76 HOH HOH . 
E 5 HOH A 89 689 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BCT . . . D 4 42.995 22.768 -13.653 1 51.91 ? C BCT 503 A 1 
HETATM 2 O O1 BCT . . . D 4 41.911 23.309 -13.698 1 48.78 ? O1 BCT 503 A 1 
HETATM 3 O O2 BCT . . . D 4 44.135 23.1 -13.211 1 61.33 ? O2 BCT 503 A 1 
HETATM 4 O O3 BCT . . . D 4 42.948 21.5 -14.217 1 50.17 ? O3 BCT 503 A 1 
HETATM 5 H HO3 BCT . . . D 4 43.532 20.99 -13.868 1 60.28 ? HO3 BCT 503 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#