data_6YW0
#
_model_server_result.job_id            z_PIdGnLrlVjWFqPEnJkug 
_model_server_result.datetime_utc      '2024-11-27 09:25:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yw0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    6YW0 
#
_exptl.entry_id    6YW0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              61.017 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BICARBONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YW0 
_cell.length_a            110.927 
_cell.length_b            110.927 
_cell.length_c            39.66 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YW0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A C LEU 17 A LEU 191 1_555 A N MLY 18 A MLY 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MLY 18 A MLY 192 1_555 A N LEU 19 A LEU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C ASN 29 A ASN 203 1_555 A N MLY 30 A MLY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MLY 30 A MLY 204 1_555 A N HIS 31 A HIS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLY 41 A GLY 215 1_555 A N MLY 42 A MLY 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MLY 42 A MLY 216 1_555 A N GLU 43 A GLU 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 A C GLY 59 A GLY 233 1_555 A N MLY 60 A MLY 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C MLY 60 A MLY 234 1_555 A N PHE 61 A PHE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 A C GLN 69 A GLN 243 1_555 A N MLY 70 A MLY 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MLY 70 A MLY 244 1_555 A N SER 71 A SER 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
covale ? covale11 A C SER 74 A SER 248 1_555 A N MLY 75 A MLY 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 A C MLY 75 A MLY 249 1_555 A N ASP 76 A ASP 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C ASP 80 A ASP 254 1_555 A N MLY 81 A MLY 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C MLY 81 A MLY 255 1_555 A N ILE 82 A ILE 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 A C GLY 87 A GLY 261 1_555 A N MLY 88 A MLY 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C MLY 88 A MLY 262 1_555 A N GLU 89 A GLU 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale17 A C GLY 111 A GLY 285 1_555 A N MLY 112 A MLY 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 A C MLY 112 A MLY 286 1_555 A N LEU 113 A LEU 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 A C TYR 116 A TYR 290 1_555 A N MLY 117 A MLY 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MLY 117 A MLY 291 1_555 A N ILE 118 A ILE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale21 A C THR 122 A THR 296 1_555 A N MLY 123 A MLY 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale22 A C MLY 123 A MLY 297 1_555 A N ALA 124 A ALA 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale23 A C ASN 157 A ASN 331 1_555 A N MLY 158 A MLY 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 A C MLY 158 A MLY 332 1_555 A N ASP 159 A ASP 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale25 A C ALA 162 A ALA 336 1_555 A N MLY 163 A MLY 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale26 A C MLY 163 A MLY 337 1_555 A N VAL 164 A VAL 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale27 A C GLY 175 A GLY 349 1_555 A N MLY 176 A MLY 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale28 A C MLY 176 A MLY 350 1_555 A N ALA 177 A ALA 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale29 A C PRO 184 A PRO 358 1_555 A N MLY 185 A MLY 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale30 A C MLY 185 A MLY 359 1_555 A N PHE 186 A PHE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale31 A C ALA 225 A ALA 399 1_555 A N MLY 226 A MLY 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale32 A C MLY 226 A MLY 400 1_555 A N VAL 227 A VAL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale33 A C VAL 227 A VAL 401 1_555 A N MLY 228 A MLY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale34 A C MLY 228 A MLY 402 1_555 A N TYR 229 A TYR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc4 B FE FE . A FE 501 1_555 C O2 2JP . A 2JP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc5 B FE FE . A FE 501 1_555 C N1 2JP . A 2JP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc6 B FE FE . A FE 501 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
#
_chem_comp.formula           'C H O3 -1' 
_chem_comp.formula_weight    61.017 
_chem_comp.id                BCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BICARBONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 BCT doub 101 n n 
C O2 BCT sing 102 n n 
C O3 BCT sing 103 n n 
O3 HO3 BCT sing 104 n n 
#
_atom_sites.entry_id                     6YW0 
_atom_sites.fract_transf_matrix[1][1]    0.009015 
_atom_sites.fract_transf_matrix[1][2]    0.005205 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025215 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 501 501 FE FE . 
C 3 2JP A 1 502 601 2JP 287 . 
D 4 BCT A 1 503 701 BCT BCT . 
E 5 HOH A 1 601 80 HOH HOH . 
E 5 HOH A 2 602 28 HOH HOH . 
E 5 HOH A 3 603 16 HOH HOH . 
E 5 HOH A 4 604 6 HOH HOH . 
E 5 HOH A 5 605 64 HOH HOH . 
E 5 HOH A 6 606 37 HOH HOH . 
E 5 HOH A 7 607 58 HOH HOH . 
E 5 HOH A 8 608 70 HOH HOH . 
E 5 HOH A 9 609 17 HOH HOH . 
E 5 HOH A 10 610 67 HOH HOH . 
E 5 HOH A 11 611 68 HOH HOH . 
E 5 HOH A 12 612 79 HOH HOH . 
E 5 HOH A 13 613 2 HOH HOH . 
E 5 HOH A 14 614 29 HOH HOH . 
E 5 HOH A 15 615 36 HOH HOH . 
E 5 HOH A 16 616 19 HOH HOH . 
E 5 HOH A 17 617 25 HOH HOH . 
E 5 HOH A 18 618 3 HOH HOH . 
E 5 HOH A 19 619 9 HOH HOH . 
E 5 HOH A 20 620 75 HOH HOH . 
E 5 HOH A 21 621 33 HOH HOH . 
E 5 HOH A 22 622 47 HOH HOH . 
E 5 HOH A 23 623 11 HOH HOH . 
E 5 HOH A 24 624 41 HOH HOH . 
E 5 HOH A 25 625 48 HOH HOH . 
E 5 HOH A 26 626 59 HOH HOH . 
E 5 HOH A 27 627 5 HOH HOH . 
E 5 HOH A 28 628 63 HOH HOH . 
E 5 HOH A 29 629 26 HOH HOH . 
E 5 HOH A 30 630 13 HOH HOH . 
E 5 HOH A 31 631 10 HOH HOH . 
E 5 HOH A 32 632 15 HOH HOH . 
E 5 HOH A 33 633 1 HOH HOH . 
E 5 HOH A 34 634 12 HOH HOH . 
E 5 HOH A 35 635 61 HOH HOH . 
E 5 HOH A 36 636 7 HOH HOH . 
E 5 HOH A 37 637 34 HOH HOH . 
E 5 HOH A 38 638 73 HOH HOH . 
E 5 HOH A 39 639 20 HOH HOH . 
E 5 HOH A 40 640 8 HOH HOH . 
E 5 HOH A 41 641 38 HOH HOH . 
E 5 HOH A 42 642 44 HOH HOH . 
E 5 HOH A 43 643 60 HOH HOH . 
E 5 HOH A 44 644 14 HOH HOH . 
E 5 HOH A 45 645 18 HOH HOH . 
E 5 HOH A 46 646 31 HOH HOH . 
E 5 HOH A 47 647 52 HOH HOH . 
E 5 HOH A 48 648 4 HOH HOH . 
E 5 HOH A 49 649 27 HOH HOH . 
E 5 HOH A 50 650 71 HOH HOH . 
E 5 HOH A 51 651 72 HOH HOH . 
E 5 HOH A 52 652 24 HOH HOH . 
E 5 HOH A 53 653 51 HOH HOH . 
E 5 HOH A 54 654 42 HOH HOH . 
E 5 HOH A 55 655 76 HOH HOH . 
E 5 HOH A 56 656 77 HOH HOH . 
E 5 HOH A 57 657 50 HOH HOH . 
E 5 HOH A 58 658 74 HOH HOH . 
E 5 HOH A 59 659 54 HOH HOH . 
E 5 HOH A 60 660 62 HOH HOH . 
E 5 HOH A 61 661 49 HOH HOH . 
E 5 HOH A 62 662 78 HOH HOH . 
E 5 HOH A 63 663 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BCT . . . D 4 1.91 48.911 -16.173 1 95.17 ? C BCT 503 A 1 
HETATM 2 O O1 BCT . . . D 4 2.776 48.154 -16.612 1 93.99 ? O1 BCT 503 A 1 
HETATM 3 O O2 BCT . . . D 4 1.893 50.092 -15.865 1 95.96 ? O2 BCT 503 A 1 
HETATM 4 O O3 BCT . . . D 4 0.606 48.321 -16.059 1 95.27 ? O3 BCT 503 A 1 
HETATM 5 H HO3 BCT . . . D 4 0.088 48.816 -15.602 1 114.38 ? HO3 BCT 503 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           428 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#