data_6YW1
#
_model_server_result.job_id            wq85b_6TxZzOpj-NNx6sbA 
_model_server_result.datetime_utc      '2024-11-09 01:42:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yw1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6YW1 
#
_exptl.entry_id    6YW1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6YW1 
_cell.length_a            46.531 
_cell.length_b            46.531 
_cell.length_c            202.345 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YW1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C09 48V 1 B 48V 0 1_555 B N DTY 2 B DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale2 B N01 48V 1 B 48V 0 1_555 B C THR 14 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 B C DTY 2 B DTY 1 1_555 B N VAL 3 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc4 C MN MN . A MN 501 1_555 D O1 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc5 C MN MN . A MN 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 C MN MN . A MN 501 1_555 F O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YW1 
_atom_sites.fract_transf_matrix[1][1]    0.021491 
_atom_sites.fract_transf_matrix[1][2]    0.012408 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024816 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004942 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 501 501 MN MN . 
D 4 AKG A 1 502 601 AKG AKG . 
E 5 BCT A 1 503 701 BCT BCT . 
F 6 HOH A 1 601 215 HOH HOH . 
F 6 HOH A 2 602 217 HOH HOH . 
F 6 HOH A 3 603 108 HOH HOH . 
F 6 HOH A 4 604 220 HOH HOH . 
F 6 HOH A 5 605 100 HOH HOH . 
F 6 HOH A 6 606 185 HOH HOH . 
F 6 HOH A 7 607 208 HOH HOH . 
F 6 HOH A 8 608 91 HOH HOH . 
F 6 HOH A 9 609 165 HOH HOH . 
F 6 HOH A 10 610 200 HOH HOH . 
F 6 HOH A 11 611 38 HOH HOH . 
F 6 HOH A 12 612 70 HOH HOH . 
F 6 HOH A 13 613 222 HOH HOH . 
F 6 HOH A 14 614 230 HOH HOH . 
F 6 HOH A 15 615 94 HOH HOH . 
F 6 HOH A 16 616 141 HOH HOH . 
F 6 HOH A 17 617 164 HOH HOH . 
F 6 HOH A 18 618 144 HOH HOH . 
F 6 HOH A 19 619 50 HOH HOH . 
F 6 HOH A 20 620 190 HOH HOH . 
F 6 HOH A 21 621 8 HOH HOH . 
F 6 HOH A 22 622 123 HOH HOH . 
F 6 HOH A 23 623 67 HOH HOH . 
F 6 HOH A 24 624 10 HOH HOH . 
F 6 HOH A 25 625 23 HOH HOH . 
F 6 HOH A 26 626 22 HOH HOH . 
F 6 HOH A 27 627 51 HOH HOH . 
F 6 HOH A 28 628 5 HOH HOH . 
F 6 HOH A 29 629 95 HOH HOH . 
F 6 HOH A 30 630 58 HOH HOH . 
F 6 HOH A 31 631 24 HOH HOH . 
F 6 HOH A 32 632 89 HOH HOH . 
F 6 HOH A 33 633 128 HOH HOH . 
F 6 HOH A 34 634 26 HOH HOH . 
F 6 HOH A 35 635 149 HOH HOH . 
F 6 HOH A 36 636 34 HOH HOH . 
F 6 HOH A 37 637 11 HOH HOH . 
F 6 HOH A 38 638 43 HOH HOH . 
F 6 HOH A 39 639 152 HOH HOH . 
F 6 HOH A 40 640 28 HOH HOH . 
F 6 HOH A 41 641 121 HOH HOH . 
F 6 HOH A 42 642 223 HOH HOH . 
F 6 HOH A 43 643 135 HOH HOH . 
F 6 HOH A 44 644 196 HOH HOH . 
F 6 HOH A 45 645 25 HOH HOH . 
F 6 HOH A 46 646 99 HOH HOH . 
F 6 HOH A 47 647 156 HOH HOH . 
F 6 HOH A 48 648 21 HOH HOH . 
F 6 HOH A 49 649 148 HOH HOH . 
F 6 HOH A 50 650 189 HOH HOH . 
F 6 HOH A 51 651 76 HOH HOH . 
F 6 HOH A 52 652 145 HOH HOH . 
F 6 HOH A 53 653 33 HOH HOH . 
F 6 HOH A 54 654 35 HOH HOH . 
F 6 HOH A 55 655 2 HOH HOH . 
F 6 HOH A 56 656 59 HOH HOH . 
F 6 HOH A 57 657 55 HOH HOH . 
F 6 HOH A 58 658 4 HOH HOH . 
F 6 HOH A 59 659 6 HOH HOH . 
F 6 HOH A 60 660 117 HOH HOH . 
F 6 HOH A 61 661 150 HOH HOH . 
F 6 HOH A 62 662 29 HOH HOH . 
F 6 HOH A 63 663 63 HOH HOH . 
F 6 HOH A 64 664 126 HOH HOH . 
F 6 HOH A 65 665 181 HOH HOH . 
F 6 HOH A 66 666 186 HOH HOH . 
F 6 HOH A 67 667 83 HOH HOH . 
F 6 HOH A 68 668 137 HOH HOH . 
F 6 HOH A 69 669 111 HOH HOH . 
F 6 HOH A 70 670 146 HOH HOH . 
F 6 HOH A 71 671 47 HOH HOH . 
F 6 HOH A 72 672 86 HOH HOH . 
F 6 HOH A 73 673 131 HOH HOH . 
F 6 HOH A 74 674 69 HOH HOH . 
F 6 HOH A 75 675 12 HOH HOH . 
F 6 HOH A 76 676 124 HOH HOH . 
F 6 HOH A 77 677 140 HOH HOH . 
F 6 HOH A 78 678 147 HOH HOH . 
F 6 HOH A 79 679 7 HOH HOH . 
F 6 HOH A 80 680 242 HOH HOH . 
F 6 HOH A 81 681 41 HOH HOH . 
F 6 HOH A 82 682 88 HOH HOH . 
F 6 HOH A 83 683 214 HOH HOH . 
F 6 HOH A 84 684 130 HOH HOH . 
F 6 HOH A 85 685 20 HOH HOH . 
F 6 HOH A 86 686 73 HOH HOH . 
F 6 HOH A 87 687 104 HOH HOH . 
F 6 HOH A 88 688 233 HOH HOH . 
F 6 HOH A 89 689 1 HOH HOH . 
F 6 HOH A 90 690 81 HOH HOH . 
F 6 HOH A 91 691 103 HOH HOH . 
F 6 HOH A 92 692 93 HOH HOH . 
F 6 HOH A 93 693 138 HOH HOH . 
F 6 HOH A 94 694 71 HOH HOH . 
F 6 HOH A 95 695 143 HOH HOH . 
F 6 HOH A 96 696 17 HOH HOH . 
F 6 HOH A 97 697 3 HOH HOH . 
F 6 HOH A 98 698 169 HOH HOH . 
F 6 HOH A 99 699 49 HOH HOH . 
F 6 HOH A 100 700 60 HOH HOH . 
F 6 HOH A 101 701 9 HOH HOH . 
F 6 HOH A 102 702 109 HOH HOH . 
F 6 HOH A 103 703 113 HOH HOH . 
F 6 HOH A 104 704 75 HOH HOH . 
F 6 HOH A 105 705 129 HOH HOH . 
F 6 HOH A 106 706 65 HOH HOH . 
F 6 HOH A 107 707 132 HOH HOH . 
F 6 HOH A 108 708 134 HOH HOH . 
F 6 HOH A 109 709 30 HOH HOH . 
F 6 HOH A 110 710 57 HOH HOH . 
F 6 HOH A 111 711 82 HOH HOH . 
F 6 HOH A 112 712 13 HOH HOH . 
F 6 HOH A 113 713 120 HOH HOH . 
F 6 HOH A 114 714 36 HOH HOH . 
F 6 HOH A 115 715 122 HOH HOH . 
F 6 HOH A 116 716 118 HOH HOH . 
F 6 HOH A 117 717 54 HOH HOH . 
F 6 HOH A 118 718 46 HOH HOH . 
F 6 HOH A 119 719 61 HOH HOH . 
F 6 HOH A 120 720 19 HOH HOH . 
F 6 HOH A 121 721 229 HOH HOH . 
F 6 HOH A 122 722 163 HOH HOH . 
F 6 HOH A 123 723 80 HOH HOH . 
F 6 HOH A 124 724 244 HOH HOH . 
F 6 HOH A 125 725 85 HOH HOH . 
F 6 HOH A 126 726 102 HOH HOH . 
F 6 HOH A 127 727 27 HOH HOH . 
F 6 HOH A 128 728 32 HOH HOH . 
F 6 HOH A 129 729 78 HOH HOH . 
F 6 HOH A 130 730 240 HOH HOH . 
F 6 HOH A 131 731 201 HOH HOH . 
F 6 HOH A 132 732 114 HOH HOH . 
F 6 HOH A 133 733 184 HOH HOH . 
F 6 HOH A 134 734 106 HOH HOH . 
F 6 HOH A 135 735 15 HOH HOH . 
F 6 HOH A 136 736 45 HOH HOH . 
F 6 HOH A 137 737 101 HOH HOH . 
F 6 HOH A 138 738 44 HOH HOH . 
F 6 HOH A 139 739 53 HOH HOH . 
F 6 HOH A 140 740 31 HOH HOH . 
F 6 HOH A 141 741 216 HOH HOH . 
F 6 HOH A 142 742 234 HOH HOH . 
F 6 HOH A 143 743 238 HOH HOH . 
F 6 HOH A 144 744 175 HOH HOH . 
F 6 HOH A 145 745 77 HOH HOH . 
F 6 HOH A 146 746 16 HOH HOH . 
F 6 HOH A 147 747 115 HOH HOH . 
F 6 HOH A 148 748 40 HOH HOH . 
F 6 HOH A 149 749 228 HOH HOH . 
F 6 HOH A 150 750 64 HOH HOH . 
F 6 HOH A 151 751 241 HOH HOH . 
F 6 HOH A 152 752 52 HOH HOH . 
F 6 HOH A 153 753 237 HOH HOH . 
F 6 HOH A 154 754 127 HOH HOH . 
F 6 HOH A 155 755 191 HOH HOH . 
F 6 HOH A 156 756 176 HOH HOH . 
F 6 HOH A 157 757 173 HOH HOH . 
F 6 HOH A 158 758 112 HOH HOH . 
F 6 HOH A 159 759 199 HOH HOH . 
F 6 HOH A 160 760 84 HOH HOH . 
F 6 HOH A 161 761 172 HOH HOH . 
F 6 HOH A 162 762 153 HOH HOH . 
F 6 HOH A 163 763 110 HOH HOH . 
F 6 HOH A 164 764 179 HOH HOH . 
F 6 HOH A 165 765 79 HOH HOH . 
F 6 HOH A 166 766 204 HOH HOH . 
F 6 HOH A 167 767 182 HOH HOH . 
F 6 HOH A 168 768 198 HOH HOH . 
F 6 HOH A 169 769 239 HOH HOH . 
F 6 HOH A 170 770 162 HOH HOH . 
F 6 HOH A 171 771 246 HOH HOH . 
F 6 HOH A 172 772 194 HOH HOH . 
F 6 HOH A 173 773 178 HOH HOH . 
F 6 HOH A 174 774 66 HOH HOH . 
F 6 HOH A 175 775 133 HOH HOH . 
F 6 HOH A 176 776 168 HOH HOH . 
F 6 HOH A 177 777 202 HOH HOH . 
F 6 HOH A 178 778 243 HOH HOH . 
F 6 HOH A 179 779 183 HOH HOH . 
F 6 HOH A 180 780 48 HOH HOH . 
F 6 HOH A 181 781 195 HOH HOH . 
F 6 HOH A 182 782 154 HOH HOH . 
F 6 HOH A 183 783 180 HOH HOH . 
F 6 HOH A 184 784 139 HOH HOH . 
F 6 HOH A 185 785 72 HOH HOH . 
F 6 HOH A 186 786 39 HOH HOH . 
F 6 HOH A 187 787 210 HOH HOH . 
F 6 HOH A 188 788 225 HOH HOH . 
F 6 HOH A 189 789 56 HOH HOH . 
F 6 HOH A 190 790 170 HOH HOH . 
F 6 HOH A 191 791 236 HOH HOH . 
F 6 HOH A 192 792 171 HOH HOH . 
F 6 HOH A 193 793 62 HOH HOH . 
F 6 HOH A 194 794 224 HOH HOH . 
F 6 HOH A 195 795 245 HOH HOH . 
F 6 HOH A 196 796 177 HOH HOH . 
F 6 HOH A 197 797 116 HOH HOH . 
F 6 HOH A 198 798 119 HOH HOH . 
F 6 HOH A 199 799 188 HOH HOH . 
F 6 HOH A 200 800 159 HOH HOH . 
F 6 HOH A 201 801 211 HOH HOH . 
F 6 HOH A 202 802 167 HOH HOH . 
F 6 HOH A 203 803 90 HOH HOH . 
F 6 HOH A 204 804 205 HOH HOH . 
F 6 HOH A 205 805 227 HOH HOH . 
F 6 HOH A 206 806 125 HOH HOH . 
F 6 HOH A 207 807 158 HOH HOH . 
F 6 HOH A 208 808 87 HOH HOH . 
F 6 HOH A 209 809 142 HOH HOH . 
F 6 HOH A 210 810 212 HOH HOH . 
F 6 HOH A 211 811 209 HOH HOH . 
F 6 HOH A 212 812 226 HOH HOH . 
F 6 HOH A 213 813 231 HOH HOH . 
F 6 HOH A 214 814 206 HOH HOH . 
F 6 HOH A 215 815 105 HOH HOH . 
F 6 HOH A 216 816 161 HOH HOH . 
F 6 HOH A 217 817 213 HOH HOH . 
F 6 HOH A 218 818 203 HOH HOH . 
F 6 HOH A 219 819 219 HOH HOH . 
F 6 HOH A 220 820 166 HOH HOH . 
F 6 HOH A 221 821 193 HOH HOH . 
F 6 HOH A 222 822 235 HOH HOH . 
F 6 HOH A 223 823 160 HOH HOH . 
F 6 HOH A 224 824 197 HOH HOH . 
F 6 HOH A 225 825 96 HOH HOH . 
F 6 HOH A 226 826 218 HOH HOH . 
F 6 HOH A 227 827 232 HOH HOH . 
F 6 HOH A 228 828 207 HOH HOH . 
G 6 HOH B 1 101 174 HOH HOH . 
G 6 HOH B 2 102 151 HOH HOH . 
G 6 HOH B 3 103 192 HOH HOH . 
G 6 HOH B 4 104 14 HOH HOH . 
G 6 HOH B 5 105 74 HOH HOH . 
G 6 HOH B 6 106 68 HOH HOH . 
G 6 HOH B 7 107 92 HOH HOH . 
G 6 HOH B 8 108 42 HOH HOH . 
G 6 HOH B 9 109 136 HOH HOH . 
G 6 HOH B 10 110 97 HOH HOH . 
G 6 HOH B 11 111 18 HOH HOH . 
G 6 HOH B 12 112 107 HOH HOH . 
G 6 HOH B 13 113 157 HOH HOH . 
G 6 HOH B 14 114 98 HOH HOH . 
G 6 HOH B 15 115 37 HOH HOH . 
G 6 HOH B 16 116 155 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -10.845 
_atom_site.Cartn_y               17.626 
_atom_site.Cartn_z               -8.51 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#