data_6YW1 # _model_server_result.job_id 20qiG_yHoKvdR73mxK7mkQ _model_server_result.datetime_utc '2024-11-09 01:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6YW1 # _exptl.entry_id 6YW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 61.017 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BICARBONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6YW1 _cell.length_a 46.531 _cell.length_b 46.531 _cell.length_c 202.345 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C09 48V 1 B 48V 0 1_555 B N DTY 2 B DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 B N01 48V 1 B 48V 0 1_555 B C THR 14 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C DTY 2 B DTY 1 1_555 B N VAL 3 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 C MN MN . A MN 501 1_555 D O1 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 C MN MN . A MN 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 C MN MN . A MN 501 1_555 F O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C H O3 -1' _chem_comp.formula_weight 61.017 _chem_comp.id BCT _chem_comp.mon_nstd_flag . _chem_comp.name 'BICARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BCT doub 105 n n C O2 BCT sing 106 n n C O3 BCT sing 107 n n O3 HO3 BCT sing 108 n n # _atom_sites.entry_id 6YW1 _atom_sites.fract_transf_matrix[1][1] 0.021491 _atom_sites.fract_transf_matrix[1][2] 0.012408 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 501 501 MN MN . D 4 AKG A 1 502 601 AKG AKG . E 5 BCT A 1 503 701 BCT BCT . F 6 HOH A 1 601 215 HOH HOH . F 6 HOH A 2 602 217 HOH HOH . F 6 HOH A 3 603 108 HOH HOH . F 6 HOH A 4 604 220 HOH HOH . F 6 HOH A 5 605 100 HOH HOH . F 6 HOH A 6 606 185 HOH HOH . F 6 HOH A 7 607 208 HOH HOH . F 6 HOH A 8 608 91 HOH HOH . F 6 HOH A 9 609 165 HOH HOH . F 6 HOH A 10 610 200 HOH HOH . F 6 HOH A 11 611 38 HOH HOH . F 6 HOH A 12 612 70 HOH HOH . F 6 HOH A 13 613 222 HOH HOH . F 6 HOH A 14 614 230 HOH HOH . F 6 HOH A 15 615 94 HOH HOH . F 6 HOH A 16 616 141 HOH HOH . F 6 HOH A 17 617 164 HOH HOH . F 6 HOH A 18 618 144 HOH HOH . F 6 HOH A 19 619 50 HOH HOH . F 6 HOH A 20 620 190 HOH HOH . F 6 HOH A 21 621 8 HOH HOH . F 6 HOH A 22 622 123 HOH HOH . F 6 HOH A 23 623 67 HOH HOH . F 6 HOH A 24 624 10 HOH HOH . F 6 HOH A 25 625 23 HOH HOH . F 6 HOH A 26 626 22 HOH HOH . F 6 HOH A 27 627 51 HOH HOH . F 6 HOH A 28 628 5 HOH HOH . F 6 HOH A 29 629 95 HOH HOH . F 6 HOH A 30 630 58 HOH HOH . F 6 HOH A 31 631 24 HOH HOH . F 6 HOH A 32 632 89 HOH HOH . F 6 HOH A 33 633 128 HOH HOH . F 6 HOH A 34 634 26 HOH HOH . F 6 HOH A 35 635 149 HOH HOH . F 6 HOH A 36 636 34 HOH HOH . F 6 HOH A 37 637 11 HOH HOH . F 6 HOH A 38 638 43 HOH HOH . F 6 HOH A 39 639 152 HOH HOH . F 6 HOH A 40 640 28 HOH HOH . F 6 HOH A 41 641 121 HOH HOH . F 6 HOH A 42 642 223 HOH HOH . F 6 HOH A 43 643 135 HOH HOH . F 6 HOH A 44 644 196 HOH HOH . F 6 HOH A 45 645 25 HOH HOH . F 6 HOH A 46 646 99 HOH HOH . F 6 HOH A 47 647 156 HOH HOH . F 6 HOH A 48 648 21 HOH HOH . F 6 HOH A 49 649 148 HOH HOH . F 6 HOH A 50 650 189 HOH HOH . F 6 HOH A 51 651 76 HOH HOH . F 6 HOH A 52 652 145 HOH HOH . F 6 HOH A 53 653 33 HOH HOH . F 6 HOH A 54 654 35 HOH HOH . F 6 HOH A 55 655 2 HOH HOH . F 6 HOH A 56 656 59 HOH HOH . F 6 HOH A 57 657 55 HOH HOH . F 6 HOH A 58 658 4 HOH HOH . F 6 HOH A 59 659 6 HOH HOH . F 6 HOH A 60 660 117 HOH HOH . F 6 HOH A 61 661 150 HOH HOH . F 6 HOH A 62 662 29 HOH HOH . F 6 HOH A 63 663 63 HOH HOH . F 6 HOH A 64 664 126 HOH HOH . F 6 HOH A 65 665 181 HOH HOH . F 6 HOH A 66 666 186 HOH HOH . F 6 HOH A 67 667 83 HOH HOH . F 6 HOH A 68 668 137 HOH HOH . F 6 HOH A 69 669 111 HOH HOH . F 6 HOH A 70 670 146 HOH HOH . F 6 HOH A 71 671 47 HOH HOH . F 6 HOH A 72 672 86 HOH HOH . F 6 HOH A 73 673 131 HOH HOH . F 6 HOH A 74 674 69 HOH HOH . F 6 HOH A 75 675 12 HOH HOH . F 6 HOH A 76 676 124 HOH HOH . F 6 HOH A 77 677 140 HOH HOH . F 6 HOH A 78 678 147 HOH HOH . F 6 HOH A 79 679 7 HOH HOH . F 6 HOH A 80 680 242 HOH HOH . F 6 HOH A 81 681 41 HOH HOH . F 6 HOH A 82 682 88 HOH HOH . F 6 HOH A 83 683 214 HOH HOH . F 6 HOH A 84 684 130 HOH HOH . F 6 HOH A 85 685 20 HOH HOH . F 6 HOH A 86 686 73 HOH HOH . F 6 HOH A 87 687 104 HOH HOH . F 6 HOH A 88 688 233 HOH HOH . F 6 HOH A 89 689 1 HOH HOH . F 6 HOH A 90 690 81 HOH HOH . F 6 HOH A 91 691 103 HOH HOH . F 6 HOH A 92 692 93 HOH HOH . F 6 HOH A 93 693 138 HOH HOH . F 6 HOH A 94 694 71 HOH HOH . F 6 HOH A 95 695 143 HOH HOH . F 6 HOH A 96 696 17 HOH HOH . F 6 HOH A 97 697 3 HOH HOH . F 6 HOH A 98 698 169 HOH HOH . F 6 HOH A 99 699 49 HOH HOH . F 6 HOH A 100 700 60 HOH HOH . F 6 HOH A 101 701 9 HOH HOH . F 6 HOH A 102 702 109 HOH HOH . F 6 HOH A 103 703 113 HOH HOH . F 6 HOH A 104 704 75 HOH HOH . F 6 HOH A 105 705 129 HOH HOH . F 6 HOH A 106 706 65 HOH HOH . F 6 HOH A 107 707 132 HOH HOH . F 6 HOH A 108 708 134 HOH HOH . F 6 HOH A 109 709 30 HOH HOH . F 6 HOH A 110 710 57 HOH HOH . F 6 HOH A 111 711 82 HOH HOH . F 6 HOH A 112 712 13 HOH HOH . F 6 HOH A 113 713 120 HOH HOH . F 6 HOH A 114 714 36 HOH HOH . F 6 HOH A 115 715 122 HOH HOH . F 6 HOH A 116 716 118 HOH HOH . F 6 HOH A 117 717 54 HOH HOH . F 6 HOH A 118 718 46 HOH HOH . F 6 HOH A 119 719 61 HOH HOH . F 6 HOH A 120 720 19 HOH HOH . F 6 HOH A 121 721 229 HOH HOH . F 6 HOH A 122 722 163 HOH HOH . F 6 HOH A 123 723 80 HOH HOH . F 6 HOH A 124 724 244 HOH HOH . F 6 HOH A 125 725 85 HOH HOH . F 6 HOH A 126 726 102 HOH HOH . F 6 HOH A 127 727 27 HOH HOH . F 6 HOH A 128 728 32 HOH HOH . F 6 HOH A 129 729 78 HOH HOH . F 6 HOH A 130 730 240 HOH HOH . F 6 HOH A 131 731 201 HOH HOH . F 6 HOH A 132 732 114 HOH HOH . F 6 HOH A 133 733 184 HOH HOH . F 6 HOH A 134 734 106 HOH HOH . F 6 HOH A 135 735 15 HOH HOH . F 6 HOH A 136 736 45 HOH HOH . F 6 HOH A 137 737 101 HOH HOH . F 6 HOH A 138 738 44 HOH HOH . F 6 HOH A 139 739 53 HOH HOH . F 6 HOH A 140 740 31 HOH HOH . F 6 HOH A 141 741 216 HOH HOH . F 6 HOH A 142 742 234 HOH HOH . F 6 HOH A 143 743 238 HOH HOH . F 6 HOH A 144 744 175 HOH HOH . F 6 HOH A 145 745 77 HOH HOH . F 6 HOH A 146 746 16 HOH HOH . F 6 HOH A 147 747 115 HOH HOH . F 6 HOH A 148 748 40 HOH HOH . F 6 HOH A 149 749 228 HOH HOH . F 6 HOH A 150 750 64 HOH HOH . F 6 HOH A 151 751 241 HOH HOH . F 6 HOH A 152 752 52 HOH HOH . F 6 HOH A 153 753 237 HOH HOH . F 6 HOH A 154 754 127 HOH HOH . F 6 HOH A 155 755 191 HOH HOH . F 6 HOH A 156 756 176 HOH HOH . F 6 HOH A 157 757 173 HOH HOH . F 6 HOH A 158 758 112 HOH HOH . F 6 HOH A 159 759 199 HOH HOH . F 6 HOH A 160 760 84 HOH HOH . F 6 HOH A 161 761 172 HOH HOH . F 6 HOH A 162 762 153 HOH HOH . F 6 HOH A 163 763 110 HOH HOH . F 6 HOH A 164 764 179 HOH HOH . F 6 HOH A 165 765 79 HOH HOH . F 6 HOH A 166 766 204 HOH HOH . F 6 HOH A 167 767 182 HOH HOH . F 6 HOH A 168 768 198 HOH HOH . F 6 HOH A 169 769 239 HOH HOH . F 6 HOH A 170 770 162 HOH HOH . F 6 HOH A 171 771 246 HOH HOH . F 6 HOH A 172 772 194 HOH HOH . F 6 HOH A 173 773 178 HOH HOH . F 6 HOH A 174 774 66 HOH HOH . F 6 HOH A 175 775 133 HOH HOH . F 6 HOH A 176 776 168 HOH HOH . F 6 HOH A 177 777 202 HOH HOH . F 6 HOH A 178 778 243 HOH HOH . F 6 HOH A 179 779 183 HOH HOH . F 6 HOH A 180 780 48 HOH HOH . F 6 HOH A 181 781 195 HOH HOH . F 6 HOH A 182 782 154 HOH HOH . F 6 HOH A 183 783 180 HOH HOH . F 6 HOH A 184 784 139 HOH HOH . F 6 HOH A 185 785 72 HOH HOH . F 6 HOH A 186 786 39 HOH HOH . F 6 HOH A 187 787 210 HOH HOH . F 6 HOH A 188 788 225 HOH HOH . F 6 HOH A 189 789 56 HOH HOH . F 6 HOH A 190 790 170 HOH HOH . F 6 HOH A 191 791 236 HOH HOH . F 6 HOH A 192 792 171 HOH HOH . F 6 HOH A 193 793 62 HOH HOH . F 6 HOH A 194 794 224 HOH HOH . F 6 HOH A 195 795 245 HOH HOH . F 6 HOH A 196 796 177 HOH HOH . F 6 HOH A 197 797 116 HOH HOH . F 6 HOH A 198 798 119 HOH HOH . F 6 HOH A 199 799 188 HOH HOH . F 6 HOH A 200 800 159 HOH HOH . F 6 HOH A 201 801 211 HOH HOH . F 6 HOH A 202 802 167 HOH HOH . F 6 HOH A 203 803 90 HOH HOH . F 6 HOH A 204 804 205 HOH HOH . F 6 HOH A 205 805 227 HOH HOH . F 6 HOH A 206 806 125 HOH HOH . F 6 HOH A 207 807 158 HOH HOH . F 6 HOH A 208 808 87 HOH HOH . F 6 HOH A 209 809 142 HOH HOH . F 6 HOH A 210 810 212 HOH HOH . F 6 HOH A 211 811 209 HOH HOH . F 6 HOH A 212 812 226 HOH HOH . F 6 HOH A 213 813 231 HOH HOH . F 6 HOH A 214 814 206 HOH HOH . F 6 HOH A 215 815 105 HOH HOH . F 6 HOH A 216 816 161 HOH HOH . F 6 HOH A 217 817 213 HOH HOH . F 6 HOH A 218 818 203 HOH HOH . F 6 HOH A 219 819 219 HOH HOH . F 6 HOH A 220 820 166 HOH HOH . F 6 HOH A 221 821 193 HOH HOH . F 6 HOH A 222 822 235 HOH HOH . F 6 HOH A 223 823 160 HOH HOH . F 6 HOH A 224 824 197 HOH HOH . F 6 HOH A 225 825 96 HOH HOH . F 6 HOH A 226 826 218 HOH HOH . F 6 HOH A 227 827 232 HOH HOH . F 6 HOH A 228 828 207 HOH HOH . G 6 HOH B 1 101 174 HOH HOH . G 6 HOH B 2 102 151 HOH HOH . G 6 HOH B 3 103 192 HOH HOH . G 6 HOH B 4 104 14 HOH HOH . G 6 HOH B 5 105 74 HOH HOH . G 6 HOH B 6 106 68 HOH HOH . G 6 HOH B 7 107 92 HOH HOH . G 6 HOH B 8 108 42 HOH HOH . G 6 HOH B 9 109 136 HOH HOH . G 6 HOH B 10 110 97 HOH HOH . G 6 HOH B 11 111 18 HOH HOH . G 6 HOH B 12 112 107 HOH HOH . G 6 HOH B 13 113 157 HOH HOH . G 6 HOH B 14 114 98 HOH HOH . G 6 HOH B 15 115 37 HOH HOH . G 6 HOH B 16 116 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BCT . . . E 5 -12.154 29.22 -9.368 1 70.52 ? C BCT 503 A 1 HETATM 2 O O1 BCT . . . E 5 -12.705 29.241 -10.439 1 69.26 ? O1 BCT 503 A 1 HETATM 3 O O2 BCT . . . E 5 -12.468 29.597 -8.24 1 69.64 ? O2 BCT 503 A 1 HETATM 4 O O3 BCT . . . E 5 -10.917 28.479 -9.421 1 66.65 ? O3 BCT 503 A 1 HETATM 5 H HO3 BCT . . . E 5 -10.394 28.717 -8.795 1 79.98 ? HO3 BCT 503 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #