data_6YW3
#
_model_server_result.job_id            3xdxe8UiMS5b3Ya805tjhQ 
_model_server_result.datetime_utc      '2024-11-12 20:25:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yw3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    6YW3 
#
_exptl.entry_id    6YW3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YW3 
_cell.length_a            76.443 
_cell.length_b            81.285 
_cell.length_c            43.219 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YW3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C09 48V 1 B 48V 0 1_555 B N DTY 2 B DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale2 B N01 48V 1 B 48V 0 1_555 B C THR 14 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C DTY 2 B DTY 1 1_555 B N VAL 3 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc4 D MN MN . A MN 501 1_555 E O1 OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 D MN MN . A MN 501 1_555 E O2' OGA . A OGA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc6 D MN MN . A MN 501 1_555 H O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 294 n n 
C1 O1 OGA doub 295 n n 
C1 O2 OGA sing 296 n n 
C2 O2' OGA doub 297 n n 
C2 N1 OGA sing 298 n n 
C4 C5 OGA sing 299 n n 
C4 N1 OGA sing 300 n n 
C4 H4C1 OGA sing 301 n n 
C4 H4C2 OGA sing 302 n n 
C5 O3 OGA sing 303 n n 
C5 O4 OGA doub 304 n n 
O2 H2 OGA sing 305 n n 
O3 H3 OGA sing 306 n n 
N1 H1 OGA sing 307 n n 
#
_atom_sites.entry_id                     6YW3 
_atom_sites.fract_transf_matrix[1][1]    0.013082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012302 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN A 1 501 501 MN MN . 
E 5 OGA A 1 502 601 OGA OGA . 
F 6 GOL A 1 503 701 GOL GOL . 
G 7 SO4 A 1 504 801 SO4 SO4 . 
H 8 HOH A 1 601 114 HOH HOH . 
H 8 HOH A 2 602 6 HOH HOH . 
H 8 HOH A 3 603 26 HOH HOH . 
H 8 HOH A 4 604 112 HOH HOH . 
H 8 HOH A 5 605 75 HOH HOH . 
H 8 HOH A 6 606 36 HOH HOH . 
H 8 HOH A 7 607 63 HOH HOH . 
H 8 HOH A 8 608 49 HOH HOH . 
H 8 HOH A 9 609 17 HOH HOH . 
H 8 HOH A 10 610 65 HOH HOH . 
H 8 HOH A 11 611 16 HOH HOH . 
H 8 HOH A 12 612 59 HOH HOH . 
H 8 HOH A 13 613 35 HOH HOH . 
H 8 HOH A 14 614 7 HOH HOH . 
H 8 HOH A 15 615 43 HOH HOH . 
H 8 HOH A 16 616 66 HOH HOH . 
H 8 HOH A 17 617 99 HOH HOH . 
H 8 HOH A 18 618 1 HOH HOH . 
H 8 HOH A 19 619 56 HOH HOH . 
H 8 HOH A 20 620 54 HOH HOH . 
H 8 HOH A 21 621 48 HOH HOH . 
H 8 HOH A 22 622 70 HOH HOH . 
H 8 HOH A 23 623 78 HOH HOH . 
H 8 HOH A 24 624 19 HOH HOH . 
H 8 HOH A 25 625 80 HOH HOH . 
H 8 HOH A 26 626 72 HOH HOH . 
H 8 HOH A 27 627 4 HOH HOH . 
H 8 HOH A 28 628 45 HOH HOH . 
H 8 HOH A 29 629 55 HOH HOH . 
H 8 HOH A 30 630 77 HOH HOH . 
H 8 HOH A 31 631 91 HOH HOH . 
H 8 HOH A 32 632 8 HOH HOH . 
H 8 HOH A 33 633 24 HOH HOH . 
H 8 HOH A 34 634 79 HOH HOH . 
H 8 HOH A 35 635 40 HOH HOH . 
H 8 HOH A 36 636 3 HOH HOH . 
H 8 HOH A 37 637 29 HOH HOH . 
H 8 HOH A 38 638 85 HOH HOH . 
H 8 HOH A 39 639 2 HOH HOH . 
H 8 HOH A 40 640 111 HOH HOH . 
H 8 HOH A 41 641 31 HOH HOH . 
H 8 HOH A 42 642 104 HOH HOH . 
H 8 HOH A 43 643 90 HOH HOH . 
H 8 HOH A 44 644 110 HOH HOH . 
H 8 HOH A 45 645 116 HOH HOH . 
H 8 HOH A 46 646 101 HOH HOH . 
H 8 HOH A 47 647 67 HOH HOH . 
H 8 HOH A 48 648 5 HOH HOH . 
H 8 HOH A 49 649 86 HOH HOH . 
H 8 HOH A 50 650 46 HOH HOH . 
H 8 HOH A 51 651 11 HOH HOH . 
H 8 HOH A 52 652 18 HOH HOH . 
H 8 HOH A 53 653 81 HOH HOH . 
H 8 HOH A 54 654 57 HOH HOH . 
H 8 HOH A 55 655 13 HOH HOH . 
H 8 HOH A 56 656 10 HOH HOH . 
H 8 HOH A 57 657 22 HOH HOH . 
H 8 HOH A 58 658 84 HOH HOH . 
H 8 HOH A 59 659 27 HOH HOH . 
H 8 HOH A 60 660 30 HOH HOH . 
H 8 HOH A 61 661 73 HOH HOH . 
H 8 HOH A 62 662 38 HOH HOH . 
H 8 HOH A 63 663 68 HOH HOH . 
H 8 HOH A 64 664 96 HOH HOH . 
H 8 HOH A 65 665 60 HOH HOH . 
H 8 HOH A 66 666 44 HOH HOH . 
H 8 HOH A 67 667 103 HOH HOH . 
H 8 HOH A 68 668 25 HOH HOH . 
H 8 HOH A 69 669 94 HOH HOH . 
H 8 HOH A 70 670 89 HOH HOH . 
H 8 HOH A 71 671 37 HOH HOH . 
H 8 HOH A 72 672 15 HOH HOH . 
H 8 HOH A 73 673 34 HOH HOH . 
H 8 HOH A 74 674 50 HOH HOH . 
H 8 HOH A 75 675 108 HOH HOH . 
H 8 HOH A 76 676 42 HOH HOH . 
H 8 HOH A 77 677 20 HOH HOH . 
H 8 HOH A 78 678 102 HOH HOH . 
H 8 HOH A 79 679 41 HOH HOH . 
H 8 HOH A 80 680 58 HOH HOH . 
H 8 HOH A 81 681 71 HOH HOH . 
H 8 HOH A 82 682 76 HOH HOH . 
H 8 HOH A 83 683 98 HOH HOH . 
H 8 HOH A 84 684 62 HOH HOH . 
H 8 HOH A 85 685 69 HOH HOH . 
H 8 HOH A 86 686 23 HOH HOH . 
H 8 HOH A 87 687 61 HOH HOH . 
H 8 HOH A 88 688 107 HOH HOH . 
H 8 HOH A 89 689 93 HOH HOH . 
H 8 HOH A 90 690 82 HOH HOH . 
H 8 HOH A 91 691 115 HOH HOH . 
H 8 HOH A 92 692 105 HOH HOH . 
H 8 HOH A 93 693 53 HOH HOH . 
H 8 HOH A 94 694 95 HOH HOH . 
H 8 HOH A 95 695 106 HOH HOH . 
H 8 HOH A 96 696 83 HOH HOH . 
H 8 HOH A 97 697 100 HOH HOH . 
H 8 HOH A 98 698 97 HOH HOH . 
I 8 HOH B 1 101 74 HOH HOH . 
I 8 HOH B 2 102 14 HOH HOH . 
I 8 HOH B 3 103 88 HOH HOH . 
I 8 HOH B 4 104 32 HOH HOH . 
I 8 HOH B 5 105 28 HOH HOH . 
I 8 HOH B 6 106 9 HOH HOH . 
I 8 HOH B 7 107 12 HOH HOH . 
I 8 HOH B 8 108 52 HOH HOH . 
I 8 HOH B 9 109 113 HOH HOH . 
I 8 HOH B 10 110 21 HOH HOH . 
I 8 HOH B 11 111 33 HOH HOH . 
J 8 HOH S 1 601 92 HOH HOH . 
J 8 HOH S 2 602 64 HOH HOH . 
J 8 HOH S 3 603 39 HOH HOH . 
J 8 HOH S 4 604 87 HOH HOH . 
J 8 HOH S 5 605 109 HOH HOH . 
J 8 HOH S 6 606 47 HOH HOH . 
J 8 HOH S 7 607 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . E 5 87.938 32.499 54.091 1 25.3 ? C1 OGA 502 A 1 
HETATM 2 C C2 OGA . . . E 5 86.519 32.269 54.57 1 24.28 ? C2 OGA 502 A 1 
HETATM 3 C C4 OGA . . . E 5 85.088 30.997 56.068 1 26.65 ? C4 OGA 502 A 1 
HETATM 4 C C5 OGA . . . E 5 84.724 30.629 57.497 1 26.53 ? C5 OGA 502 A 1 
HETATM 5 O O1 OGA . . . E 5 88.172 32.605 52.842 1 23.4 ? O1 OGA 502 A 1 
HETATM 6 O O2 OGA . . . E 5 88.883 32.599 54.962 1 26.96 ? O2 OGA 502 A 1 
HETATM 7 O O2' OGA . . . E 5 85.475 32.498 53.721 1 19.87 ? O2' OGA 502 A 1 
HETATM 8 O O3 OGA . . . E 5 85.656 30.697 58.338 1 27.51 ? O3 OGA 502 A 1 
HETATM 9 N N1 OGA . . . E 5 86.248 31.838 55.837 1 26.12 ? N1 OGA 502 A 1 
HETATM 10 O O4 OGA . . . E 5 83.531 30.256 57.727 1 25.31 ? O4 OGA 502 A 1 
HETATM 11 H H4C1 OGA . . . E 5 84.318 31.458 55.685 1 31.98 ? H4C1 OGA 502 A 1 
HETATM 12 H H4C2 OGA . . . E 5 85.238 30.161 55.586 1 31.98 ? H4C2 OGA 502 A 1 
HETATM 13 H H1 OGA . . . E 5 86.753 32.044 56.567 1 31.35 ? H1 OGA 502 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#