data_6YW7 # _model_server_result.job_id ZmizeM8KE1UWAZaf8YbRuQ _model_server_result.datetime_utc '2024-12-26 13:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 6YW7 # _exptl.entry_id 6YW7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6YW7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 ATP A 1 501 502 ATP ATP . I 8 ATP B 1 401 502 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 8 162.424 139.6 130.348 1 62.41 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . H 8 162.915 140.822 131.08 1 60.34 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . H 8 161.486 138.728 131.143 1 66.95 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . H 8 161.971 139.891 128.939 1 65.48 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . H 8 165.155 138.956 130.755 1 66.37 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . H 8 165.413 140.439 130.764 1 70.47 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . H 8 165.308 138.148 132.021 1 64.54 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . H 8 163.708 138.661 130.123 1 64.42 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . H 8 166.84 139.275 128.573 1 67.29 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . H 8 165.86 139.637 127.489 1 66.38 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . H 8 167.522 140.383 129.334 1 66.62 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . H 8 166.06 138.311 129.596 1 67.17 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . H 8 167.958 138.328 127.92 1 69.59 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . H 8 169.145 137.967 128.622 1 69.39 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . H 8 169.987 137.165 127.641 1 71.05 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . H 8 170.293 137.998 126.53 1 71.83 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . H 8 171.32 136.698 128.201 1 71.93 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . H 8 171.203 135.341 128.648 1 71.97 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . H 8 172.305 136.871 127.05 1 71.53 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . H 8 172.68 135.615 126.487 1 72.33 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . H 8 171.544 137.62 125.97 1 72.36 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . H 8 172.337 138.742 125.333 1 73.21 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . H 8 172.566 140.005 125.731 1 75.74 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . H 8 173.415 140.639 124.878 1 78.04 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . H 8 173.799 139.747 123.948 1 77.73 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . H 8 174.69 139.732 122.762 1 82.15 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . H 8 175.374 140.836 122.38 1 82.75 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . H 8 174.798 138.58 122.069 1 84.86 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . H 8 174.129 137.472 122.432 1 83.75 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . H 8 173.307 137.413 123.494 1 79.3 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . H 8 173.105 138.498 124.275 1 75.66 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #