data_6YWG # _model_server_result.job_id YeMo7EkcyEfC3EsTE_CVnA _model_server_result.datetime_utc '2025-01-11 14:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6YWG # _exptl.entry_id 6YWG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YWG _cell.length_a 53.718 _cell.length_b 110.559 _cell.length_c 38.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6YWG _atom_sites.fract_transf_matrix[1][1] 0.018616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 201 FMN FMN . D 2 FMN B 1 201 201 FMN FMN . E 3 GOL B 1 202 1 GOL GOL . F 3 GOL B 1 203 2 GOL GOL . G 4 HOH A 1 301 128 HOH HOH . G 4 HOH A 2 302 103 HOH HOH . G 4 HOH A 3 303 121 HOH HOH . G 4 HOH A 4 304 148 HOH HOH . G 4 HOH A 5 305 161 HOH HOH . G 4 HOH A 6 306 101 HOH HOH . G 4 HOH A 7 307 195 HOH HOH . G 4 HOH A 8 308 70 HOH HOH . G 4 HOH A 9 309 57 HOH HOH . G 4 HOH A 10 310 194 HOH HOH . G 4 HOH A 11 311 112 HOH HOH . G 4 HOH A 12 312 36 HOH HOH . G 4 HOH A 13 313 166 HOH HOH . G 4 HOH A 14 314 65 HOH HOH . G 4 HOH A 15 315 84 HOH HOH . G 4 HOH A 16 316 17 HOH HOH . G 4 HOH A 17 317 163 HOH HOH . G 4 HOH A 18 318 94 HOH HOH . G 4 HOH A 19 319 106 HOH HOH . G 4 HOH A 20 320 46 HOH HOH . G 4 HOH A 21 321 111 HOH HOH . G 4 HOH A 22 322 48 HOH HOH . G 4 HOH A 23 323 69 HOH HOH . G 4 HOH A 24 324 49 HOH HOH . G 4 HOH A 25 325 18 HOH HOH . G 4 HOH A 26 326 35 HOH HOH . G 4 HOH A 27 327 104 HOH HOH . G 4 HOH A 28 328 62 HOH HOH . G 4 HOH A 29 329 81 HOH HOH . G 4 HOH A 30 330 100 HOH HOH . G 4 HOH A 31 331 15 HOH HOH . G 4 HOH A 32 332 179 HOH HOH . G 4 HOH A 33 333 133 HOH HOH . G 4 HOH A 34 334 89 HOH HOH . G 4 HOH A 35 335 167 HOH HOH . G 4 HOH A 36 336 55 HOH HOH . G 4 HOH A 37 337 28 HOH HOH . G 4 HOH A 38 338 98 HOH HOH . G 4 HOH A 39 339 99 HOH HOH . G 4 HOH A 40 340 61 HOH HOH . G 4 HOH A 41 341 177 HOH HOH . G 4 HOH A 42 342 53 HOH HOH . G 4 HOH A 43 343 59 HOH HOH . G 4 HOH A 44 344 90 HOH HOH . G 4 HOH A 45 345 159 HOH HOH . G 4 HOH A 46 346 41 HOH HOH . G 4 HOH A 47 347 175 HOH HOH . G 4 HOH A 48 348 152 HOH HOH . G 4 HOH A 49 349 51 HOH HOH . G 4 HOH A 50 350 16 HOH HOH . G 4 HOH A 51 351 125 HOH HOH . G 4 HOH A 52 352 66 HOH HOH . G 4 HOH A 53 353 83 HOH HOH . G 4 HOH A 54 354 131 HOH HOH . G 4 HOH A 55 355 151 HOH HOH . G 4 HOH A 56 356 157 HOH HOH . G 4 HOH A 57 357 107 HOH HOH . G 4 HOH A 58 358 33 HOH HOH . G 4 HOH A 59 359 191 HOH HOH . G 4 HOH A 60 360 196 HOH HOH . G 4 HOH A 61 361 44 HOH HOH . G 4 HOH A 62 362 126 HOH HOH . G 4 HOH A 63 363 86 HOH HOH . G 4 HOH A 64 364 97 HOH HOH . G 4 HOH A 65 365 50 HOH HOH . G 4 HOH A 66 366 40 HOH HOH . G 4 HOH A 67 367 74 HOH HOH . G 4 HOH A 68 368 88 HOH HOH . G 4 HOH A 69 369 77 HOH HOH . G 4 HOH A 70 370 185 HOH HOH . G 4 HOH A 71 371 13 HOH HOH . G 4 HOH A 72 372 124 HOH HOH . G 4 HOH A 73 373 42 HOH HOH . G 4 HOH A 74 374 71 HOH HOH . G 4 HOH A 75 375 47 HOH HOH . G 4 HOH A 76 376 75 HOH HOH . G 4 HOH A 77 377 58 HOH HOH . G 4 HOH A 78 378 45 HOH HOH . G 4 HOH A 79 379 174 HOH HOH . G 4 HOH A 80 380 32 HOH HOH . G 4 HOH A 81 381 210 HOH HOH . G 4 HOH A 82 382 110 HOH HOH . G 4 HOH A 83 383 192 HOH HOH . G 4 HOH A 84 384 93 HOH HOH . G 4 HOH A 85 385 92 HOH HOH . G 4 HOH A 86 386 80 HOH HOH . G 4 HOH A 87 387 54 HOH HOH . G 4 HOH A 88 388 168 HOH HOH . G 4 HOH A 89 389 207 HOH HOH . G 4 HOH A 90 390 127 HOH HOH . G 4 HOH A 91 391 153 HOH HOH . G 4 HOH A 92 392 183 HOH HOH . G 4 HOH A 93 393 165 HOH HOH . G 4 HOH A 94 394 132 HOH HOH . G 4 HOH A 95 395 178 HOH HOH . G 4 HOH A 96 396 95 HOH HOH . G 4 HOH A 97 397 180 HOH HOH . G 4 HOH A 98 398 197 HOH HOH . G 4 HOH A 99 399 91 HOH HOH . G 4 HOH A 100 400 176 HOH HOH . H 4 HOH B 1 301 164 HOH HOH . H 4 HOH B 2 302 162 HOH HOH . H 4 HOH B 3 303 6 HOH HOH . H 4 HOH B 4 304 198 HOH HOH . H 4 HOH B 5 305 123 HOH HOH . H 4 HOH B 6 306 114 HOH HOH . H 4 HOH B 7 307 193 HOH HOH . H 4 HOH B 8 308 160 HOH HOH . H 4 HOH B 9 309 3 HOH HOH . H 4 HOH B 10 310 201 HOH HOH . H 4 HOH B 11 311 144 HOH HOH . H 4 HOH B 12 312 63 HOH HOH . H 4 HOH B 13 313 67 HOH HOH . H 4 HOH B 14 314 109 HOH HOH . H 4 HOH B 15 315 105 HOH HOH . H 4 HOH B 16 316 146 HOH HOH . H 4 HOH B 17 317 10 HOH HOH . H 4 HOH B 18 318 155 HOH HOH . H 4 HOH B 19 319 14 HOH HOH . H 4 HOH B 20 320 205 HOH HOH . H 4 HOH B 21 321 9 HOH HOH . H 4 HOH B 22 322 68 HOH HOH . H 4 HOH B 23 323 145 HOH HOH . H 4 HOH B 24 324 129 HOH HOH . H 4 HOH B 25 325 140 HOH HOH . H 4 HOH B 26 326 43 HOH HOH . H 4 HOH B 27 327 30 HOH HOH . H 4 HOH B 28 328 96 HOH HOH . H 4 HOH B 29 329 78 HOH HOH . H 4 HOH B 30 330 64 HOH HOH . H 4 HOH B 31 331 122 HOH HOH . H 4 HOH B 32 332 26 HOH HOH . H 4 HOH B 33 333 22 HOH HOH . H 4 HOH B 34 334 31 HOH HOH . H 4 HOH B 35 335 139 HOH HOH . H 4 HOH B 36 336 7 HOH HOH . H 4 HOH B 37 337 206 HOH HOH . H 4 HOH B 38 338 113 HOH HOH . H 4 HOH B 39 339 21 HOH HOH . H 4 HOH B 40 340 76 HOH HOH . H 4 HOH B 41 341 158 HOH HOH . H 4 HOH B 42 342 56 HOH HOH . H 4 HOH B 43 343 4 HOH HOH . H 4 HOH B 44 344 149 HOH HOH . H 4 HOH B 45 345 120 HOH HOH . H 4 HOH B 46 346 25 HOH HOH . H 4 HOH B 47 347 188 HOH HOH . H 4 HOH B 48 348 108 HOH HOH . H 4 HOH B 49 349 34 HOH HOH . H 4 HOH B 50 350 85 HOH HOH . H 4 HOH B 51 351 12 HOH HOH . H 4 HOH B 52 352 181 HOH HOH . H 4 HOH B 53 353 2 HOH HOH . H 4 HOH B 54 354 172 HOH HOH . H 4 HOH B 55 355 173 HOH HOH . H 4 HOH B 56 356 79 HOH HOH . H 4 HOH B 57 357 87 HOH HOH . H 4 HOH B 58 358 5 HOH HOH . H 4 HOH B 59 359 169 HOH HOH . H 4 HOH B 60 360 82 HOH HOH . H 4 HOH B 61 361 134 HOH HOH . H 4 HOH B 62 362 136 HOH HOH . H 4 HOH B 63 363 23 HOH HOH . H 4 HOH B 64 364 60 HOH HOH . H 4 HOH B 65 365 37 HOH HOH . H 4 HOH B 66 366 73 HOH HOH . H 4 HOH B 67 367 211 HOH HOH . H 4 HOH B 68 368 202 HOH HOH . H 4 HOH B 69 369 199 HOH HOH . H 4 HOH B 70 370 20 HOH HOH . H 4 HOH B 71 371 29 HOH HOH . H 4 HOH B 72 372 8 HOH HOH . H 4 HOH B 73 373 200 HOH HOH . H 4 HOH B 74 374 11 HOH HOH . H 4 HOH B 75 375 102 HOH HOH . H 4 HOH B 76 376 135 HOH HOH . H 4 HOH B 77 377 38 HOH HOH . H 4 HOH B 78 378 143 HOH HOH . H 4 HOH B 79 379 187 HOH HOH . H 4 HOH B 80 380 27 HOH HOH . H 4 HOH B 81 381 72 HOH HOH . H 4 HOH B 82 382 137 HOH HOH . H 4 HOH B 83 383 170 HOH HOH . H 4 HOH B 84 384 156 HOH HOH . H 4 HOH B 85 385 141 HOH HOH . H 4 HOH B 86 386 182 HOH HOH . H 4 HOH B 87 387 209 HOH HOH . H 4 HOH B 88 388 39 HOH HOH . H 4 HOH B 89 389 204 HOH HOH . H 4 HOH B 90 390 171 HOH HOH . H 4 HOH B 91 391 208 HOH HOH . H 4 HOH B 92 392 130 HOH HOH . H 4 HOH B 93 393 147 HOH HOH . H 4 HOH B 94 394 19 HOH HOH . H 4 HOH B 95 395 154 HOH HOH . H 4 HOH B 96 396 184 HOH HOH . H 4 HOH B 97 397 186 HOH HOH . H 4 HOH B 98 398 203 HOH HOH . H 4 HOH B 99 399 24 HOH HOH . H 4 HOH B 100 400 142 HOH HOH . H 4 HOH B 101 401 138 HOH HOH . H 4 HOH B 102 402 1 HOH HOH . H 4 HOH B 103 403 150 HOH HOH . H 4 HOH B 104 404 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 34.586 -11.417 22.775 1 11.23 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . D 2 35.863 -11.152 22.436 1 12.8 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . D 2 36.626 -10.753 23.351 1 13.02 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . D 2 36.353 -11.311 21.182 1 10.64 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . D 2 35.586 -11.721 20.143 1 11.08 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . D 2 36.029 -11.848 18.982 1 11.27 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . D 2 34.179 -12.022 20.436 1 10.17 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . D 2 33.336 -12.451 19.471 1 9.69 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . D 2 32.052 -12.728 19.783 1 9.88 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . D 2 31.179 -13.166 18.798 1 9.47 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . D 2 29.858 -13.453 19.104 1 10.26 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . D 2 28.945 -13.9 18 1 9.77 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . D 2 29.359 -13.307 20.487 1 10.31 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . D 2 27.928 -13.604 20.844 1 10.13 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . D 2 30.22 -12.867 21.474 1 9.5 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . D 2 31.545 -12.579 21.17 1 9.52 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . D 2 32.421 -12.126 22.166 1 10.1 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . D 2 33.73 -11.841 21.826 1 10.38 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . D 2 31.974 -11.847 23.535 1 10.7 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . D 2 32.1 -12.927 24.56 1 11.72 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . D 2 31.65 -14.113 23.938 1 12.44 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . D 2 31.22 -12.545 25.747 1 12.14 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . D 2 29.877 -12.283 25.307 1 13.56 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . D 2 31.723 -11.289 26.46 1 12.06 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . D 2 32.993 -11.565 27.043 1 12.9 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . D 2 30.775 -10.768 27.529 1 14.85 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . D 2 30.267 -11.818 28.345 1 16.55 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . D 2 30.991 -12.363 29.682 1 18.77 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . D 2 31.078 -11.211 30.654 1 20.36 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . D 2 30.045 -13.458 30.134 1 20.32 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . D 2 32.343 -12.883 29.256 1 20.27 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #