data_6YWH # _model_server_result.job_id EeQsqSw82fKTb4VH7z3YgA _model_server_result.datetime_utc '2025-01-11 13:00:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6YWH # _exptl.entry_id 6YWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YWH _cell.length_a 53.661 _cell.length_b 110.471 _cell.length_c 39.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6YWH _atom_sites.fract_transf_matrix[1][1] 0.018636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 201 FMN FMN . D 3 MES A 1 202 1 MES MES . E 4 PG4 A 1 203 1 PG4 PG4 . F 5 PGE A 1 204 1 PGE PGE . G 2 FMN B 1 201 201 FMN FMN . H 6 HOH A 1 301 74 HOH HOH . H 6 HOH A 2 302 41 HOH HOH . H 6 HOH A 3 303 135 HOH HOH . H 6 HOH A 4 304 185 HOH HOH . H 6 HOH A 5 305 175 HOH HOH . H 6 HOH A 6 306 180 HOH HOH . H 6 HOH A 7 307 181 HOH HOH . H 6 HOH A 8 308 159 HOH HOH . H 6 HOH A 9 309 76 HOH HOH . H 6 HOH A 10 310 134 HOH HOH . H 6 HOH A 11 311 109 HOH HOH . H 6 HOH A 12 312 46 HOH HOH . H 6 HOH A 13 313 167 HOH HOH . H 6 HOH A 14 314 67 HOH HOH . H 6 HOH A 15 315 10 HOH HOH . H 6 HOH A 16 316 63 HOH HOH . H 6 HOH A 17 317 56 HOH HOH . H 6 HOH A 18 318 51 HOH HOH . H 6 HOH A 19 319 45 HOH HOH . H 6 HOH A 20 320 37 HOH HOH . H 6 HOH A 21 321 79 HOH HOH . H 6 HOH A 22 322 38 HOH HOH . H 6 HOH A 23 323 137 HOH HOH . H 6 HOH A 24 324 198 HOH HOH . H 6 HOH A 25 325 117 HOH HOH . H 6 HOH A 26 326 8 HOH HOH . H 6 HOH A 27 327 161 HOH HOH . H 6 HOH A 28 328 208 HOH HOH . H 6 HOH A 29 329 138 HOH HOH . H 6 HOH A 30 330 17 HOH HOH . H 6 HOH A 31 331 61 HOH HOH . H 6 HOH A 32 332 207 HOH HOH . H 6 HOH A 33 333 22 HOH HOH . H 6 HOH A 34 334 155 HOH HOH . H 6 HOH A 35 335 57 HOH HOH . H 6 HOH A 36 336 19 HOH HOH . H 6 HOH A 37 337 154 HOH HOH . H 6 HOH A 38 338 129 HOH HOH . H 6 HOH A 39 339 30 HOH HOH . H 6 HOH A 40 340 122 HOH HOH . H 6 HOH A 41 341 81 HOH HOH . H 6 HOH A 42 342 28 HOH HOH . H 6 HOH A 43 343 163 HOH HOH . H 6 HOH A 44 344 128 HOH HOH . H 6 HOH A 45 345 34 HOH HOH . H 6 HOH A 46 346 40 HOH HOH . H 6 HOH A 47 347 52 HOH HOH . H 6 HOH A 48 348 118 HOH HOH . H 6 HOH A 49 349 186 HOH HOH . H 6 HOH A 50 350 88 HOH HOH . H 6 HOH A 51 351 20 HOH HOH . H 6 HOH A 52 352 199 HOH HOH . H 6 HOH A 53 353 123 HOH HOH . H 6 HOH A 54 354 156 HOH HOH . H 6 HOH A 55 355 6 HOH HOH . H 6 HOH A 56 356 213 HOH HOH . H 6 HOH A 57 357 153 HOH HOH . H 6 HOH A 58 358 66 HOH HOH . H 6 HOH A 59 359 114 HOH HOH . H 6 HOH A 60 360 105 HOH HOH . H 6 HOH A 61 361 139 HOH HOH . H 6 HOH A 62 362 119 HOH HOH . H 6 HOH A 63 363 32 HOH HOH . H 6 HOH A 64 364 166 HOH HOH . H 6 HOH A 65 365 90 HOH HOH . H 6 HOH A 66 366 197 HOH HOH . H 6 HOH A 67 367 75 HOH HOH . H 6 HOH A 68 368 43 HOH HOH . H 6 HOH A 69 369 80 HOH HOH . H 6 HOH A 70 370 58 HOH HOH . H 6 HOH A 71 371 7 HOH HOH . H 6 HOH A 72 372 16 HOH HOH . H 6 HOH A 73 373 70 HOH HOH . H 6 HOH A 74 374 176 HOH HOH . H 6 HOH A 75 375 127 HOH HOH . H 6 HOH A 76 376 120 HOH HOH . H 6 HOH A 77 377 33 HOH HOH . H 6 HOH A 78 378 183 HOH HOH . H 6 HOH A 79 379 50 HOH HOH . H 6 HOH A 80 380 18 HOH HOH . H 6 HOH A 81 381 160 HOH HOH . H 6 HOH A 82 382 152 HOH HOH . H 6 HOH A 83 383 87 HOH HOH . H 6 HOH A 84 384 104 HOH HOH . H 6 HOH A 85 385 177 HOH HOH . H 6 HOH A 86 386 141 HOH HOH . H 6 HOH A 87 387 72 HOH HOH . H 6 HOH A 88 388 212 HOH HOH . H 6 HOH A 89 389 35 HOH HOH . H 6 HOH A 90 390 164 HOH HOH . H 6 HOH A 91 391 195 HOH HOH . H 6 HOH A 92 392 71 HOH HOH . H 6 HOH A 93 393 149 HOH HOH . H 6 HOH A 94 394 191 HOH HOH . H 6 HOH A 95 395 172 HOH HOH . H 6 HOH A 96 396 190 HOH HOH . H 6 HOH A 97 397 125 HOH HOH . H 6 HOH A 98 398 182 HOH HOH . H 6 HOH A 99 399 192 HOH HOH . H 6 HOH A 100 400 184 HOH HOH . H 6 HOH A 101 401 86 HOH HOH . H 6 HOH A 102 402 187 HOH HOH . H 6 HOH A 103 403 140 HOH HOH . H 6 HOH A 104 404 188 HOH HOH . H 6 HOH A 105 405 189 HOH HOH . I 6 HOH B 1 301 24 HOH HOH . I 6 HOH B 2 302 196 HOH HOH . I 6 HOH B 3 303 78 HOH HOH . I 6 HOH B 4 304 101 HOH HOH . I 6 HOH B 5 305 211 HOH HOH . I 6 HOH B 6 306 54 HOH HOH . I 6 HOH B 7 307 126 HOH HOH . I 6 HOH B 8 308 200 HOH HOH . I 6 HOH B 9 309 23 HOH HOH . I 6 HOH B 10 310 93 HOH HOH . I 6 HOH B 11 311 112 HOH HOH . I 6 HOH B 12 312 21 HOH HOH . I 6 HOH B 13 313 121 HOH HOH . I 6 HOH B 14 314 144 HOH HOH . I 6 HOH B 15 315 206 HOH HOH . I 6 HOH B 16 316 49 HOH HOH . I 6 HOH B 17 317 84 HOH HOH . I 6 HOH B 18 318 171 HOH HOH . I 6 HOH B 19 319 96 HOH HOH . I 6 HOH B 20 320 5 HOH HOH . I 6 HOH B 21 321 68 HOH HOH . I 6 HOH B 22 322 168 HOH HOH . I 6 HOH B 23 323 85 HOH HOH . I 6 HOH B 24 324 99 HOH HOH . I 6 HOH B 25 325 91 HOH HOH . I 6 HOH B 26 326 60 HOH HOH . I 6 HOH B 27 327 110 HOH HOH . I 6 HOH B 28 328 169 HOH HOH . I 6 HOH B 29 329 62 HOH HOH . I 6 HOH B 30 330 31 HOH HOH . I 6 HOH B 31 331 12 HOH HOH . I 6 HOH B 32 332 107 HOH HOH . I 6 HOH B 33 333 29 HOH HOH . I 6 HOH B 34 334 115 HOH HOH . I 6 HOH B 35 335 97 HOH HOH . I 6 HOH B 36 336 1 HOH HOH . I 6 HOH B 37 337 14 HOH HOH . I 6 HOH B 38 338 42 HOH HOH . I 6 HOH B 39 339 111 HOH HOH . I 6 HOH B 40 340 64 HOH HOH . I 6 HOH B 41 341 116 HOH HOH . I 6 HOH B 42 342 13 HOH HOH . I 6 HOH B 43 343 47 HOH HOH . I 6 HOH B 44 344 26 HOH HOH . I 6 HOH B 45 345 205 HOH HOH . I 6 HOH B 46 346 102 HOH HOH . I 6 HOH B 47 347 59 HOH HOH . I 6 HOH B 48 348 98 HOH HOH . I 6 HOH B 49 349 9 HOH HOH . I 6 HOH B 50 350 39 HOH HOH . I 6 HOH B 51 351 145 HOH HOH . I 6 HOH B 52 352 142 HOH HOH . I 6 HOH B 53 353 173 HOH HOH . I 6 HOH B 54 354 100 HOH HOH . I 6 HOH B 55 355 174 HOH HOH . I 6 HOH B 56 356 3 HOH HOH . I 6 HOH B 57 357 89 HOH HOH . I 6 HOH B 58 358 106 HOH HOH . I 6 HOH B 59 359 77 HOH HOH . I 6 HOH B 60 360 148 HOH HOH . I 6 HOH B 61 361 44 HOH HOH . I 6 HOH B 62 362 131 HOH HOH . I 6 HOH B 63 363 94 HOH HOH . I 6 HOH B 64 364 170 HOH HOH . I 6 HOH B 65 365 162 HOH HOH . I 6 HOH B 66 366 83 HOH HOH . I 6 HOH B 67 367 82 HOH HOH . I 6 HOH B 68 368 209 HOH HOH . I 6 HOH B 69 369 11 HOH HOH . I 6 HOH B 70 370 73 HOH HOH . I 6 HOH B 71 371 55 HOH HOH . I 6 HOH B 72 372 69 HOH HOH . I 6 HOH B 73 373 103 HOH HOH . I 6 HOH B 74 374 4 HOH HOH . I 6 HOH B 75 375 130 HOH HOH . I 6 HOH B 76 376 36 HOH HOH . I 6 HOH B 77 377 25 HOH HOH . I 6 HOH B 78 378 108 HOH HOH . I 6 HOH B 79 379 147 HOH HOH . I 6 HOH B 80 380 133 HOH HOH . I 6 HOH B 81 381 204 HOH HOH . I 6 HOH B 82 382 27 HOH HOH . I 6 HOH B 83 383 95 HOH HOH . I 6 HOH B 84 384 165 HOH HOH . I 6 HOH B 85 385 194 HOH HOH . I 6 HOH B 86 386 193 HOH HOH . I 6 HOH B 87 387 179 HOH HOH . I 6 HOH B 88 388 157 HOH HOH . I 6 HOH B 89 389 178 HOH HOH . I 6 HOH B 90 390 201 HOH HOH . I 6 HOH B 91 391 146 HOH HOH . I 6 HOH B 92 392 92 HOH HOH . I 6 HOH B 93 393 53 HOH HOH . I 6 HOH B 94 394 132 HOH HOH . I 6 HOH B 95 395 143 HOH HOH . I 6 HOH B 96 396 15 HOH HOH . I 6 HOH B 97 397 150 HOH HOH . I 6 HOH B 98 398 203 HOH HOH . I 6 HOH B 99 399 158 HOH HOH . I 6 HOH B 100 400 113 HOH HOH . I 6 HOH B 101 401 151 HOH HOH . I 6 HOH B 102 402 124 HOH HOH . I 6 HOH B 103 403 210 HOH HOH . I 6 HOH B 104 404 2 HOH HOH . I 6 HOH B 105 405 65 HOH HOH . I 6 HOH B 106 406 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 2 7.563 11.499 -22.735 1 9.69 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . G 2 8.838 11.245 -22.402 1 9.18 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . G 2 9.637 10.83 -23.284 1 10.27 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . G 2 9.307 11.424 -21.15 1 9.33 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . G 2 8.55 11.851 -20.116 1 9.16 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . G 2 9.031 11.98 -18.967 1 9.92 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . G 2 7.165 12.136 -20.404 1 8.81 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . G 2 6.326 12.56 -19.446 1 8.39 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . G 2 5.035 12.812 -19.735 1 8.47 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . G 2 4.146 13.235 -18.761 1 8.11 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . G 2 2.823 13.512 -19.036 1 8.09 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . G 2 1.91 13.936 -17.928 1 8.39 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . G 2 2.327 13.371 -20.399 1 7.97 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . G 2 0.882 13.669 -20.728 1 8.75 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . G 2 3.207 12.962 -21.393 1 8.28 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . G 2 4.535 12.664 -21.105 1 8.17 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . G 2 5.421 12.196 -22.084 1 8.48 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . G 2 6.736 11.942 -21.775 1 8.2 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . G 2 4.956 11.875 -23.424 1 8.22 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . G 2 5.069 12.932 -24.475 1 9.17 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . G 2 4.589 14.138 -23.909 1 9.21 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . G 2 4.196 12.56 -25.681 1 9.28 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . G 2 2.859 12.284 -25.27 1 10.79 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . G 2 4.719 11.339 -26.427 1 9.69 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . G 2 6.006 11.677 -26.952 1 10.53 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . G 2 3.794 10.832 -27.529 1 10.35 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . G 2 3.253 11.887 -28.329 1 11.08 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . G 2 3.978 12.457 -29.634 1 12.05 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . G 2 4.069 11.3 -30.605 1 12.47 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . G 2 3.012 13.536 -30.069 1 13.76 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . G 2 5.316 12.983 -29.204 1 12.62 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #