data_6YWI # _model_server_result.job_id oVdNASxxterJd6c4LFN0NQ _model_server_result.datetime_utc '2025-01-11 14:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6YWI # _exptl.entry_id 6YWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YWI _cell.length_a 53.55 _cell.length_b 109.84 _cell.length_c 38.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6YWI _atom_sites.fract_transf_matrix[1][1] 0.018674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 201 FMN FMN . D 3 MES A 1 202 1 MES MES . E 4 GOL A 1 203 2 GOL GOL . F 2 FMN B 1 201 201 FMN FMN . G 4 GOL B 1 202 1 GOL GOL . H 5 HOH A 1 301 130 HOH HOH . H 5 HOH A 2 302 28 HOH HOH . H 5 HOH A 3 303 69 HOH HOH . H 5 HOH A 4 304 140 HOH HOH . H 5 HOH A 5 305 38 HOH HOH . H 5 HOH A 6 306 104 HOH HOH . H 5 HOH A 7 307 127 HOH HOH . H 5 HOH A 8 308 67 HOH HOH . H 5 HOH A 9 309 94 HOH HOH . H 5 HOH A 10 310 107 HOH HOH . H 5 HOH A 11 311 70 HOH HOH . H 5 HOH A 12 312 163 HOH HOH . H 5 HOH A 13 313 35 HOH HOH . H 5 HOH A 14 314 4 HOH HOH . H 5 HOH A 15 315 142 HOH HOH . H 5 HOH A 16 316 20 HOH HOH . H 5 HOH A 17 317 135 HOH HOH . H 5 HOH A 18 318 119 HOH HOH . H 5 HOH A 19 319 84 HOH HOH . H 5 HOH A 20 320 58 HOH HOH . H 5 HOH A 21 321 141 HOH HOH . H 5 HOH A 22 322 74 HOH HOH . H 5 HOH A 23 323 171 HOH HOH . H 5 HOH A 24 324 56 HOH HOH . H 5 HOH A 25 325 156 HOH HOH . H 5 HOH A 26 326 160 HOH HOH . H 5 HOH A 27 327 117 HOH HOH . H 5 HOH A 28 328 12 HOH HOH . H 5 HOH A 29 329 152 HOH HOH . H 5 HOH A 30 330 17 HOH HOH . H 5 HOH A 31 331 14 HOH HOH . H 5 HOH A 32 332 43 HOH HOH . H 5 HOH A 33 333 91 HOH HOH . H 5 HOH A 34 334 138 HOH HOH . H 5 HOH A 35 335 78 HOH HOH . H 5 HOH A 36 336 55 HOH HOH . H 5 HOH A 37 337 110 HOH HOH . H 5 HOH A 38 338 34 HOH HOH . H 5 HOH A 39 339 77 HOH HOH . H 5 HOH A 40 340 37 HOH HOH . H 5 HOH A 41 341 54 HOH HOH . H 5 HOH A 42 342 59 HOH HOH . H 5 HOH A 43 343 96 HOH HOH . H 5 HOH A 44 344 50 HOH HOH . H 5 HOH A 45 345 33 HOH HOH . H 5 HOH A 46 346 13 HOH HOH . H 5 HOH A 47 347 75 HOH HOH . H 5 HOH A 48 348 88 HOH HOH . H 5 HOH A 49 349 157 HOH HOH . H 5 HOH A 50 350 53 HOH HOH . H 5 HOH A 51 351 134 HOH HOH . H 5 HOH A 52 352 116 HOH HOH . H 5 HOH A 53 353 120 HOH HOH . H 5 HOH A 54 354 64 HOH HOH . H 5 HOH A 55 355 76 HOH HOH . H 5 HOH A 56 356 42 HOH HOH . H 5 HOH A 57 357 61 HOH HOH . H 5 HOH A 58 358 113 HOH HOH . H 5 HOH A 59 359 71 HOH HOH . H 5 HOH A 60 360 81 HOH HOH . H 5 HOH A 61 361 2 HOH HOH . H 5 HOH A 62 362 131 HOH HOH . H 5 HOH A 63 363 18 HOH HOH . H 5 HOH A 64 364 90 HOH HOH . H 5 HOH A 65 365 49 HOH HOH . H 5 HOH A 66 366 183 HOH HOH . H 5 HOH A 67 367 168 HOH HOH . H 5 HOH A 68 368 123 HOH HOH . H 5 HOH A 69 369 121 HOH HOH . H 5 HOH A 70 370 36 HOH HOH . H 5 HOH A 71 371 192 HOH HOH . H 5 HOH A 72 372 139 HOH HOH . H 5 HOH A 73 373 159 HOH HOH . H 5 HOH A 74 374 30 HOH HOH . H 5 HOH A 75 375 162 HOH HOH . H 5 HOH A 76 376 60 HOH HOH . H 5 HOH A 77 377 29 HOH HOH . H 5 HOH A 78 378 82 HOH HOH . H 5 HOH A 79 379 184 HOH HOH . H 5 HOH A 80 380 31 HOH HOH . H 5 HOH A 81 381 126 HOH HOH . H 5 HOH A 82 382 167 HOH HOH . H 5 HOH A 83 383 86 HOH HOH . H 5 HOH A 84 384 182 HOH HOH . H 5 HOH A 85 385 158 HOH HOH . H 5 HOH A 86 386 164 HOH HOH . H 5 HOH A 87 387 65 HOH HOH . H 5 HOH A 88 388 161 HOH HOH . I 5 HOH B 1 301 151 HOH HOH . I 5 HOH B 2 302 177 HOH HOH . I 5 HOH B 3 303 46 HOH HOH . I 5 HOH B 4 304 165 HOH HOH . I 5 HOH B 5 305 118 HOH HOH . I 5 HOH B 6 306 15 HOH HOH . I 5 HOH B 7 307 103 HOH HOH . I 5 HOH B 8 308 19 HOH HOH . I 5 HOH B 9 309 92 HOH HOH . I 5 HOH B 10 310 181 HOH HOH . I 5 HOH B 11 311 187 HOH HOH . I 5 HOH B 12 312 24 HOH HOH . I 5 HOH B 13 313 144 HOH HOH . I 5 HOH B 14 314 148 HOH HOH . I 5 HOH B 15 315 173 HOH HOH . I 5 HOH B 16 316 170 HOH HOH . I 5 HOH B 17 317 108 HOH HOH . I 5 HOH B 18 318 72 HOH HOH . I 5 HOH B 19 319 7 HOH HOH . I 5 HOH B 20 320 125 HOH HOH . I 5 HOH B 21 321 150 HOH HOH . I 5 HOH B 22 322 101 HOH HOH . I 5 HOH B 23 323 79 HOH HOH . I 5 HOH B 24 324 93 HOH HOH . I 5 HOH B 25 325 10 HOH HOH . I 5 HOH B 26 326 172 HOH HOH . I 5 HOH B 27 327 111 HOH HOH . I 5 HOH B 28 328 105 HOH HOH . I 5 HOH B 29 329 21 HOH HOH . I 5 HOH B 30 330 39 HOH HOH . I 5 HOH B 31 331 124 HOH HOH . I 5 HOH B 32 332 22 HOH HOH . I 5 HOH B 33 333 193 HOH HOH . I 5 HOH B 34 334 112 HOH HOH . I 5 HOH B 35 335 8 HOH HOH . I 5 HOH B 36 336 83 HOH HOH . I 5 HOH B 37 337 174 HOH HOH . I 5 HOH B 38 338 137 HOH HOH . I 5 HOH B 39 339 98 HOH HOH . I 5 HOH B 40 340 100 HOH HOH . I 5 HOH B 41 341 11 HOH HOH . I 5 HOH B 42 342 149 HOH HOH . I 5 HOH B 43 343 47 HOH HOH . I 5 HOH B 44 344 16 HOH HOH . I 5 HOH B 45 345 166 HOH HOH . I 5 HOH B 46 346 189 HOH HOH . I 5 HOH B 47 347 32 HOH HOH . I 5 HOH B 48 348 25 HOH HOH . I 5 HOH B 49 349 51 HOH HOH . I 5 HOH B 50 350 48 HOH HOH . I 5 HOH B 51 351 3 HOH HOH . I 5 HOH B 52 352 143 HOH HOH . I 5 HOH B 53 353 62 HOH HOH . I 5 HOH B 54 354 178 HOH HOH . I 5 HOH B 55 355 6 HOH HOH . I 5 HOH B 56 356 102 HOH HOH . I 5 HOH B 57 357 122 HOH HOH . I 5 HOH B 58 358 188 HOH HOH . I 5 HOH B 59 359 80 HOH HOH . I 5 HOH B 60 360 87 HOH HOH . I 5 HOH B 61 361 191 HOH HOH . I 5 HOH B 62 362 128 HOH HOH . I 5 HOH B 63 363 154 HOH HOH . I 5 HOH B 64 364 27 HOH HOH . I 5 HOH B 65 365 45 HOH HOH . I 5 HOH B 66 366 57 HOH HOH . I 5 HOH B 67 367 63 HOH HOH . I 5 HOH B 68 368 66 HOH HOH . I 5 HOH B 69 369 52 HOH HOH . I 5 HOH B 70 370 44 HOH HOH . I 5 HOH B 71 371 180 HOH HOH . I 5 HOH B 72 372 5 HOH HOH . I 5 HOH B 73 373 1 HOH HOH . I 5 HOH B 74 374 114 HOH HOH . I 5 HOH B 75 375 26 HOH HOH . I 5 HOH B 76 376 41 HOH HOH . I 5 HOH B 77 377 73 HOH HOH . I 5 HOH B 78 378 186 HOH HOH . I 5 HOH B 79 379 179 HOH HOH . I 5 HOH B 80 380 95 HOH HOH . I 5 HOH B 81 381 97 HOH HOH . I 5 HOH B 82 382 68 HOH HOH . I 5 HOH B 83 383 132 HOH HOH . I 5 HOH B 84 384 136 HOH HOH . I 5 HOH B 85 385 145 HOH HOH . I 5 HOH B 86 386 185 HOH HOH . I 5 HOH B 87 387 99 HOH HOH . I 5 HOH B 88 388 109 HOH HOH . I 5 HOH B 89 389 129 HOH HOH . I 5 HOH B 90 390 147 HOH HOH . I 5 HOH B 91 391 85 HOH HOH . I 5 HOH B 92 392 133 HOH HOH . I 5 HOH B 93 393 106 HOH HOH . I 5 HOH B 94 394 169 HOH HOH . I 5 HOH B 95 395 176 HOH HOH . I 5 HOH B 96 396 190 HOH HOH . I 5 HOH B 97 397 155 HOH HOH . I 5 HOH B 98 398 40 HOH HOH . I 5 HOH B 99 399 153 HOH HOH . I 5 HOH B 100 400 146 HOH HOH . I 5 HOH B 101 401 175 HOH HOH . I 5 HOH B 102 402 9 HOH HOH . I 5 HOH B 103 403 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 10.067 19.368 -1.924 1 10 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . C 2 11.098 20.157 -1.57 1 10.41 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . C 2 11.961 20.463 -2.45 1 11.03 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . C 2 11.259 20.627 -0.307 1 10.07 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . C 2 10.429 20.333 0.713 1 10.13 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . C 2 10.616 20.765 1.858 1 10.75 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . C 2 9.275 19.491 0.391 1 9.3 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . C 2 8.383 19.154 1.329 1 9.74 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . C 2 7.356 18.345 0.999 1 9.02 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . C 2 6.443 17.952 1.961 1 9.34 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . C 2 5.38 17.119 1.687 1 9.35 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . C 2 4.444 16.693 2.776 1 10.42 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . C 2 5.195 16.657 0.327 1 9.01 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . C 2 4.063 15.741 -0.032 1 9.43 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . C 2 6.098 17.047 -0.645 1 9.42 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . C 2 7.185 17.856 -0.36 1 9.35 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . C 2 8.121 18.247 -1.329 1 8.83 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . C 2 9.175 19.047 -0.982 1 9.76 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . C 2 8.1 17.658 -2.656 1 9.42 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . C 2 7.385 18.391 -3.719 1 9.69 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . C 2 6.113 18.8 -3.214 1 10.47 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . C 2 7.163 17.493 -4.941 1 10.09 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . C 2 6.503 16.287 -4.551 1 11.54 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . C 2 8.458 17.104 -5.646 1 10.64 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . C 2 9.054 18.273 -6.171 1 11.91 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . C 2 8.313 16.057 -6.748 1 12.37 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . C 2 7.234 16.332 -7.607 1 12.94 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . C 2 7.423 17.219 -8.928 1 15.38 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . C 2 8.502 16.574 -9.814 1 15.52 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . C 2 6.05 17.106 -9.498 1 17.88 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . C 2 7.744 18.63 -8.45 1 14.57 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #