data_6YWL # _model_server_result.job_id j41rHrHGaI7V8mImhLnlRw _model_server_result.datetime_utc '2024-11-06 01:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":203}' # _entry.id 6YWL # _exptl.entry_id 6YWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YWL _cell.length_a 38.395 _cell.length_b 111.922 _cell.length_c 195.333 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,H,I,J,K,L,AA 1 1 B,M,N,O,BA 2 1 C,P,Q,R,S,CA 3 1 D,T,U,V,W,DA 4 1 E,X,Y,Z,EA 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OE1 GLU 121 C GLU 120 1_555 Q MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 C OE2 GLU 121 C GLU 120 1_555 Q MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 Y MG MG . E MG 202 1_555 EA O HOH . E HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.721 ? metalc ? metalc4 Y MG MG . E MG 202 1_555 EA O HOH . E HOH 307 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 6YWL _atom_sites.fract_transf_matrix[1][1] 0.026045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 APR A 1 201 201 APR APR . G 3 EDO A 1 202 5 EDO EDO . H 3 EDO A 1 203 6 EDO EDO . I 3 EDO A 1 204 7 EDO EDO . J 3 EDO A 1 205 8 EDO EDO . K 3 EDO A 1 206 9 EDO EDO . L 3 EDO A 1 207 14 EDO EDO . M 2 APR B 1 201 201 APR APR . N 3 EDO B 1 202 10 EDO EDO . O 3 EDO B 1 203 11 EDO EDO . P 2 APR C 1 201 201 APR APR . Q 4 MG C 1 202 1 MG MG . R 3 EDO C 1 203 12 EDO EDO . S 3 EDO C 1 204 13 EDO EDO . T 2 APR D 1 201 201 APR APR . U 3 EDO D 1 202 15 EDO EDO . V 3 EDO D 1 203 16 EDO EDO . W 3 EDO D 1 204 17 EDO EDO . X 2 APR E 1 201 201 APR APR . Y 4 MG E 1 202 2 MG MG . Z 3 EDO E 1 203 18 EDO EDO . AA 5 HOH A 1 301 160 HOH HOH . AA 5 HOH A 2 302 194 HOH HOH . AA 5 HOH A 3 303 60 HOH HOH . AA 5 HOH A 4 304 136 HOH HOH . AA 5 HOH A 5 305 165 HOH HOH . AA 5 HOH A 6 306 164 HOH HOH . AA 5 HOH A 7 307 158 HOH HOH . AA 5 HOH A 8 308 65 HOH HOH . AA 5 HOH A 9 309 159 HOH HOH . AA 5 HOH A 10 310 138 HOH HOH . AA 5 HOH A 11 311 187 HOH HOH . AA 5 HOH A 12 312 193 HOH HOH . AA 5 HOH A 13 313 62 HOH HOH . AA 5 HOH A 14 314 4 HOH HOH . AA 5 HOH A 15 315 49 HOH HOH . AA 5 HOH A 16 316 19 HOH HOH . AA 5 HOH A 17 317 190 HOH HOH . AA 5 HOH A 18 318 139 HOH HOH . AA 5 HOH A 19 319 90 HOH HOH . AA 5 HOH A 20 320 185 HOH HOH . AA 5 HOH A 21 321 137 HOH HOH . AA 5 HOH A 22 322 195 HOH HOH . AA 5 HOH A 23 323 179 HOH HOH . AA 5 HOH A 24 324 1 HOH HOH . AA 5 HOH A 25 325 177 HOH HOH . AA 5 HOH A 26 326 180 HOH HOH . AA 5 HOH A 27 327 134 HOH HOH . AA 5 HOH A 28 328 162 HOH HOH . AA 5 HOH A 29 329 7 HOH HOH . AA 5 HOH A 30 330 183 HOH HOH . AA 5 HOH A 31 331 178 HOH HOH . AA 5 HOH A 32 332 108 HOH HOH . AA 5 HOH A 33 333 189 HOH HOH . AA 5 HOH A 34 334 163 HOH HOH . AA 5 HOH A 35 335 169 HOH HOH . AA 5 HOH A 36 336 182 HOH HOH . AA 5 HOH A 37 337 140 HOH HOH . AA 5 HOH A 38 338 186 HOH HOH . AA 5 HOH A 39 339 167 HOH HOH . AA 5 HOH A 40 340 32 HOH HOH . AA 5 HOH A 41 341 170 HOH HOH . AA 5 HOH A 42 342 191 HOH HOH . AA 5 HOH A 43 343 197 HOH HOH . AA 5 HOH A 44 344 188 HOH HOH . AA 5 HOH A 45 345 161 HOH HOH . AA 5 HOH A 46 346 131 HOH HOH . AA 5 HOH A 47 347 196 HOH HOH . AA 5 HOH A 48 348 181 HOH HOH . AA 5 HOH A 49 349 129 HOH HOH . BA 5 HOH B 1 301 205 HOH HOH . BA 5 HOH B 2 302 47 HOH HOH . BA 5 HOH B 3 303 55 HOH HOH . BA 5 HOH B 4 304 79 HOH HOH . BA 5 HOH B 5 305 201 HOH HOH . BA 5 HOH B 6 306 206 HOH HOH . BA 5 HOH B 7 307 204 HOH HOH . BA 5 HOH B 8 308 41 HOH HOH . BA 5 HOH B 9 309 200 HOH HOH . BA 5 HOH B 10 310 70 HOH HOH . BA 5 HOH B 11 311 40 HOH HOH . BA 5 HOH B 12 312 207 HOH HOH . BA 5 HOH B 13 313 112 HOH HOH . BA 5 HOH B 14 314 141 HOH HOH . BA 5 HOH B 15 315 39 HOH HOH . BA 5 HOH B 16 316 94 HOH HOH . BA 5 HOH B 17 317 199 HOH HOH . BA 5 HOH B 18 318 133 HOH HOH . BA 5 HOH B 19 319 198 HOH HOH . BA 5 HOH B 20 320 2 HOH HOH . BA 5 HOH B 21 321 209 HOH HOH . CA 5 HOH C 1 301 227 HOH HOH . CA 5 HOH C 2 302 225 HOH HOH . CA 5 HOH C 3 303 22 HOH HOH . CA 5 HOH C 4 304 210 HOH HOH . CA 5 HOH C 5 305 216 HOH HOH . CA 5 HOH C 6 306 57 HOH HOH . CA 5 HOH C 7 307 44 HOH HOH . CA 5 HOH C 8 308 83 HOH HOH . CA 5 HOH C 9 309 219 HOH HOH . CA 5 HOH C 10 310 18 HOH HOH . CA 5 HOH C 11 311 211 HOH HOH . CA 5 HOH C 12 312 142 HOH HOH . CA 5 HOH C 13 313 144 HOH HOH . CA 5 HOH C 14 314 73 HOH HOH . CA 5 HOH C 15 315 228 HOH HOH . CA 5 HOH C 16 316 218 HOH HOH . CA 5 HOH C 17 317 53 HOH HOH . CA 5 HOH C 18 318 214 HOH HOH . CA 5 HOH C 19 319 98 HOH HOH . CA 5 HOH C 20 320 143 HOH HOH . CA 5 HOH C 21 321 249 HOH HOH . CA 5 HOH C 22 322 221 HOH HOH . CA 5 HOH C 23 323 52 HOH HOH . CA 5 HOH C 24 324 88 HOH HOH . CA 5 HOH C 25 325 107 HOH HOH . CA 5 HOH C 26 326 51 HOH HOH . CA 5 HOH C 27 327 43 HOH HOH . CA 5 HOH C 28 328 212 HOH HOH . CA 5 HOH C 29 329 215 HOH HOH . CA 5 HOH C 30 330 113 HOH HOH . CA 5 HOH C 31 331 226 HOH HOH . CA 5 HOH C 32 332 8 HOH HOH . CA 5 HOH C 33 333 77 HOH HOH . CA 5 HOH C 34 334 104 HOH HOH . CA 5 HOH C 35 335 127 HOH HOH . CA 5 HOH C 36 336 150 HOH HOH . CA 5 HOH C 37 337 5 HOH HOH . CA 5 HOH C 38 338 31 HOH HOH . CA 5 HOH C 39 339 12 HOH HOH . CA 5 HOH C 40 340 25 HOH HOH . CA 5 HOH C 41 341 213 HOH HOH . CA 5 HOH C 42 342 217 HOH HOH . CA 5 HOH C 43 343 9 HOH HOH . CA 5 HOH C 44 344 121 HOH HOH . DA 5 HOH D 1 301 149 HOH HOH . DA 5 HOH D 2 302 67 HOH HOH . DA 5 HOH D 3 303 147 HOH HOH . DA 5 HOH D 4 304 229 HOH HOH . DA 5 HOH D 5 305 235 HOH HOH . DA 5 HOH D 6 306 68 HOH HOH . DA 5 HOH D 7 307 116 HOH HOH . DA 5 HOH D 8 308 15 HOH HOH . DA 5 HOH D 9 309 236 HOH HOH . DA 5 HOH D 10 310 223 HOH HOH . DA 5 HOH D 11 311 237 HOH HOH . DA 5 HOH D 12 312 146 HOH HOH . DA 5 HOH D 13 313 166 HOH HOH . DA 5 HOH D 14 314 231 HOH HOH . DA 5 HOH D 15 315 148 HOH HOH . DA 5 HOH D 16 316 29 HOH HOH . DA 5 HOH D 17 317 33 HOH HOH . DA 5 HOH D 18 318 35 HOH HOH . DA 5 HOH D 19 319 184 HOH HOH . DA 5 HOH D 20 320 171 HOH HOH . DA 5 HOH D 21 321 36 HOH HOH . DA 5 HOH D 22 322 11 HOH HOH . DA 5 HOH D 23 323 172 HOH HOH . DA 5 HOH D 24 324 96 HOH HOH . DA 5 HOH D 25 325 59 HOH HOH . DA 5 HOH D 26 326 14 HOH HOH . DA 5 HOH D 27 327 154 HOH HOH . DA 5 HOH D 28 328 168 HOH HOH . DA 5 HOH D 29 329 80 HOH HOH . DA 5 HOH D 30 330 232 HOH HOH . DA 5 HOH D 31 331 233 HOH HOH . DA 5 HOH D 32 332 174 HOH HOH . DA 5 HOH D 33 333 6 HOH HOH . DA 5 HOH D 34 334 58 HOH HOH . DA 5 HOH D 35 335 37 HOH HOH . DA 5 HOH D 36 336 220 HOH HOH . DA 5 HOH D 37 337 230 HOH HOH . DA 5 HOH D 38 338 222 HOH HOH . DA 5 HOH D 39 339 173 HOH HOH . DA 5 HOH D 40 340 81 HOH HOH . DA 5 HOH D 41 341 192 HOH HOH . DA 5 HOH D 42 342 175 HOH HOH . DA 5 HOH D 43 343 234 HOH HOH . DA 5 HOH D 44 344 132 HOH HOH . EA 5 HOH E 1 301 157 HOH HOH . EA 5 HOH E 2 302 240 HOH HOH . EA 5 HOH E 3 303 82 HOH HOH . EA 5 HOH E 4 304 243 HOH HOH . EA 5 HOH E 5 305 30 HOH HOH . EA 5 HOH E 6 306 151 HOH HOH . EA 5 HOH E 7 307 156 HOH HOH . EA 5 HOH E 8 308 239 HOH HOH . EA 5 HOH E 9 309 115 HOH HOH . EA 5 HOH E 10 310 97 HOH HOH . EA 5 HOH E 11 311 246 HOH HOH . EA 5 HOH E 12 312 176 HOH HOH . EA 5 HOH E 13 313 66 HOH HOH . EA 5 HOH E 14 314 152 HOH HOH . EA 5 HOH E 15 315 245 HOH HOH . EA 5 HOH E 16 316 63 HOH HOH . EA 5 HOH E 17 317 224 HOH HOH . EA 5 HOH E 18 318 203 HOH HOH . EA 5 HOH E 19 319 74 HOH HOH . EA 5 HOH E 20 320 64 HOH HOH . EA 5 HOH E 21 321 241 HOH HOH . EA 5 HOH E 22 322 155 HOH HOH . EA 5 HOH E 23 323 13 HOH HOH . EA 5 HOH E 24 324 100 HOH HOH . EA 5 HOH E 25 325 75 HOH HOH . EA 5 HOH E 26 326 238 HOH HOH . EA 5 HOH E 27 327 153 HOH HOH . EA 5 HOH E 28 328 247 HOH HOH . EA 5 HOH E 29 329 248 HOH HOH . EA 5 HOH E 30 330 242 HOH HOH . EA 5 HOH E 31 331 244 HOH HOH . EA 5 HOH E 32 332 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . V 3 33.299 59.982 25.885 1 44.2 ? C1 EDO 203 D 1 HETATM 2 O O1 EDO . . . V 3 33.65 58.761 25.247 1 48.54 ? O1 EDO 203 D 1 HETATM 3 C C2 EDO . . . V 3 31.837 60.087 26.15 1 41.63 ? C2 EDO 203 D 1 HETATM 4 O O2 EDO . . . V 3 31.252 61.319 25.726 1 37.87 ? O2 EDO 203 D 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #