data_6YWM # _model_server_result.job_id CjvbFzUNpY0og9wckYyiQQ _model_server_result.datetime_utc '2024-11-21 08:48:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6YWM # _exptl.entry_id 6YWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YWM _cell.length_a 37.8 _cell.length_b 109.051 _cell.length_c 114.358 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,T 1 1 B,J,K,L,M,U 2 1 C,N,O,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 163 A ASP 162 1_555 O MG MG . C MG 202 2_354 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 J MG MG . B MG 201 1_555 U O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 J MG MG . B MG 201 1_555 U O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 C OD2 ASP 158 C ASP 157 1_555 O MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 O MG MG . C MG 202 1_555 P O2 EDO . C EDO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 O MG MG . C MG 202 1_555 V O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6YWM _atom_sites.fract_transf_matrix[1][1] 0.026455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MES A 1 201 201 MES MES . E 3 EDO A 1 202 6 EDO EDO . F 3 EDO A 1 203 7 EDO EDO . G 3 EDO A 1 204 8 EDO EDO . H 3 EDO A 1 205 9 EDO EDO . I 3 EDO A 1 206 10 EDO EDO . J 4 MG B 1 201 1 MG MG . K 3 EDO B 1 202 15 EDO EDO . L 3 EDO B 1 203 16 EDO EDO . M 3 EDO B 1 204 17 EDO EDO . N 2 MES C 1 201 201 MES MES . O 4 MG C 1 202 2 MG MG . P 3 EDO C 1 203 5 EDO EDO . Q 3 EDO C 1 204 11 EDO EDO . R 3 EDO C 1 205 12 EDO EDO . S 3 EDO C 1 206 13 EDO EDO . T 5 HOH A 1 301 232 HOH HOH . T 5 HOH A 2 302 247 HOH HOH . T 5 HOH A 3 303 233 HOH HOH . T 5 HOH A 4 304 248 HOH HOH . T 5 HOH A 5 305 150 HOH HOH . T 5 HOH A 6 306 162 HOH HOH . T 5 HOH A 7 307 168 HOH HOH . T 5 HOH A 8 308 239 HOH HOH . T 5 HOH A 9 309 246 HOH HOH . T 5 HOH A 10 310 62 HOH HOH . T 5 HOH A 11 311 237 HOH HOH . T 5 HOH A 12 312 197 HOH HOH . T 5 HOH A 13 313 19 HOH HOH . T 5 HOH A 14 314 180 HOH HOH . T 5 HOH A 15 315 32 HOH HOH . T 5 HOH A 16 316 67 HOH HOH . T 5 HOH A 17 317 164 HOH HOH . T 5 HOH A 18 318 98 HOH HOH . T 5 HOH A 19 319 72 HOH HOH . T 5 HOH A 20 320 166 HOH HOH . T 5 HOH A 21 321 10 HOH HOH . T 5 HOH A 22 322 153 HOH HOH . T 5 HOH A 23 323 140 HOH HOH . T 5 HOH A 24 324 101 HOH HOH . T 5 HOH A 25 325 70 HOH HOH . T 5 HOH A 26 326 85 HOH HOH . T 5 HOH A 27 327 20 HOH HOH . T 5 HOH A 28 328 156 HOH HOH . T 5 HOH A 29 329 33 HOH HOH . T 5 HOH A 30 330 90 HOH HOH . T 5 HOH A 31 331 47 HOH HOH . T 5 HOH A 32 332 100 HOH HOH . T 5 HOH A 33 333 52 HOH HOH . T 5 HOH A 34 334 103 HOH HOH . T 5 HOH A 35 335 214 HOH HOH . T 5 HOH A 36 336 240 HOH HOH . T 5 HOH A 37 337 141 HOH HOH . T 5 HOH A 38 338 116 HOH HOH . T 5 HOH A 39 339 56 HOH HOH . T 5 HOH A 40 340 75 HOH HOH . T 5 HOH A 41 341 18 HOH HOH . T 5 HOH A 42 342 50 HOH HOH . T 5 HOH A 43 343 206 HOH HOH . T 5 HOH A 44 344 94 HOH HOH . T 5 HOH A 45 345 68 HOH HOH . T 5 HOH A 46 346 82 HOH HOH . T 5 HOH A 47 347 152 HOH HOH . T 5 HOH A 48 348 39 HOH HOH . T 5 HOH A 49 349 8 HOH HOH . T 5 HOH A 50 350 25 HOH HOH . T 5 HOH A 51 351 87 HOH HOH . T 5 HOH A 52 352 45 HOH HOH . T 5 HOH A 53 353 13 HOH HOH . T 5 HOH A 54 354 29 HOH HOH . T 5 HOH A 55 355 250 HOH HOH . T 5 HOH A 56 356 84 HOH HOH . T 5 HOH A 57 357 7 HOH HOH . T 5 HOH A 58 358 54 HOH HOH . T 5 HOH A 59 359 60 HOH HOH . T 5 HOH A 60 360 81 HOH HOH . T 5 HOH A 61 361 274 HOH HOH . T 5 HOH A 62 362 111 HOH HOH . T 5 HOH A 63 363 142 HOH HOH . T 5 HOH A 64 364 236 HOH HOH . T 5 HOH A 65 365 83 HOH HOH . T 5 HOH A 66 366 16 HOH HOH . T 5 HOH A 67 367 122 HOH HOH . T 5 HOH A 68 368 105 HOH HOH . T 5 HOH A 69 369 11 HOH HOH . T 5 HOH A 70 370 28 HOH HOH . T 5 HOH A 71 371 219 HOH HOH . T 5 HOH A 72 372 179 HOH HOH . T 5 HOH A 73 373 114 HOH HOH . T 5 HOH A 74 374 167 HOH HOH . T 5 HOH A 75 375 99 HOH HOH . T 5 HOH A 76 376 69 HOH HOH . T 5 HOH A 77 377 207 HOH HOH . T 5 HOH A 78 378 151 HOH HOH . T 5 HOH A 79 379 234 HOH HOH . T 5 HOH A 80 380 249 HOH HOH . T 5 HOH A 81 381 157 HOH HOH . T 5 HOH A 82 382 148 HOH HOH . T 5 HOH A 83 383 112 HOH HOH . T 5 HOH A 84 384 91 HOH HOH . T 5 HOH A 85 385 169 HOH HOH . T 5 HOH A 86 386 235 HOH HOH . T 5 HOH A 87 387 271 HOH HOH . T 5 HOH A 88 388 173 HOH HOH . T 5 HOH A 89 389 216 HOH HOH . T 5 HOH A 90 390 230 HOH HOH . T 5 HOH A 91 391 175 HOH HOH . T 5 HOH A 92 392 228 HOH HOH . U 5 HOH B 1 301 259 HOH HOH . U 5 HOH B 2 302 63 HOH HOH . U 5 HOH B 3 303 96 HOH HOH . U 5 HOH B 4 304 158 HOH HOH . U 5 HOH B 5 305 121 HOH HOH . U 5 HOH B 6 306 46 HOH HOH . U 5 HOH B 7 307 224 HOH HOH . U 5 HOH B 8 308 212 HOH HOH . U 5 HOH B 9 309 172 HOH HOH . U 5 HOH B 10 310 254 HOH HOH . U 5 HOH B 11 311 36 HOH HOH . U 5 HOH B 12 312 2 HOH HOH . U 5 HOH B 13 313 165 HOH HOH . U 5 HOH B 14 314 257 HOH HOH . U 5 HOH B 15 315 178 HOH HOH . U 5 HOH B 16 316 109 HOH HOH . U 5 HOH B 17 317 132 HOH HOH . U 5 HOH B 18 318 34 HOH HOH . U 5 HOH B 19 319 213 HOH HOH . U 5 HOH B 20 320 134 HOH HOH . U 5 HOH B 21 321 106 HOH HOH . U 5 HOH B 22 322 130 HOH HOH . U 5 HOH B 23 323 200 HOH HOH . U 5 HOH B 24 324 211 HOH HOH . U 5 HOH B 25 325 1 HOH HOH . U 5 HOH B 26 326 251 HOH HOH . U 5 HOH B 27 327 261 HOH HOH . U 5 HOH B 28 328 255 HOH HOH . U 5 HOH B 29 329 30 HOH HOH . U 5 HOH B 30 330 97 HOH HOH . U 5 HOH B 31 331 79 HOH HOH . U 5 HOH B 32 332 260 HOH HOH . U 5 HOH B 33 333 108 HOH HOH . U 5 HOH B 34 334 21 HOH HOH . U 5 HOH B 35 335 256 HOH HOH . U 5 HOH B 36 336 89 HOH HOH . U 5 HOH B 37 337 174 HOH HOH . U 5 HOH B 38 338 42 HOH HOH . U 5 HOH B 39 339 143 HOH HOH . U 5 HOH B 40 340 138 HOH HOH . U 5 HOH B 41 341 155 HOH HOH . U 5 HOH B 42 342 147 HOH HOH . U 5 HOH B 43 343 12 HOH HOH . U 5 HOH B 44 344 26 HOH HOH . U 5 HOH B 45 345 253 HOH HOH . U 5 HOH B 46 346 71 HOH HOH . U 5 HOH B 47 347 77 HOH HOH . U 5 HOH B 48 348 15 HOH HOH . U 5 HOH B 49 349 117 HOH HOH . U 5 HOH B 50 350 61 HOH HOH . U 5 HOH B 51 351 93 HOH HOH . U 5 HOH B 52 352 264 HOH HOH . U 5 HOH B 53 353 57 HOH HOH . U 5 HOH B 54 354 17 HOH HOH . U 5 HOH B 55 355 120 HOH HOH . U 5 HOH B 56 356 66 HOH HOH . U 5 HOH B 57 357 43 HOH HOH . U 5 HOH B 58 358 263 HOH HOH . U 5 HOH B 59 359 37 HOH HOH . U 5 HOH B 60 360 9 HOH HOH . U 5 HOH B 61 361 221 HOH HOH . U 5 HOH B 62 362 128 HOH HOH . U 5 HOH B 63 363 187 HOH HOH . U 5 HOH B 64 364 118 HOH HOH . U 5 HOH B 65 365 265 HOH HOH . U 5 HOH B 66 366 262 HOH HOH . U 5 HOH B 67 367 218 HOH HOH . U 5 HOH B 68 368 252 HOH HOH . U 5 HOH B 69 369 139 HOH HOH . U 5 HOH B 70 370 131 HOH HOH . U 5 HOH B 71 371 222 HOH HOH . U 5 HOH B 72 372 144 HOH HOH . U 5 HOH B 73 373 198 HOH HOH . U 5 HOH B 74 374 225 HOH HOH . V 5 HOH C 1 301 176 HOH HOH . V 5 HOH C 2 302 266 HOH HOH . V 5 HOH C 3 303 38 HOH HOH . V 5 HOH C 4 304 272 HOH HOH . V 5 HOH C 5 305 31 HOH HOH . V 5 HOH C 6 306 4 HOH HOH . V 5 HOH C 7 307 41 HOH HOH . V 5 HOH C 8 308 104 HOH HOH . V 5 HOH C 9 309 133 HOH HOH . V 5 HOH C 10 310 55 HOH HOH . V 5 HOH C 11 311 129 HOH HOH . V 5 HOH C 12 312 183 HOH HOH . V 5 HOH C 13 313 64 HOH HOH . V 5 HOH C 14 314 188 HOH HOH . V 5 HOH C 15 315 192 HOH HOH . V 5 HOH C 16 316 160 HOH HOH . V 5 HOH C 17 317 23 HOH HOH . V 5 HOH C 18 318 74 HOH HOH . V 5 HOH C 19 319 124 HOH HOH . V 5 HOH C 20 320 14 HOH HOH . V 5 HOH C 21 321 80 HOH HOH . V 5 HOH C 22 322 51 HOH HOH . V 5 HOH C 23 323 146 HOH HOH . V 5 HOH C 24 324 270 HOH HOH . V 5 HOH C 25 325 190 HOH HOH . V 5 HOH C 26 326 65 HOH HOH . V 5 HOH C 27 327 113 HOH HOH . V 5 HOH C 28 328 92 HOH HOH . V 5 HOH C 29 329 110 HOH HOH . V 5 HOH C 30 330 119 HOH HOH . V 5 HOH C 31 331 136 HOH HOH . V 5 HOH C 32 332 220 HOH HOH . V 5 HOH C 33 333 35 HOH HOH . V 5 HOH C 34 334 267 HOH HOH . V 5 HOH C 35 335 78 HOH HOH . V 5 HOH C 36 336 48 HOH HOH . V 5 HOH C 37 337 115 HOH HOH . V 5 HOH C 38 338 27 HOH HOH . V 5 HOH C 39 339 182 HOH HOH . V 5 HOH C 40 340 195 HOH HOH . V 5 HOH C 41 341 86 HOH HOH . V 5 HOH C 42 342 6 HOH HOH . V 5 HOH C 43 343 171 HOH HOH . V 5 HOH C 44 344 76 HOH HOH . V 5 HOH C 45 345 40 HOH HOH . V 5 HOH C 46 346 88 HOH HOH . V 5 HOH C 47 347 44 HOH HOH . V 5 HOH C 48 348 194 HOH HOH . V 5 HOH C 49 349 22 HOH HOH . V 5 HOH C 50 350 184 HOH HOH . V 5 HOH C 51 351 5 HOH HOH . V 5 HOH C 52 352 49 HOH HOH . V 5 HOH C 53 353 245 HOH HOH . V 5 HOH C 54 354 95 HOH HOH . V 5 HOH C 55 355 102 HOH HOH . V 5 HOH C 56 356 73 HOH HOH . V 5 HOH C 57 357 53 HOH HOH . V 5 HOH C 58 358 127 HOH HOH . V 5 HOH C 59 359 24 HOH HOH . V 5 HOH C 60 360 242 HOH HOH . V 5 HOH C 61 361 244 HOH HOH . V 5 HOH C 62 362 58 HOH HOH . V 5 HOH C 63 363 269 HOH HOH . V 5 HOH C 64 364 243 HOH HOH . V 5 HOH C 65 365 273 HOH HOH . V 5 HOH C 66 366 268 HOH HOH . V 5 HOH C 67 367 126 HOH HOH . V 5 HOH C 68 368 59 HOH HOH . V 5 HOH C 69 369 145 HOH HOH . V 5 HOH C 70 370 107 HOH HOH . V 5 HOH C 71 371 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -16.438 8.077 2.101 1 52.34 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . E 3 -16.916 7.298 1.029 1 48.42 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . E 3 -17.173 7.791 3.306 1 49.96 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . E 3 -18.521 7.522 3.02 1 48.05 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #