data_6YWR # _model_server_result.job_id ONFnhy-_u4kyDavRTNet9A _model_server_result.datetime_utc '2024-10-10 02:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ywr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6YWR # _exptl.entry_id 6YWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 6YWR _cell.length_a 110.967 _cell.length_b 54.035 _cell.length_c 39.229 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6YWR _atom_sites.fract_transf_matrix[1][1] 0.009012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 201 1 FMN FMN . D 3 SO4 B 1 202 1 SO4 SO4 . E 3 SO4 B 1 203 1 SO4 SO4 . F 2 FMN A 1 201 2 FMN FMN . G 3 SO4 A 1 202 1 SO4 SO4 . H 3 SO4 A 1 203 1 SO4 SO4 . I 4 HOH B 1 301 101 HOH HOH . I 4 HOH B 2 302 133 HOH HOH . I 4 HOH B 3 303 174 HOH HOH . I 4 HOH B 4 304 89 HOH HOH . I 4 HOH B 5 305 107 HOH HOH . I 4 HOH B 6 306 22 HOH HOH . I 4 HOH B 7 307 35 HOH HOH . I 4 HOH B 8 308 74 HOH HOH . I 4 HOH B 9 309 47 HOH HOH . I 4 HOH B 10 310 34 HOH HOH . I 4 HOH B 11 311 136 HOH HOH . I 4 HOH B 12 312 57 HOH HOH . I 4 HOH B 13 313 129 HOH HOH . I 4 HOH B 14 314 17 HOH HOH . I 4 HOH B 15 315 152 HOH HOH . I 4 HOH B 16 316 59 HOH HOH . I 4 HOH B 17 317 37 HOH HOH . I 4 HOH B 18 318 94 HOH HOH . I 4 HOH B 19 319 142 HOH HOH . I 4 HOH B 20 320 13 HOH HOH . I 4 HOH B 21 321 172 HOH HOH . I 4 HOH B 22 322 50 HOH HOH . I 4 HOH B 23 323 16 HOH HOH . I 4 HOH B 24 324 6 HOH HOH . I 4 HOH B 25 325 132 HOH HOH . I 4 HOH B 26 326 30 HOH HOH . I 4 HOH B 27 327 130 HOH HOH . I 4 HOH B 28 328 31 HOH HOH . I 4 HOH B 29 329 145 HOH HOH . I 4 HOH B 30 330 155 HOH HOH . I 4 HOH B 31 331 143 HOH HOH . I 4 HOH B 32 332 72 HOH HOH . I 4 HOH B 33 333 88 HOH HOH . I 4 HOH B 34 334 5 HOH HOH . I 4 HOH B 35 335 75 HOH HOH . I 4 HOH B 36 336 73 HOH HOH . I 4 HOH B 37 337 138 HOH HOH . I 4 HOH B 38 338 97 HOH HOH . I 4 HOH B 39 339 76 HOH HOH . I 4 HOH B 40 340 2 HOH HOH . I 4 HOH B 41 341 123 HOH HOH . I 4 HOH B 42 342 165 HOH HOH . I 4 HOH B 43 343 8 HOH HOH . I 4 HOH B 44 344 48 HOH HOH . I 4 HOH B 45 345 12 HOH HOH . I 4 HOH B 46 346 98 HOH HOH . I 4 HOH B 47 347 146 HOH HOH . I 4 HOH B 48 348 96 HOH HOH . I 4 HOH B 49 349 58 HOH HOH . I 4 HOH B 50 350 46 HOH HOH . I 4 HOH B 51 351 39 HOH HOH . I 4 HOH B 52 352 21 HOH HOH . I 4 HOH B 53 353 68 HOH HOH . I 4 HOH B 54 354 44 HOH HOH . I 4 HOH B 55 355 171 HOH HOH . I 4 HOH B 56 356 51 HOH HOH . I 4 HOH B 57 357 134 HOH HOH . I 4 HOH B 58 358 170 HOH HOH . I 4 HOH B 59 359 100 HOH HOH . I 4 HOH B 60 360 53 HOH HOH . I 4 HOH B 61 361 137 HOH HOH . I 4 HOH B 62 362 36 HOH HOH . I 4 HOH B 63 363 151 HOH HOH . I 4 HOH B 64 364 41 HOH HOH . I 4 HOH B 65 365 4 HOH HOH . I 4 HOH B 66 366 118 HOH HOH . I 4 HOH B 67 367 56 HOH HOH . I 4 HOH B 68 368 116 HOH HOH . I 4 HOH B 69 369 84 HOH HOH . I 4 HOH B 70 370 29 HOH HOH . I 4 HOH B 71 371 168 HOH HOH . I 4 HOH B 72 372 18 HOH HOH . I 4 HOH B 73 373 38 HOH HOH . I 4 HOH B 74 374 157 HOH HOH . I 4 HOH B 75 375 99 HOH HOH . I 4 HOH B 76 376 121 HOH HOH . I 4 HOH B 77 377 117 HOH HOH . I 4 HOH B 78 378 83 HOH HOH . I 4 HOH B 79 379 156 HOH HOH . I 4 HOH B 80 380 80 HOH HOH . I 4 HOH B 81 381 1 HOH HOH . I 4 HOH B 82 382 154 HOH HOH . I 4 HOH B 83 383 141 HOH HOH . I 4 HOH B 84 384 77 HOH HOH . I 4 HOH B 85 385 55 HOH HOH . I 4 HOH B 86 386 126 HOH HOH . I 4 HOH B 87 387 106 HOH HOH . I 4 HOH B 88 388 139 HOH HOH . I 4 HOH B 89 389 131 HOH HOH . I 4 HOH B 90 390 169 HOH HOH . I 4 HOH B 91 391 93 HOH HOH . I 4 HOH B 92 392 148 HOH HOH . I 4 HOH B 93 393 115 HOH HOH . I 4 HOH B 94 394 128 HOH HOH . I 4 HOH B 95 395 69 HOH HOH . I 4 HOH B 96 396 166 HOH HOH . I 4 HOH B 97 397 147 HOH HOH . J 4 HOH A 1 301 104 HOH HOH . J 4 HOH A 2 302 95 HOH HOH . J 4 HOH A 3 303 64 HOH HOH . J 4 HOH A 4 304 167 HOH HOH . J 4 HOH A 5 305 135 HOH HOH . J 4 HOH A 6 306 122 HOH HOH . J 4 HOH A 7 307 11 HOH HOH . J 4 HOH A 8 308 24 HOH HOH . J 4 HOH A 9 309 110 HOH HOH . J 4 HOH A 10 310 162 HOH HOH . J 4 HOH A 11 311 14 HOH HOH . J 4 HOH A 12 312 20 HOH HOH . J 4 HOH A 13 313 70 HOH HOH . J 4 HOH A 14 314 60 HOH HOH . J 4 HOH A 15 315 144 HOH HOH . J 4 HOH A 16 316 19 HOH HOH . J 4 HOH A 17 317 150 HOH HOH . J 4 HOH A 18 318 65 HOH HOH . J 4 HOH A 19 319 91 HOH HOH . J 4 HOH A 20 320 114 HOH HOH . J 4 HOH A 21 321 45 HOH HOH . J 4 HOH A 22 322 32 HOH HOH . J 4 HOH A 23 323 26 HOH HOH . J 4 HOH A 24 324 40 HOH HOH . J 4 HOH A 25 325 108 HOH HOH . J 4 HOH A 26 326 173 HOH HOH . J 4 HOH A 27 327 23 HOH HOH . J 4 HOH A 28 328 79 HOH HOH . J 4 HOH A 29 329 15 HOH HOH . J 4 HOH A 30 330 7 HOH HOH . J 4 HOH A 31 331 25 HOH HOH . J 4 HOH A 32 332 10 HOH HOH . J 4 HOH A 33 333 61 HOH HOH . J 4 HOH A 34 334 42 HOH HOH . J 4 HOH A 35 335 119 HOH HOH . J 4 HOH A 36 336 28 HOH HOH . J 4 HOH A 37 337 86 HOH HOH . J 4 HOH A 38 338 71 HOH HOH . J 4 HOH A 39 339 102 HOH HOH . J 4 HOH A 40 340 112 HOH HOH . J 4 HOH A 41 341 27 HOH HOH . J 4 HOH A 42 342 81 HOH HOH . J 4 HOH A 43 343 111 HOH HOH . J 4 HOH A 44 344 149 HOH HOH . J 4 HOH A 45 345 62 HOH HOH . J 4 HOH A 46 346 127 HOH HOH . J 4 HOH A 47 347 140 HOH HOH . J 4 HOH A 48 348 113 HOH HOH . J 4 HOH A 49 349 43 HOH HOH . J 4 HOH A 50 350 3 HOH HOH . J 4 HOH A 51 351 159 HOH HOH . J 4 HOH A 52 352 87 HOH HOH . J 4 HOH A 53 353 82 HOH HOH . J 4 HOH A 54 354 63 HOH HOH . J 4 HOH A 55 355 92 HOH HOH . J 4 HOH A 56 356 161 HOH HOH . J 4 HOH A 57 357 105 HOH HOH . J 4 HOH A 58 358 54 HOH HOH . J 4 HOH A 59 359 85 HOH HOH . J 4 HOH A 60 360 9 HOH HOH . J 4 HOH A 61 361 78 HOH HOH . J 4 HOH A 62 362 52 HOH HOH . J 4 HOH A 63 363 90 HOH HOH . J 4 HOH A 64 364 49 HOH HOH . J 4 HOH A 65 365 33 HOH HOH . J 4 HOH A 66 366 120 HOH HOH . J 4 HOH A 67 367 153 HOH HOH . J 4 HOH A 68 368 164 HOH HOH . J 4 HOH A 69 369 109 HOH HOH . J 4 HOH A 70 370 163 HOH HOH . J 4 HOH A 71 371 158 HOH HOH . J 4 HOH A 72 372 103 HOH HOH . J 4 HOH A 73 373 67 HOH HOH . J 4 HOH A 74 374 124 HOH HOH . J 4 HOH A 75 375 66 HOH HOH . J 4 HOH A 76 376 160 HOH HOH . J 4 HOH A 77 377 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 16.582 1.28 20.178 1 9.51 ? N1 FMN 201 B 1 HETATM 2 C C2 FMN . . . C 2 17.451 2.297 19.954 1 12.65 ? C2 FMN 201 B 1 HETATM 3 O O2 FMN . . . C 2 17.608 3.108 20.896 1 11.76 ? O2 FMN 201 B 1 HETATM 4 N N3 FMN . . . C 2 18.12 2.466 18.791 1 10.14 ? N3 FMN 201 B 1 HETATM 5 C C4 FMN . . . C 2 17.958 1.638 17.734 1 11.09 ? C4 FMN 201 B 1 HETATM 6 O O4 FMN . . . C 2 18.58 1.771 16.65 1 12.15 ? O4 FMN 201 B 1 HETATM 7 C C4A FMN . . . C 2 17.044 0.501 17.909 1 9.45 ? C4A FMN 201 B 1 HETATM 8 N N5 FMN . . . C 2 16.832 -0.379 16.909 1 9.6 ? N5 FMN 201 B 1 HETATM 9 C C5A FMN . . . C 2 15.953 -1.413 17.083 1 10 ? C5A FMN 201 B 1 HETATM 10 C C6 FMN . . . C 2 15.744 -2.317 16.04 1 9.12 ? C6 FMN 201 B 1 HETATM 11 C C7 FMN . . . C 2 14.873 -3.382 16.192 1 10.12 ? C7 FMN 201 B 1 HETATM 12 C C7M FMN . . . C 2 14.634 -4.333 15.045 1 9.94 ? C7M FMN 201 B 1 HETATM 13 C C8 FMN . . . C 2 14.157 -3.546 17.482 1 8.2 ? C8 FMN 201 B 1 HETATM 14 C C8M FMN . . . C 2 13.184 -4.676 17.681 1 9.75 ? C8M FMN 201 B 1 HETATM 15 C C9 FMN . . . C 2 14.373 -2.646 18.511 1 9.94 ? C9 FMN 201 B 1 HETATM 16 C C9A FMN . . . C 2 15.251 -1.585 18.367 1 9.77 ? C9A FMN 201 B 1 HETATM 17 N N10 FMN . . . C 2 15.469 -0.67 19.421 1 10.14 ? N10 FMN 201 B 1 HETATM 18 C C10 FMN . . . C 2 16.349 0.387 19.202 1 10.44 ? C10 FMN 201 B 1 HETATM 19 C C1' FMN . . . C 2 14.727 -0.725 20.693 1 9.44 ? C1' FMN 201 B 1 HETATM 20 C C2' FMN . . . C 2 15.313 -1.494 21.842 1 10.07 ? C2' FMN 201 B 1 HETATM 21 O O2' FMN . . . C 2 15.878 -2.713 21.329 1 10.93 ? O2' FMN 201 B 1 HETATM 22 C C3' FMN . . . C 2 14.205 -1.806 22.873 1 11.55 ? C3' FMN 201 B 1 HETATM 23 O O3' FMN . . . C 2 13.103 -2.414 22.179 1 13.4 ? O3' FMN 201 B 1 HETATM 24 C C4' FMN . . . C 2 13.616 -0.626 23.672 1 14.56 ? C4' FMN 201 B 1 HETATM 25 O O4' FMN . . . C 2 14.691 0.179 24.173 1 13.2 ? O4' FMN 201 B 1 HETATM 26 C C5' FMN . . . C 2 12.686 -1.139 24.831 1 15.68 ? C5' FMN 201 B 1 HETATM 27 O O5' FMN . . . C 2 13.279 -1.473 26.13 1 21.32 ? O5' FMN 201 B 1 HETATM 28 P P FMN . . . C 2 12.545 -1.035 27.529 0.5 25.46 ? P FMN 201 B 1 HETATM 29 O O1P FMN . . . C 2 11.584 -2.191 27.69 0.5 33.84 ? O1P FMN 201 B 1 HETATM 30 O O2P FMN . . . C 2 13.468 -0.919 28.745 0.5 19.51 ? O2P FMN 201 B 1 HETATM 31 O O3P FMN . . . C 2 11.903 0.274 27.163 0.5 30.87 ? O3P FMN 201 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #