data_6YWZ
#
_model_server_result.job_id            LbShQZJ7OWeFCpygqCbyQQ 
_model_server_result.datetime_utc      '2024-11-05 01:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ywz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6YWZ 
#
_exptl.entry_id    6YWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[(~{E})-(4-oxidanylidenebutanoylhydrazinylidene)methyl]benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YWZ 
_cell.length_a            44.566 
_cell.length_b            65.973 
_cell.length_c            86.904 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C14 PWN . B PWN 802 1_555 E N THR . B THR 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 H C14 PWN . A PWN 801 1_555 I N THR . A THR 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C12 H12 N2 O4' 
_chem_comp.formula_weight    248.235 
_chem_comp.id                PWN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[(~{E})-(4-oxidanylidenebutanoylhydrazinylidene)methyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C14 PWN doub 280 n n 
C14 C15 PWN sing 281 n n 
C15 C16 PWN sing 282 n n 
C16 C17 PWN sing 283 n n 
C17 N7 PWN sing 284 n n 
C17 O4 PWN doub 285 n n 
N7 N8 PWN sing 286 n n 
O6 C25 PWN doub 287 n n 
O5 C25 PWN sing 288 n n 
N8 C18 PWN doub 289 e n 
C18 C19 PWN sing 290 n n 
C25 C24 PWN sing 291 n n 
C19 C24 PWN doub 292 n y 
C19 C20 PWN sing 293 n y 
C24 C23 PWN sing 294 n y 
C20 C21 PWN doub 295 n y 
C23 C22 PWN doub 296 n y 
C21 C22 PWN sing 297 n y 
C14 H1 PWN sing 298 n n 
C15 H2 PWN sing 299 n n 
C15 H3 PWN sing 300 n n 
C16 H4 PWN sing 301 n n 
C16 H5 PWN sing 302 n n 
C18 H6 PWN sing 303 n n 
O5 H7 PWN sing 304 n n 
C20 H8 PWN sing 305 n n 
C21 H9 PWN sing 306 n n 
C22 H10 PWN sing 307 n n 
C23 H11 PWN sing 308 n n 
N7 H12 PWN sing 309 n n 
#
_atom_sites.entry_id                     6YWZ 
_atom_sites.fract_transf_matrix[1][1]    0.022439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG B 1 801 101 PEG PEG . 
D 3 PWN B 1 802 1 PWN Z36 . 
E 4 THR B 1 803 1 THR Z36 . 
F 5 ARG B 1 804 1 ARG Z36 . 
G 6 LEU B 1 805 1 LEU Z36 . 
H 3 PWN A 1 801 1 PWN Z36 . 
I 4 THR A 1 802 1 THR Z36 . 
J 5 ARG A 1 803 1 ARG Z36 . 
K 6 LEU A 1 804 1 LEU Z36 . 
L 7 HOH B 1 901 14 HOH HOH . 
L 7 HOH B 2 902 55 HOH HOH . 
L 7 HOH B 3 903 27 HOH HOH . 
L 7 HOH B 4 904 76 HOH HOH . 
L 7 HOH B 5 905 36 HOH HOH . 
L 7 HOH B 6 906 40 HOH HOH . 
L 7 HOH B 7 907 35 HOH HOH . 
L 7 HOH B 8 908 13 HOH HOH . 
L 7 HOH B 9 909 8 HOH HOH . 
L 7 HOH B 10 910 26 HOH HOH . 
L 7 HOH B 11 911 20 HOH HOH . 
L 7 HOH B 12 912 12 HOH HOH . 
L 7 HOH B 13 913 39 HOH HOH . 
L 7 HOH B 14 914 41 HOH HOH . 
L 7 HOH B 15 915 71 HOH HOH . 
L 7 HOH B 16 916 18 HOH HOH . 
L 7 HOH B 17 917 69 HOH HOH . 
L 7 HOH B 18 918 31 HOH HOH . 
L 7 HOH B 19 919 24 HOH HOH . 
L 7 HOH B 20 920 6 HOH HOH . 
L 7 HOH B 21 921 11 HOH HOH . 
L 7 HOH B 22 922 68 HOH HOH . 
L 7 HOH B 23 923 54 HOH HOH . 
L 7 HOH B 24 924 30 HOH HOH . 
L 7 HOH B 25 925 47 HOH HOH . 
L 7 HOH B 26 926 1 HOH HOH . 
L 7 HOH B 27 927 59 HOH HOH . 
L 7 HOH B 28 928 49 HOH HOH . 
L 7 HOH B 29 929 70 HOH HOH . 
L 7 HOH B 30 930 23 HOH HOH . 
L 7 HOH B 31 931 74 HOH HOH . 
L 7 HOH B 32 932 56 HOH HOH . 
L 7 HOH B 33 933 73 HOH HOH . 
L 7 HOH B 34 934 61 HOH HOH . 
L 7 HOH B 35 935 44 HOH HOH . 
L 7 HOH B 36 936 45 HOH HOH . 
M 7 HOH A 1 901 66 HOH HOH . 
M 7 HOH A 2 902 64 HOH HOH . 
M 7 HOH A 3 903 63 HOH HOH . 
M 7 HOH A 4 904 4 HOH HOH . 
M 7 HOH A 5 905 38 HOH HOH . 
M 7 HOH A 6 906 34 HOH HOH . 
M 7 HOH A 7 907 42 HOH HOH . 
M 7 HOH A 8 908 9 HOH HOH . 
M 7 HOH A 9 909 28 HOH HOH . 
M 7 HOH A 10 910 29 HOH HOH . 
M 7 HOH A 11 911 17 HOH HOH . 
M 7 HOH A 12 912 33 HOH HOH . 
M 7 HOH A 13 913 5 HOH HOH . 
M 7 HOH A 14 914 43 HOH HOH . 
M 7 HOH A 15 915 37 HOH HOH . 
M 7 HOH A 16 916 77 HOH HOH . 
M 7 HOH A 17 917 10 HOH HOH . 
M 7 HOH A 18 918 7 HOH HOH . 
M 7 HOH A 19 919 19 HOH HOH . 
M 7 HOH A 20 920 25 HOH HOH . 
M 7 HOH A 21 921 32 HOH HOH . 
M 7 HOH A 22 922 53 HOH HOH . 
M 7 HOH A 23 923 3 HOH HOH . 
M 7 HOH A 24 924 21 HOH HOH . 
M 7 HOH A 25 925 2 HOH HOH . 
M 7 HOH A 26 926 16 HOH HOH . 
M 7 HOH A 27 927 48 HOH HOH . 
M 7 HOH A 28 928 15 HOH HOH . 
M 7 HOH A 29 929 22 HOH HOH . 
M 7 HOH A 30 930 65 HOH HOH . 
M 7 HOH A 31 931 51 HOH HOH . 
M 7 HOH A 32 932 52 HOH HOH . 
M 7 HOH A 33 933 50 HOH HOH . 
M 7 HOH A 34 934 46 HOH HOH . 
M 7 HOH A 35 935 75 HOH HOH . 
M 7 HOH A 36 936 60 HOH HOH . 
M 7 HOH A 37 937 62 HOH HOH . 
M 7 HOH A 38 938 67 HOH HOH . 
M 7 HOH A 39 939 78 HOH HOH . 
M 7 HOH A 40 940 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 PWN . . . D 3 22.396 -4.491 4.968 1 75.43 ? C14 PWN 802 B 1 
HETATM 2 C C15 PWN . . . D 3 21.907 -4.377 6.382 1 68.87 ? C15 PWN 802 B 1 
HETATM 3 C C16 PWN . . . D 3 21.992 -5.687 7.068 1 74.86 ? C16 PWN 802 B 1 
HETATM 4 C C17 PWN . . . D 3 20.9 -5.849 8.088 1 86.34 ? C17 PWN 802 B 1 
HETATM 5 O O3 PWN . . . D 3 23.567 -4.76 4.709 1 79.4 ? O3 PWN 802 B 1 
HETATM 6 C C18 PWN . . . D 3 19.089 -8.308 9.569 0.57 84.34 ? C18 PWN 802 B 1 
HETATM 7 O O4 PWN . . . D 3 20.222 -4.921 8.528 1 85.76 ? O4 PWN 802 B 1 
HETATM 8 O O5 PWN . . . D 3 16.22 -10.964 9.371 1 89.59 ? O5 PWN 802 B 1 
HETATM 9 C C19 PWN . . . D 3 18.432 -8.68 10.814 0.55 88.9 ? C19 PWN 802 B 1 
HETATM 10 C C20 PWN . . . D 3 18.631 -7.866 11.928 0.69 94.23 ? C20 PWN 802 B 1 
HETATM 11 O O6 PWN . . . D 3 18.429 -11.269 9.158 1 84.69 ? O6 PWN 802 B 1 
HETATM 12 C C21 PWN . . . D 3 18.049 -8.169 13.14 1 98.77 ? C21 PWN 802 B 1 
HETATM 13 C C22 PWN . . . D 3 17.265 -9.294 13.244 0.82 99.64 ? C22 PWN 802 B 1 
HETATM 14 C C23 PWN . . . D 3 17.052 -10.107 12.145 0.57 97.91 ? C23 PWN 802 B 1 
HETATM 15 C C24 PWN . . . D 3 17.644 -9.831 10.917 0.66 88.55 ? C24 PWN 802 B 1 
HETATM 16 C C25 PWN . . . D 3 17.372 -10.738 9.736 0.68 88.26 ? C25 PWN 802 B 1 
HETATM 17 N N7 PWN . . . D 3 20.62 -7.091 8.495 1 82.26 ? N7 PWN 802 B 1 
HETATM 18 N N8 PWN . . . D 3 19.752 -7.226 9.545 0.59 84.42 ? N8 PWN 802 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           18 
#