data_6YWZ
#
_model_server_result.job_id            kTPquydQfq516AtMJHhN5Q 
_model_server_result.datetime_utc      '2024-11-05 01:19:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ywz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":803}' 
#
_entry.id    6YWZ 
#
_exptl.entry_id    6YWZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YWZ 
_cell.length_a            44.566 
_cell.length_b            65.973 
_cell.length_c            86.904 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YWZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C14 PWN . B PWN 802 1_555 E N THR . B THR 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 H C14 PWN . A PWN 801 1_555 I N THR . A THR 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     6YWZ 
_atom_sites.fract_transf_matrix[1][1]    0.022439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG B 1 801 101 PEG PEG . 
D 3 PWN B 1 802 1 PWN Z36 . 
E 4 THR B 1 803 1 THR Z36 . 
F 5 ARG B 1 804 1 ARG Z36 . 
G 6 LEU B 1 805 1 LEU Z36 . 
H 3 PWN A 1 801 1 PWN Z36 . 
I 4 THR A 1 802 1 THR Z36 . 
J 5 ARG A 1 803 1 ARG Z36 . 
K 6 LEU A 1 804 1 LEU Z36 . 
L 7 HOH B 1 901 14 HOH HOH . 
L 7 HOH B 2 902 55 HOH HOH . 
L 7 HOH B 3 903 27 HOH HOH . 
L 7 HOH B 4 904 76 HOH HOH . 
L 7 HOH B 5 905 36 HOH HOH . 
L 7 HOH B 6 906 40 HOH HOH . 
L 7 HOH B 7 907 35 HOH HOH . 
L 7 HOH B 8 908 13 HOH HOH . 
L 7 HOH B 9 909 8 HOH HOH . 
L 7 HOH B 10 910 26 HOH HOH . 
L 7 HOH B 11 911 20 HOH HOH . 
L 7 HOH B 12 912 12 HOH HOH . 
L 7 HOH B 13 913 39 HOH HOH . 
L 7 HOH B 14 914 41 HOH HOH . 
L 7 HOH B 15 915 71 HOH HOH . 
L 7 HOH B 16 916 18 HOH HOH . 
L 7 HOH B 17 917 69 HOH HOH . 
L 7 HOH B 18 918 31 HOH HOH . 
L 7 HOH B 19 919 24 HOH HOH . 
L 7 HOH B 20 920 6 HOH HOH . 
L 7 HOH B 21 921 11 HOH HOH . 
L 7 HOH B 22 922 68 HOH HOH . 
L 7 HOH B 23 923 54 HOH HOH . 
L 7 HOH B 24 924 30 HOH HOH . 
L 7 HOH B 25 925 47 HOH HOH . 
L 7 HOH B 26 926 1 HOH HOH . 
L 7 HOH B 27 927 59 HOH HOH . 
L 7 HOH B 28 928 49 HOH HOH . 
L 7 HOH B 29 929 70 HOH HOH . 
L 7 HOH B 30 930 23 HOH HOH . 
L 7 HOH B 31 931 74 HOH HOH . 
L 7 HOH B 32 932 56 HOH HOH . 
L 7 HOH B 33 933 73 HOH HOH . 
L 7 HOH B 34 934 61 HOH HOH . 
L 7 HOH B 35 935 44 HOH HOH . 
L 7 HOH B 36 936 45 HOH HOH . 
M 7 HOH A 1 901 66 HOH HOH . 
M 7 HOH A 2 902 64 HOH HOH . 
M 7 HOH A 3 903 63 HOH HOH . 
M 7 HOH A 4 904 4 HOH HOH . 
M 7 HOH A 5 905 38 HOH HOH . 
M 7 HOH A 6 906 34 HOH HOH . 
M 7 HOH A 7 907 42 HOH HOH . 
M 7 HOH A 8 908 9 HOH HOH . 
M 7 HOH A 9 909 28 HOH HOH . 
M 7 HOH A 10 910 29 HOH HOH . 
M 7 HOH A 11 911 17 HOH HOH . 
M 7 HOH A 12 912 33 HOH HOH . 
M 7 HOH A 13 913 5 HOH HOH . 
M 7 HOH A 14 914 43 HOH HOH . 
M 7 HOH A 15 915 37 HOH HOH . 
M 7 HOH A 16 916 77 HOH HOH . 
M 7 HOH A 17 917 10 HOH HOH . 
M 7 HOH A 18 918 7 HOH HOH . 
M 7 HOH A 19 919 19 HOH HOH . 
M 7 HOH A 20 920 25 HOH HOH . 
M 7 HOH A 21 921 32 HOH HOH . 
M 7 HOH A 22 922 53 HOH HOH . 
M 7 HOH A 23 923 3 HOH HOH . 
M 7 HOH A 24 924 21 HOH HOH . 
M 7 HOH A 25 925 2 HOH HOH . 
M 7 HOH A 26 926 16 HOH HOH . 
M 7 HOH A 27 927 48 HOH HOH . 
M 7 HOH A 28 928 15 HOH HOH . 
M 7 HOH A 29 929 22 HOH HOH . 
M 7 HOH A 30 930 65 HOH HOH . 
M 7 HOH A 31 931 51 HOH HOH . 
M 7 HOH A 32 932 52 HOH HOH . 
M 7 HOH A 33 933 50 HOH HOH . 
M 7 HOH A 34 934 46 HOH HOH . 
M 7 HOH A 35 935 75 HOH HOH . 
M 7 HOH A 36 936 60 HOH HOH . 
M 7 HOH A 37 937 62 HOH HOH . 
M 7 HOH A 38 938 67 HOH HOH . 
M 7 HOH A 39 939 78 HOH HOH . 
M 7 HOH A 40 940 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . J 5 -22.624 -2.78 24.337 1 54.25 ? N ARG 803 A 1 
HETATM 2 C CA ARG . . . J 5 -22.578 -1.713 25.32 1 55.97 ? CA ARG 803 A 1 
HETATM 3 C C ARG . . . J 5 -21.895 -2.211 26.591 1 54.22 ? C ARG 803 A 1 
HETATM 4 O O ARG . . . J 5 -22.242 -3.287 27.077 1 52.5 ? O ARG 803 A 1 
HETATM 5 C CB ARG . . . J 5 -23.988 -1.232 25.644 1 56.5 ? CB ARG 803 A 1 
HETATM 6 C CG ARG . . . J 5 -24.053 -0.259 26.811 1 56.47 ? CG ARG 803 A 1 
HETATM 7 C CD ARG . . . J 5 -25.434 0.392 26.864 1 55.73 ? CD ARG 803 A 1 
HETATM 8 N NE ARG . . . J 5 -25.588 1.534 25.968 1 53.23 ? NE ARG 803 A 1 
HETATM 9 C CZ ARG . . . J 5 -25.011 2.718 26.161 1 61.8 ? CZ ARG 803 A 1 
HETATM 10 N NH1 ARG . . . J 5 -24.308 2.953 27.262 1 62.81 ? NH1 ARG 803 A 1 
HETATM 11 N NH2 ARG . . . J 5 -25.133 3.666 25.246 1 57.72 ? NH2 ARG 803 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#