data_6YX9
#
_model_server_result.job_id            orvozr9PnmYLNodkq0PHmA 
_model_server_result.datetime_utc      '2024-10-15 11:24:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yx9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":406}' 
#
_entry.id    6YX9 
#
_exptl.entry_id    6YX9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YX9 
_cell.length_a            74.72 
_cell.length_b            100.58 
_cell.length_c            109.69 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YX9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc4 D ZN ZN . A ZN 401 1_555 J O1 OLA . A OLA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 303 n n 
C1 O20 OLB sing 304 n n 
C2 C1 OLB sing 305 n n 
C3 C2 OLB sing 306 n n 
C4 C3 OLB sing 307 n n 
C5 C4 OLB sing 308 n n 
C5 C6 OLB sing 309 n n 
O20 C21 OLB sing 310 n n 
C21 C22 OLB sing 311 n n 
C22 C24 OLB sing 312 n n 
O23 C22 OLB sing 313 n n 
C24 O25 OLB sing 314 n n 
C6 C7 OLB sing 315 n n 
C7 C8 OLB sing 316 n n 
C8 C9 OLB sing 317 n n 
C9 C10 OLB doub 318 z n 
C10 C11 OLB sing 319 n n 
C2 H2 OLB sing 320 n n 
C2 H2A OLB sing 321 n n 
C3 H3 OLB sing 322 n n 
C3 H3A OLB sing 323 n n 
C4 H4 OLB sing 324 n n 
C4 H4A OLB sing 325 n n 
C5 H5 OLB sing 326 n n 
C5 H5A OLB sing 327 n n 
C21 H21 OLB sing 328 n n 
C21 H21A OLB sing 329 n n 
C22 H22 OLB sing 330 n n 
O23 HO23 OLB sing 331 n n 
C24 H24 OLB sing 332 n n 
C24 H24A OLB sing 333 n n 
O25 HO25 OLB sing 334 n n 
C6 H16 OLB sing 335 n n 
C6 H17 OLB sing 336 n n 
C7 H18 OLB sing 337 n n 
C7 H19 OLB sing 338 n n 
C8 H20 OLB sing 339 n n 
C8 H211 OLB sing 340 n n 
C9 H221 OLB sing 341 n n 
C10 H23 OLB sing 342 n n 
C11 H241 OLB sing 343 n n 
C11 H25 OLB sing 344 n n 
C11 C12 OLB sing 345 n n 
C12 H26 OLB sing 346 n n 
C12 C13 OLB sing 347 n n 
C12 H27 OLB sing 348 n n 
C13 C14 OLB sing 349 n n 
C13 H28 OLB sing 350 n n 
C13 H29 OLB sing 351 n n 
C14 H30 OLB sing 352 n n 
C14 H31 OLB sing 353 n n 
C14 C15 OLB sing 354 n n 
C15 C16 OLB sing 355 n n 
C15 H32 OLB sing 356 n n 
C15 H33 OLB sing 357 n n 
C16 H34 OLB sing 358 n n 
C16 H35 OLB sing 359 n n 
C16 C17 OLB sing 360 n n 
C17 C18 OLB sing 361 n n 
C17 H36 OLB sing 362 n n 
C17 H37 OLB sing 363 n n 
C18 H38 OLB sing 364 n n 
C18 H39 OLB sing 365 n n 
C18 H40 OLB sing 366 n n 
#
_atom_sites.entry_id                     6YX9 
_atom_sites.fract_transf_matrix[1][1]    0.013383 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009942 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN A 1 401 401 ZN ZN . 
E 5 OLB A 1 402 402 OLB OLB . 
F 5 OLB A 1 403 404 OLB OLB . 
G 5 OLB A 1 404 405 OLB OLB . 
H 5 OLB A 1 405 408 OLB OLB . 
I 5 OLB A 1 406 409 OLB OLB . 
J 6 OLA A 1 407 410 OLA OLA . 
K 7 GOL L 1 201 201 GOL GOL . 
L 8 HOH A 1 501 136 HOH HOH . 
L 8 HOH A 2 502 134 HOH HOH . 
L 8 HOH A 3 503 3 HOH HOH . 
L 8 HOH A 4 504 96 HOH HOH . 
L 8 HOH A 5 505 1 HOH HOH . 
L 8 HOH A 6 506 77 HOH HOH . 
L 8 HOH A 7 507 10 HOH HOH . 
L 8 HOH A 8 508 12 HOH HOH . 
L 8 HOH A 9 509 31 HOH HOH . 
L 8 HOH A 10 510 38 HOH HOH . 
L 8 HOH A 11 511 56 HOH HOH . 
L 8 HOH A 12 512 110 HOH HOH . 
L 8 HOH A 13 513 43 HOH HOH . 
L 8 HOH A 14 514 89 HOH HOH . 
L 8 HOH A 15 515 130 HOH HOH . 
L 8 HOH A 16 516 108 HOH HOH . 
L 8 HOH A 17 517 126 HOH HOH . 
L 8 HOH A 18 518 37 HOH HOH . 
L 8 HOH A 19 519 73 HOH HOH . 
L 8 HOH A 20 520 57 HOH HOH . 
L 8 HOH A 21 521 65 HOH HOH . 
L 8 HOH A 22 522 14 HOH HOH . 
L 8 HOH A 23 523 78 HOH HOH . 
L 8 HOH A 24 524 52 HOH HOH . 
L 8 HOH A 25 525 85 HOH HOH . 
L 8 HOH A 26 526 30 HOH HOH . 
L 8 HOH A 27 527 109 HOH HOH . 
L 8 HOH A 28 528 71 HOH HOH . 
L 8 HOH A 29 529 68 HOH HOH . 
L 8 HOH A 30 530 39 HOH HOH . 
L 8 HOH A 31 531 101 HOH HOH . 
L 8 HOH A 32 532 107 HOH HOH . 
L 8 HOH A 33 533 67 HOH HOH . 
L 8 HOH A 34 534 100 HOH HOH . 
M 8 HOH H 1 201 35 HOH HOH . 
M 8 HOH H 2 202 132 HOH HOH . 
M 8 HOH H 3 203 95 HOH HOH . 
M 8 HOH H 4 204 53 HOH HOH . 
M 8 HOH H 5 205 34 HOH HOH . 
M 8 HOH H 6 206 119 HOH HOH . 
M 8 HOH H 7 207 127 HOH HOH . 
M 8 HOH H 8 208 59 HOH HOH . 
M 8 HOH H 9 209 4 HOH HOH . 
M 8 HOH H 10 210 7 HOH HOH . 
M 8 HOH H 11 211 133 HOH HOH . 
M 8 HOH H 12 212 54 HOH HOH . 
M 8 HOH H 13 213 9 HOH HOH . 
M 8 HOH H 14 214 112 HOH HOH . 
M 8 HOH H 15 215 36 HOH HOH . 
M 8 HOH H 16 216 49 HOH HOH . 
M 8 HOH H 17 217 116 HOH HOH . 
M 8 HOH H 18 218 60 HOH HOH . 
M 8 HOH H 19 219 40 HOH HOH . 
M 8 HOH H 20 220 74 HOH HOH . 
M 8 HOH H 21 221 23 HOH HOH . 
M 8 HOH H 22 222 17 HOH HOH . 
M 8 HOH H 23 223 105 HOH HOH . 
M 8 HOH H 24 224 120 HOH HOH . 
M 8 HOH H 25 225 16 HOH HOH . 
M 8 HOH H 26 226 48 HOH HOH . 
M 8 HOH H 27 227 86 HOH HOH . 
M 8 HOH H 28 228 91 HOH HOH . 
M 8 HOH H 29 229 29 HOH HOH . 
M 8 HOH H 30 230 20 HOH HOH . 
M 8 HOH H 31 231 97 HOH HOH . 
M 8 HOH H 32 232 106 HOH HOH . 
M 8 HOH H 33 233 111 HOH HOH . 
M 8 HOH H 34 234 25 HOH HOH . 
M 8 HOH H 35 235 93 HOH HOH . 
M 8 HOH H 36 236 22 HOH HOH . 
M 8 HOH H 37 237 113 HOH HOH . 
M 8 HOH H 38 238 81 HOH HOH . 
M 8 HOH H 39 239 18 HOH HOH . 
M 8 HOH H 40 240 82 HOH HOH . 
M 8 HOH H 41 241 125 HOH HOH . 
M 8 HOH H 42 242 103 HOH HOH . 
N 8 HOH L 1 301 8 HOH HOH . 
N 8 HOH L 2 302 131 HOH HOH . 
N 8 HOH L 3 303 135 HOH HOH . 
N 8 HOH L 4 304 69 HOH HOH . 
N 8 HOH L 5 305 121 HOH HOH . 
N 8 HOH L 6 306 114 HOH HOH . 
N 8 HOH L 7 307 33 HOH HOH . 
N 8 HOH L 8 308 51 HOH HOH . 
N 8 HOH L 9 309 41 HOH HOH . 
N 8 HOH L 10 310 21 HOH HOH . 
N 8 HOH L 11 311 117 HOH HOH . 
N 8 HOH L 12 312 87 HOH HOH . 
N 8 HOH L 13 313 128 HOH HOH . 
N 8 HOH L 14 314 32 HOH HOH . 
N 8 HOH L 15 315 47 HOH HOH . 
N 8 HOH L 16 316 64 HOH HOH . 
N 8 HOH L 17 317 13 HOH HOH . 
N 8 HOH L 18 318 98 HOH HOH . 
N 8 HOH L 19 319 42 HOH HOH . 
N 8 HOH L 20 320 83 HOH HOH . 
N 8 HOH L 21 321 124 HOH HOH . 
N 8 HOH L 22 322 129 HOH HOH . 
N 8 HOH L 23 323 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . I 5 -2.206 12.567 -31.311 1 131.72 ? C1 OLB 406 A 1 
HETATM 2 C C2 OLB . . . I 5 -1.056 12.733 -30.352 1 130.18 ? C2 OLB 406 A 1 
HETATM 3 C C3 OLB . . . I 5 -0.606 11.428 -29.697 1 128.48 ? C3 OLB 406 A 1 
HETATM 4 C C4 OLB . . . I 5 0.286 10.592 -30.604 1 127.05 ? C4 OLB 406 A 1 
HETATM 5 C C5 OLB . . . I 5 0.438 9.125 -30.22 1 125.44 ? C5 OLB 406 A 1 
HETATM 6 O O19 OLB . . . I 5 -3.203 11.929 -31.078 1 132.12 ? O19 OLB 406 A 1 
HETATM 7 O O20 OLB . . . I 5 -1.994 13.225 -32.464 1 132.5 ? O20 OLB 406 A 1 
HETATM 8 C C21 OLB . . . I 5 -2.972 13.044 -33.521 1 132.82 ? C21 OLB 406 A 1 
HETATM 9 C C22 OLB . . . I 5 -2.7 14.08 -34.591 1 132.85 ? C22 OLB 406 A 1 
HETATM 10 O O23 OLB . . . I 5 -3.437 13.77 -35.781 1 132.43 ? O23 OLB 406 A 1 
HETATM 11 C C24 OLB . . . I 5 -3.001 15.488 -34.13 1 133.19 ? C24 OLB 406 A 1 
HETATM 12 O O25 OLB . . . I 5 -2.473 16.471 -35.018 1 133.24 ? O25 OLB 406 A 1 
HETATM 13 C C6 OLB . . . I 5 1.627 8.462 -30.899 1 123.99 ? C6 OLB 406 A 1 
HETATM 14 C C7 OLB . . . I 5 1.851 6.993 -30.581 1 122.55 ? C7 OLB 406 A 1 
HETATM 15 C C8 OLB . . . I 5 1.901 6.627 -29.087 1 121.16 ? C8 OLB 406 A 1 
HETATM 16 C C9 OLB . . . I 5 2.897 7.391 -28.273 1 119.53 ? C9 OLB 406 A 1 
HETATM 17 C C10 OLB . . . I 5 4.035 6.948 -27.773 1 118.08 ? C10 OLB 406 A 1 
HETATM 18 C C11 OLB . . . I 5 4.612 5.573 -27.896 1 116.68 ? C11 OLB 406 A 1 
HETATM 19 C C12 OLB . . . I 5 5.991 5.483 -27.251 1 115.21 ? C12 OLB 406 A 1 
HETATM 20 C C13 OLB . . . I 5 7.113 5.696 -28.234 1 114.15 ? C13 OLB 406 A 1 
HETATM 21 C C14 OLB . . . I 5 8.378 6.228 -27.613 1 113.56 ? C14 OLB 406 A 1 
HETATM 22 C C15 OLB . . . I 5 9.463 6.561 -28.628 1 112.74 ? C15 OLB 406 A 1 
HETATM 23 C C16 OLB . . . I 5 10.053 5.339 -29.287 1 111.76 ? C16 OLB 406 A 1 
HETATM 24 C C17 OLB . . . I 5 10.699 4.417 -28.279 1 111.14 ? C17 OLB 406 A 1 
HETATM 25 C C18 OLB . . . I 5 11.377 3.263 -28.902 1 110.78 ? C18 OLB 406 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#