data_6YXF
#
_model_server_result.job_id            m1bWS0mnikcEmqsFjqM2Yg 
_model_server_result.datetime_utc      '2024-10-20 19:25:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":302}' 
#
_entry.id    6YXF 
#
_exptl.entry_id    6YXF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              157.25 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GADOLINIUM ATOM' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YXF 
_cell.length_a            74.64 
_cell.length_b            100.65 
_cell.length_c            111.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 B SG CYS 144 H CYS 162 1_555 B SG CYS 209 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 J GD GD . A GD 408 1_555 L N1 DO3 . A DO3 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc5 J GD GD . A GD 408 1_555 L N4 DO3 . A DO3 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc6 J GD GD . A GD 408 1_555 L N2 DO3 . A DO3 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc7 J GD GD . A GD 408 1_555 L O3 DO3 . A DO3 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc8 J GD GD . A GD 408 1_555 L O5 DO3 . A DO3 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc9 K GD GD . A GD 409 1_555 M N1 DO3 . A DO3 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc10 K GD GD . A GD 409 1_555 M N4 DO3 . A DO3 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? 
metalc ? metalc11 K GD GD . A GD 409 1_555 M N2 DO3 . A DO3 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc12 K GD GD . A GD 409 1_555 M N3 DO3 . A DO3 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc13 K GD GD . A GD 409 1_555 M O1 DO3 . A DO3 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? 
metalc ? metalc14 L N1 DO3 . A DO3 410 1_555 O GD GD . H GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? 
metalc ? metalc15 O GD GD . H GD 302 1_555 P N1 DO3 . H DO3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc16 O GD GD . H GD 302 1_555 P N2 DO3 . H DO3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc17 O GD GD . H GD 302 1_555 P N3 DO3 . H DO3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           Gd 
_chem_comp.formula_weight    157.25 
_chem_comp.id                GD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GADOLINIUM ATOM' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YXF 
_atom_sites.fract_transf_matrix[1][1]    0.013398 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009935 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008993 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 OLA A 1 402 402 OLA OLA . 
E 5 OLB A 1 403 404 OLB OLB . 
F 5 OLB A 1 404 406 OLB OLB . 
G 5 OLB A 1 405 407 OLB OLB . 
H 5 OLB A 1 406 410 OLB OLB . 
I 5 OLB A 1 407 411 OLB OLB . 
J 6 GD A 1 408 1 GD GD . 
K 6 GD A 1 409 4 GD GD . 
L 7 DO3 A 1 410 1 DO3 DO3 . 
M 7 DO3 A 1 411 2 DO3 DO3 . 
N 5 OLB H 1 301 301 OLB OLB . 
O 6 GD H 1 302 2 GD GD . 
P 7 DO3 H 1 303 3 DO3 DO3 . 
Q 8 HOH A 1 501 99 HOH HOH . 
Q 8 HOH A 2 502 93 HOH HOH . 
Q 8 HOH A 3 503 104 HOH HOH . 
Q 8 HOH A 4 504 57 HOH HOH . 
Q 8 HOH A 5 505 65 HOH HOH . 
Q 8 HOH A 6 506 95 HOH HOH . 
Q 8 HOH A 7 507 16 HOH HOH . 
Q 8 HOH A 8 508 100 HOH HOH . 
Q 8 HOH A 9 509 68 HOH HOH . 
Q 8 HOH A 10 510 14 HOH HOH . 
Q 8 HOH A 11 511 40 HOH HOH . 
Q 8 HOH A 12 512 18 HOH HOH . 
Q 8 HOH A 13 513 60 HOH HOH . 
Q 8 HOH A 14 514 31 HOH HOH . 
R 8 HOH H 1 401 46 HOH HOH . 
R 8 HOH H 2 402 4 HOH HOH . 
R 8 HOH H 3 403 94 HOH HOH . 
R 8 HOH H 4 404 2 HOH HOH . 
R 8 HOH H 5 405 98 HOH HOH . 
R 8 HOH H 6 406 42 HOH HOH . 
R 8 HOH H 7 407 19 HOH HOH . 
R 8 HOH H 8 408 48 HOH HOH . 
R 8 HOH H 9 409 63 HOH HOH . 
R 8 HOH H 10 410 22 HOH HOH . 
R 8 HOH H 11 411 82 HOH HOH . 
R 8 HOH H 12 412 54 HOH HOH . 
R 8 HOH H 13 413 66 HOH HOH . 
R 8 HOH H 14 414 89 HOH HOH . 
R 8 HOH H 15 415 39 HOH HOH . 
R 8 HOH H 16 416 5 HOH HOH . 
R 8 HOH H 17 417 97 HOH HOH . 
R 8 HOH H 18 418 90 HOH HOH . 
R 8 HOH H 19 419 52 HOH HOH . 
R 8 HOH H 20 420 74 HOH HOH . 
R 8 HOH H 21 421 38 HOH HOH . 
R 8 HOH H 22 422 75 HOH HOH . 
R 8 HOH H 23 423 10 HOH HOH . 
R 8 HOH H 24 424 1 HOH HOH . 
R 8 HOH H 25 425 8 HOH HOH . 
R 8 HOH H 26 426 44 HOH HOH . 
R 8 HOH H 27 427 43 HOH HOH . 
R 8 HOH H 28 428 6 HOH HOH . 
R 8 HOH H 29 429 73 HOH HOH . 
R 8 HOH H 30 430 21 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           GD 
_atom_site.label_atom_id         GD 
_atom_site.label_comp_id         GD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               20.983 
_atom_site.Cartn_y               -15.43 
_atom_site.Cartn_z               -42.11 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        190.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          GD 
_atom_site.auth_comp_id          GD 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#