data_6YXG
#
_model_server_result.job_id            gbtvtAegbpHPnGoqX8_CKg 
_model_server_result.datetime_utc      '2025-08-01 11:16:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":302}' 
#
_entry.id    6YXG 
#
_exptl.entry_id    6YXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.353 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tb-Xo4 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YXG 
_cell.length_a            74.61 
_cell.length_b            100.69 
_cell.length_c            110.51 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 B SG CYS 152 H CYS 162 1_555 B SG CYS 217 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O2 OLA . A OLA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
#
_chem_comp.formula           'C20 H23 N5 O4 Tb 5' 
_chem_comp.formula_weight    556.353 
_chem_comp.id                7MT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tb-Xo4 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 7MT doub 1 n y 
C21 C22 7MT sing 2 n y 
C10 C13 7MT doub 3 n y 
C10 C30 7MT sing 4 n n 
C10 N17 7MT sing 5 n y 
C11 C19 7MT doub 6 n y 
C11 C29 7MT sing 7 n n 
C11 N23 7MT sing 8 n y 
C01 C03 7MT sing 9 n n 
C01 N02 7MT sing 10 n n 
C03 N09 7MT sing 11 n n 
C04 C05 7MT sing 12 n n 
C04 N02 7MT sing 13 n n 
C05 N06 7MT sing 14 n n 
C07 C08 7MT sing 15 n n 
C07 N06 7MT sing 16 n n 
C08 N09 7MT sing 17 n n 
C13 C14 7MT sing 18 n y 
C14 C15 7MT doub 19 n y 
C15 C16 7MT sing 20 n y 
C16 C18 7MT sing 21 n n 
C16 N17 7MT doub 22 n y 
C18 O27 7MT sing 23 n n 
C18 O28 7MT doub 24 n n 
C19 C20 7MT sing 25 n y 
C22 C24 7MT sing 26 n n 
C22 N23 7MT doub 27 n y 
C24 O25 7MT doub 28 n n 
C24 O26 7MT sing 29 n n 
C29 N09 7MT sing 30 n n 
C30 N02 7MT sing 31 n n 
N23 TB 7MT sing 32 n n 
C21 H211 7MT sing 33 n n 
C01 H012 7MT sing 34 n n 
C01 H011 7MT sing 35 n n 
C03 H031 7MT sing 36 n n 
C03 H032 7MT sing 37 n n 
C04 H042 7MT sing 38 n n 
C04 H041 7MT sing 39 n n 
C05 H051 7MT sing 40 n n 
C05 H052 7MT sing 41 n n 
C07 H072 7MT sing 42 n n 
C07 H071 7MT sing 43 n n 
C08 H081 7MT sing 44 n n 
C08 H082 7MT sing 45 n n 
C13 H131 7MT sing 46 n n 
C14 H141 7MT sing 47 n n 
C15 H151 7MT sing 48 n n 
C19 H191 7MT sing 49 n n 
C20 H201 7MT sing 50 n n 
C29 H292 7MT sing 51 n n 
C29 H291 7MT sing 52 n n 
C30 H302 7MT sing 53 n n 
C30 H301 7MT sing 54 n n 
N02 TB 7MT sing 55 n n 
N06 TB 7MT sing 56 n n 
N06 H061 7MT sing 57 n n 
N09 TB 7MT sing 58 n n 
O26 TB 7MT sing 59 n n 
N17 TB 7MT sing 60 n n 
O27 TB 7MT sing 61 n n 
#
_atom_sites.entry_id                     6YXG 
_atom_sites.fract_transf_matrix[1][1]    0.013403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 OLA A 1 402 402 OLA OLA . 
E 5 OLB A 1 403 403 OLB OLB . 
F 5 OLB A 1 404 404 OLB OLB . 
G 5 OLB A 1 405 405 OLB OLB . 
H 5 OLB A 1 406 406 OLB OLB . 
I 5 OLB A 1 407 407 OLB OLB . 
J 5 OLB A 1 408 409 OLB OLB . 
K 5 OLB A 1 409 410 OLB OLB . 
L 5 OLB A 1 410 411 OLB OLB . 
M 5 OLB A 1 411 412 OLB OLB . 
N 5 OLB H 1 301 301 OLB OLB . 
O 6 7MT H 1 302 2 7MT XO4 . 
P 6 7MT H 1 303 1 7MT XO4 . 
Q 7 HOH A 1 501 3 HOH HOH . 
Q 7 HOH A 2 502 31 HOH HOH . 
Q 7 HOH A 3 503 22 HOH HOH . 
Q 7 HOH A 4 504 46 HOH HOH . 
Q 7 HOH A 5 505 26 HOH HOH . 
Q 7 HOH A 6 506 6 HOH HOH . 
Q 7 HOH A 7 507 30 HOH HOH . 
Q 7 HOH A 8 508 19 HOH HOH . 
Q 7 HOH A 9 509 29 HOH HOH . 
Q 7 HOH A 10 510 43 HOH HOH . 
Q 7 HOH A 11 511 44 HOH HOH . 
Q 7 HOH A 12 512 39 HOH HOH . 
R 7 HOH H 1 401 15 HOH HOH . 
R 7 HOH H 2 402 1 HOH HOH . 
R 7 HOH H 3 403 24 HOH HOH . 
R 7 HOH H 4 404 35 HOH HOH . 
R 7 HOH H 5 405 28 HOH HOH . 
R 7 HOH H 6 406 5 HOH HOH . 
R 7 HOH H 7 407 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 7MT . . . O 6 21.094 0.796 -13.452 1 111.54 ? C21 7MT 302 H 1 
HETATM 2 C C10 7MT . . . O 6 25.067 5.011 -17.019 1 105.44 ? C10 7MT 302 H 1 
HETATM 3 C C11 7MT . . . O 6 23.7 1.585 -13.666 1 109.75 ? C11 7MT 302 H 1 
HETATM 4 C C01 7MT . . . O 6 26.471 5.502 -14.497 1 106.18 ? C01 7MT 302 H 1 
HETATM 5 C C03 7MT . . . O 6 26.495 3.99 -14.197 1 106.35 ? C03 7MT 302 H 1 
HETATM 6 C C04 7MT . . . O 6 24.715 7.173 -13.93 1 106.26 ? C04 7MT 302 H 1 
HETATM 7 C C05 7MT . . . O 6 24.132 6.847 -12.528 1 106.3 ? C05 7MT 302 H 1 
HETATM 8 C C07 7MT . . . O 6 23.778 4.443 -11.693 1 105.98 ? C07 7MT 302 H 1 
HETATM 9 C C08 7MT . . . O 6 25.178 3.959 -12.094 1 106.3 ? C08 7MT 302 H 1 
HETATM 10 C C13 7MT . . . O 6 26.11 4.954 -17.934 1 105.12 ? C13 7MT 302 H 1 
HETATM 11 C C14 7MT . . . O 6 26.284 3.79 -18.664 1 105.19 ? C14 7MT 302 H 1 
HETATM 12 C C15 7MT . . . O 6 25.409 2.728 -18.484 1 105.36 ? C15 7MT 302 H 1 
HETATM 13 C C16 7MT . . . O 6 24.368 2.871 -17.57 1 105.54 ? C16 7MT 302 H 1 
HETATM 14 C C18 7MT . . . O 6 23.294 1.796 -17.461 1 106.28 ? C18 7MT 302 H 1 
HETATM 15 C C19 7MT . . . O 6 23.388 0.242 -13.837 1 110.3 ? C19 7MT 302 H 1 
HETATM 16 C C20 7MT . . . O 6 22.066 -0.15 -13.719 1 111.02 ? C20 7MT 302 H 1 
HETATM 17 C C22 7MT . . . O 6 21.476 2.126 -13.357 1 111.99 ? C22 7MT 302 H 1 
HETATM 18 C C24 7MT . . . O 6 20.412 3.204 -13.212 1 113.3 ? C24 7MT 302 H 1 
HETATM 19 C C29 7MT . . . O 6 25.138 2.046 -13.609 1 108.27 ? C29 7MT 302 H 1 
HETATM 20 C C30 7MT . . . O 6 24.853 6.244 -16.172 1 105.76 ? C30 7MT 302 H 1 
HETATM 21 N N02 7MT . . . O 6 25.114 6.022 -14.741 1 106.31 ? N02 7MT 302 H 1 
HETATM 22 N N06 7MT . . . O 6 23.31 5.606 -12.498 1 106.27 ? N06 7MT 302 H 1 
HETATM 23 N N09 7MT . . . O 6 25.294 3.506 -13.491 1 107.02 ? N09 7MT 302 H 1 
HETATM 24 N N17 7MT . . . O 6 24.204 3.98 -16.828 1 105.29 ? N17 7MT 302 H 1 
HETATM 25 N N23 7MT . . . O 6 22.754 2.526 -13.447 1 110.84 ? N23 7MT 302 H 1 
HETATM 26 O O25 7MT . . . O 6 19.213 2.818 -13.121 1 113.52 ? O25 7MT 302 H 1 
HETATM 27 O O26 7MT . . . O 6 20.791 4.411 -13.261 1 113.84 ? O26 7MT 302 H 1 
HETATM 28 O O27 7MT . . . O 6 23.358 0.811 -18.258 1 106.55 ? O27 7MT 302 H 1 
HETATM 29 O O28 7MT . . . O 6 22.376 1.971 -16.616 1 106.69 ? O28 7MT 302 H 1 
HETATM 30 TB TB 7MT . . . O 6 22.499 4.472 -14.714 1 231.48 ? TB 7MT 302 H 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           30 
#