data_6YXG
#
_model_server_result.job_id            HGTQIwRPG4-tOXC3ScDgHw 
_model_server_result.datetime_utc      '2025-07-30 19:42:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":303}' 
#
_entry.id    6YXG 
#
_exptl.entry_id    6YXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.353 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tb-Xo4 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YXG 
_cell.length_a            74.61 
_cell.length_b            100.69 
_cell.length_c            110.51 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 B SG CYS 152 H CYS 162 1_555 B SG CYS 217 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O2 OLA . A OLA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
#
_chem_comp.formula           'C20 H23 N5 O4 Tb 5' 
_chem_comp.formula_weight    556.353 
_chem_comp.id                7MT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tb-Xo4 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 7MT doub 1 n y 
C21 C22 7MT sing 2 n y 
C10 C13 7MT doub 3 n y 
C10 C30 7MT sing 4 n n 
C10 N17 7MT sing 5 n y 
C11 C19 7MT doub 6 n y 
C11 C29 7MT sing 7 n n 
C11 N23 7MT sing 8 n y 
C01 C03 7MT sing 9 n n 
C01 N02 7MT sing 10 n n 
C03 N09 7MT sing 11 n n 
C04 C05 7MT sing 12 n n 
C04 N02 7MT sing 13 n n 
C05 N06 7MT sing 14 n n 
C07 C08 7MT sing 15 n n 
C07 N06 7MT sing 16 n n 
C08 N09 7MT sing 17 n n 
C13 C14 7MT sing 18 n y 
C14 C15 7MT doub 19 n y 
C15 C16 7MT sing 20 n y 
C16 C18 7MT sing 21 n n 
C16 N17 7MT doub 22 n y 
C18 O27 7MT sing 23 n n 
C18 O28 7MT doub 24 n n 
C19 C20 7MT sing 25 n y 
C22 C24 7MT sing 26 n n 
C22 N23 7MT doub 27 n y 
C24 O25 7MT doub 28 n n 
C24 O26 7MT sing 29 n n 
C29 N09 7MT sing 30 n n 
C30 N02 7MT sing 31 n n 
N23 TB 7MT sing 32 n n 
C21 H211 7MT sing 33 n n 
C01 H012 7MT sing 34 n n 
C01 H011 7MT sing 35 n n 
C03 H031 7MT sing 36 n n 
C03 H032 7MT sing 37 n n 
C04 H042 7MT sing 38 n n 
C04 H041 7MT sing 39 n n 
C05 H051 7MT sing 40 n n 
C05 H052 7MT sing 41 n n 
C07 H072 7MT sing 42 n n 
C07 H071 7MT sing 43 n n 
C08 H081 7MT sing 44 n n 
C08 H082 7MT sing 45 n n 
C13 H131 7MT sing 46 n n 
C14 H141 7MT sing 47 n n 
C15 H151 7MT sing 48 n n 
C19 H191 7MT sing 49 n n 
C20 H201 7MT sing 50 n n 
C29 H292 7MT sing 51 n n 
C29 H291 7MT sing 52 n n 
C30 H302 7MT sing 53 n n 
C30 H301 7MT sing 54 n n 
N02 TB 7MT sing 55 n n 
N06 TB 7MT sing 56 n n 
N06 H061 7MT sing 57 n n 
N09 TB 7MT sing 58 n n 
O26 TB 7MT sing 59 n n 
N17 TB 7MT sing 60 n n 
O27 TB 7MT sing 61 n n 
#
_atom_sites.entry_id                     6YXG 
_atom_sites.fract_transf_matrix[1][1]    0.013403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 OLA A 1 402 402 OLA OLA . 
E 5 OLB A 1 403 403 OLB OLB . 
F 5 OLB A 1 404 404 OLB OLB . 
G 5 OLB A 1 405 405 OLB OLB . 
H 5 OLB A 1 406 406 OLB OLB . 
I 5 OLB A 1 407 407 OLB OLB . 
J 5 OLB A 1 408 409 OLB OLB . 
K 5 OLB A 1 409 410 OLB OLB . 
L 5 OLB A 1 410 411 OLB OLB . 
M 5 OLB A 1 411 412 OLB OLB . 
N 5 OLB H 1 301 301 OLB OLB . 
O 6 7MT H 1 302 2 7MT XO4 . 
P 6 7MT H 1 303 1 7MT XO4 . 
Q 7 HOH A 1 501 3 HOH HOH . 
Q 7 HOH A 2 502 31 HOH HOH . 
Q 7 HOH A 3 503 22 HOH HOH . 
Q 7 HOH A 4 504 46 HOH HOH . 
Q 7 HOH A 5 505 26 HOH HOH . 
Q 7 HOH A 6 506 6 HOH HOH . 
Q 7 HOH A 7 507 30 HOH HOH . 
Q 7 HOH A 8 508 19 HOH HOH . 
Q 7 HOH A 9 509 29 HOH HOH . 
Q 7 HOH A 10 510 43 HOH HOH . 
Q 7 HOH A 11 511 44 HOH HOH . 
Q 7 HOH A 12 512 39 HOH HOH . 
R 7 HOH H 1 401 15 HOH HOH . 
R 7 HOH H 2 402 1 HOH HOH . 
R 7 HOH H 3 403 24 HOH HOH . 
R 7 HOH H 4 404 35 HOH HOH . 
R 7 HOH H 5 405 28 HOH HOH . 
R 7 HOH H 6 406 5 HOH HOH . 
R 7 HOH H 7 407 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 7MT . . . P 6 -4.986 7.418 -9.707 1 174.01 ? C21 7MT 303 H 1 
HETATM 2 C C10 7MT . . . P 6 4.041 8.194 -9.631 1 171.24 ? C10 7MT 303 H 1 
HETATM 3 C C11 7MT . . . P 6 -2.436 8.312 -10.094 1 173.63 ? C11 7MT 303 H 1 
HETATM 4 C C01 7MT . . . P 6 2.22 7.236 -11.454 1 172.08 ? C01 7MT 303 H 1 
HETATM 5 C C03 7MT . . . P 6 1.23 8.289 -10.969 1 172.28 ? C03 7MT 303 H 1 
HETATM 6 C C04 7MT . . . P 6 2.667 4.902 -10.834 1 171.76 ? C04 7MT 303 H 1 
HETATM 7 C C05 7MT . . . P 6 1.294 4.308 -11.141 1 171.8 ? C05 7MT 303 H 1 
HETATM 8 C C07 7MT . . . P 6 -0.932 5.437 -11.028 1 172.13 ? C07 7MT 303 H 1 
HETATM 9 C C08 7MT . . . P 6 -0.648 6.817 -11.592 1 172.37 ? C08 7MT 303 H 1 
HETATM 10 C C13 7MT . . . P 6 5.114 8.888 -10.171 1 170.86 ? C13 7MT 303 H 1 
HETATM 11 C C14 7MT . . . P 6 5.186 10.255 -9.972 1 170.72 ? C14 7MT 303 H 1 
HETATM 12 C C15 7MT . . . P 6 4.195 10.892 -9.247 1 170.8 ? C15 7MT 303 H 1 
HETATM 13 C C16 7MT . . . P 6 3.152 10.127 -8.74 1 171.11 ? C16 7MT 303 H 1 
HETATM 14 C C18 7MT . . . P 6 2.039 10.785 -7.94 1 171.19 ? C18 7MT 303 H 1 
HETATM 15 C C19 7MT . . . P 6 -3.367 8.474 -11.112 1 173.73 ? C19 7MT 303 H 1 
HETATM 16 C C20 7MT . . . P 6 -4.657 8.02 -10.908 1 173.83 ? C20 7MT 303 H 1 
HETATM 17 C C22 7MT . . . P 6 -3.997 7.292 -8.74 1 174.23 ? C22 7MT 303 H 1 
HETATM 18 C C24 7MT . . . P 6 -4.316 6.639 -7.403 1 174.54 ? C24 7MT 303 H 1 
HETATM 19 C C29 7MT . . . P 6 -1.015 8.797 -10.249 1 173.1 ? C29 7MT 303 H 1 
HETATM 20 C C30 7MT . . . P 6 3.906 6.701 -9.807 1 171.59 ? C30 7MT 303 H 1 
HETATM 21 N N02 7MT . . . P 6 2.63 6.301 -10.409 1 171.88 ? N02 7MT 303 H 1 
HETATM 22 N N06 7MT . . . P 6 0.224 4.879 -10.305 1 172.03 ? N06 7MT 303 H 1 
HETATM 23 N N09 7MT . . . P 6 -0.072 7.731 -10.598 1 172.58 ? N09 7MT 303 H 1 
HETATM 24 N N17 7MT . . . P 6 3.067 8.802 -8.925 1 171.25 ? N17 7MT 303 H 1 
HETATM 25 N N23 7MT . . . P 6 -2.741 7.726 -8.922 1 174 ? N23 7MT 303 H 1 
HETATM 26 O O25 7MT . . . P 6 -5.487 6.235 -7.225 1 174.44 ? O25 7MT 303 H 1 
HETATM 27 O O26 7MT . . . P 6 -3.384 6.549 -6.563 1 174.86 ? O26 7MT 303 H 1 
HETATM 28 O O27 7MT . . . P 6 2.109 12.029 -7.762 1 171.14 ? O27 7MT 303 H 1 
HETATM 29 O O28 7MT . . . P 6 1.125 10.045 -7.509 1 171.26 ? O28 7MT 303 H 1 
HETATM 30 TB TB 7MT . . . P 6 0.925 6.492 -9.495 1 300 ? TB 7MT 303 H 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#