data_6YXG # _model_server_result.job_id gu2CRzzdrqCobiLlvegTmA _model_server_result.datetime_utc '2025-07-30 19:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6YXG # _exptl.entry_id 6YXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YXG _cell.length_a 74.61 _cell.length_b 100.69 _cell.length_c 110.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 B SG CYS 152 H CYS 162 1_555 B SG CYS 217 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O2 OLA . A OLA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 298 n n C1 O2 OLA sing 299 n n C1 C2 OLA sing 300 n n O2 HO2 OLA sing 301 n n C2 C3 OLA sing 302 n n C2 H21 OLA sing 303 n n C2 H22 OLA sing 304 n n C3 C4 OLA sing 305 n n C3 H31 OLA sing 306 n n C3 H32 OLA sing 307 n n C4 C5 OLA sing 308 n n C4 H41 OLA sing 309 n n C4 H42 OLA sing 310 n n C5 C6 OLA sing 311 n n C5 H51 OLA sing 312 n n C5 H52 OLA sing 313 n n C6 C7 OLA sing 314 n n C6 H61 OLA sing 315 n n C6 H62 OLA sing 316 n n C7 C8 OLA sing 317 n n C7 H71 OLA sing 318 n n C7 H72 OLA sing 319 n n C8 C9 OLA sing 320 n n C8 H81 OLA sing 321 n n C8 H82 OLA sing 322 n n C9 C10 OLA doub 323 z n C9 H9 OLA sing 324 n n C10 C11 OLA sing 325 n n C10 H10 OLA sing 326 n n C11 C12 OLA sing 327 n n C11 H111 OLA sing 328 n n C11 H112 OLA sing 329 n n C12 C13 OLA sing 330 n n C12 H121 OLA sing 331 n n C12 H122 OLA sing 332 n n C13 C14 OLA sing 333 n n C13 H131 OLA sing 334 n n C13 H132 OLA sing 335 n n C14 C15 OLA sing 336 n n C14 H141 OLA sing 337 n n C14 H142 OLA sing 338 n n C15 C16 OLA sing 339 n n C15 H151 OLA sing 340 n n C15 H152 OLA sing 341 n n C16 C17 OLA sing 342 n n C16 H161 OLA sing 343 n n C16 H162 OLA sing 344 n n C17 C18 OLA sing 345 n n C17 H171 OLA sing 346 n n C17 H172 OLA sing 347 n n C18 H181 OLA sing 348 n n C18 H182 OLA sing 349 n n C18 H183 OLA sing 350 n n # _atom_sites.entry_id 6YXG _atom_sites.fract_transf_matrix[1][1] 0.013403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 4 OLA A 1 402 402 OLA OLA . E 5 OLB A 1 403 403 OLB OLB . F 5 OLB A 1 404 404 OLB OLB . G 5 OLB A 1 405 405 OLB OLB . H 5 OLB A 1 406 406 OLB OLB . I 5 OLB A 1 407 407 OLB OLB . J 5 OLB A 1 408 409 OLB OLB . K 5 OLB A 1 409 410 OLB OLB . L 5 OLB A 1 410 411 OLB OLB . M 5 OLB A 1 411 412 OLB OLB . N 5 OLB H 1 301 301 OLB OLB . O 6 7MT H 1 302 2 7MT XO4 . P 6 7MT H 1 303 1 7MT XO4 . Q 7 HOH A 1 501 3 HOH HOH . Q 7 HOH A 2 502 31 HOH HOH . Q 7 HOH A 3 503 22 HOH HOH . Q 7 HOH A 4 504 46 HOH HOH . Q 7 HOH A 5 505 26 HOH HOH . Q 7 HOH A 6 506 6 HOH HOH . Q 7 HOH A 7 507 30 HOH HOH . Q 7 HOH A 8 508 19 HOH HOH . Q 7 HOH A 9 509 29 HOH HOH . Q 7 HOH A 10 510 43 HOH HOH . Q 7 HOH A 11 511 44 HOH HOH . Q 7 HOH A 12 512 39 HOH HOH . R 7 HOH H 1 401 15 HOH HOH . R 7 HOH H 2 402 1 HOH HOH . R 7 HOH H 3 403 24 HOH HOH . R 7 HOH H 4 404 35 HOH HOH . R 7 HOH H 5 405 28 HOH HOH . R 7 HOH H 6 406 5 HOH HOH . R 7 HOH H 7 407 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . D 4 24.107 -38.14 -25.092 1 72.58 ? C1 OLA 402 A 1 HETATM 2 O O1 OLA . . . D 4 23.501 -37.312 -24.418 1 72.24 ? O1 OLA 402 A 1 HETATM 3 O O2 OLA . . . D 4 23.981 -38.254 -26.404 1 72.76 ? O2 OLA 402 A 1 HETATM 4 C C2 OLA . . . D 4 25.059 -39.16 -24.53 1 72.37 ? C2 OLA 402 A 1 HETATM 5 C C3 OLA . . . D 4 25.611 -38.911 -23.126 1 72.16 ? C3 OLA 402 A 1 HETATM 6 C C4 OLA . . . D 4 26.679 -39.934 -22.736 1 72.26 ? C4 OLA 402 A 1 HETATM 7 C C5 OLA . . . D 4 27.775 -40.21 -23.793 1 72.39 ? C5 OLA 402 A 1 HETATM 8 C C6 OLA . . . D 4 27.918 -41.648 -24.331 1 72.19 ? C6 OLA 402 A 1 HETATM 9 C C7 OLA . . . D 4 29.113 -41.869 -25.284 1 71.87 ? C7 OLA 402 A 1 HETATM 10 C C8 OLA . . . D 4 29.746 -43.299 -25.284 1 71.38 ? C8 OLA 402 A 1 HETATM 11 C C9 OLA . . . D 4 28.731 -44.418 -25.35 1 70.86 ? C9 OLA 402 A 1 HETATM 12 C C10 OLA . . . D 4 28.604 -45.377 -26.261 1 70.02 ? C10 OLA 402 A 1 HETATM 13 C C11 OLA . . . D 4 29.49 -45.607 -27.44 1 69.27 ? C11 OLA 402 A 1 HETATM 14 C C12 OLA . . . D 4 28.895 -45.208 -28.8 1 67.88 ? C12 OLA 402 A 1 HETATM 15 C C13 OLA . . . D 4 27.698 -46.013 -29.262 1 66.4 ? C13 OLA 402 A 1 HETATM 16 C C14 OLA . . . D 4 27.713 -46.251 -30.762 1 65.72 ? C14 OLA 402 A 1 HETATM 17 C C15 OLA . . . D 4 26.619 -47.176 -31.293 1 65.58 ? C15 OLA 402 A 1 HETATM 18 C C16 OLA . . . D 4 26.385 -48.542 -30.613 1 65.21 ? C16 OLA 402 A 1 HETATM 19 C C17 OLA . . . D 4 24.886 -48.89 -30.492 1 64.7 ? C17 OLA 402 A 1 HETATM 20 C C18 OLA . . . D 4 24.569 -50.384 -30.565 1 64.42 ? C18 OLA 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #