data_6YXG # _model_server_result.job_id zU5Z5ft5rzWKD9bm4I12IQ _model_server_result.datetime_utc '2025-07-30 19:45:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6YXG # _exptl.entry_id 6YXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YXG _cell.length_a 74.61 _cell.length_b 100.69 _cell.length_c 110.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 B SG CYS 152 H CYS 162 1_555 B SG CYS 217 H CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A NE2 HIS 108 A HIS 202 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A NE2 HIS 254 A HIS 348 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A NE2 HIS 258 A HIS 352 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc4 C ZN ZN . A ZN 401 1_555 D O2 OLA . A OLA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 351 n n C1 O20 OLB sing 352 n n C2 C1 OLB sing 353 n n C3 C2 OLB sing 354 n n C4 C3 OLB sing 355 n n C5 C4 OLB sing 356 n n C5 C6 OLB sing 357 n n O20 C21 OLB sing 358 n n C21 C22 OLB sing 359 n n C22 C24 OLB sing 360 n n O23 C22 OLB sing 361 n n C24 O25 OLB sing 362 n n C6 C7 OLB sing 363 n n C7 C8 OLB sing 364 n n C8 C9 OLB sing 365 n n C9 C10 OLB doub 366 z n C10 C11 OLB sing 367 n n C2 H2 OLB sing 368 n n C2 H2A OLB sing 369 n n C3 H3 OLB sing 370 n n C3 H3A OLB sing 371 n n C4 H4 OLB sing 372 n n C4 H4A OLB sing 373 n n C5 H5 OLB sing 374 n n C5 H5A OLB sing 375 n n C21 H21 OLB sing 376 n n C21 H21A OLB sing 377 n n C22 H22 OLB sing 378 n n O23 HO23 OLB sing 379 n n C24 H24 OLB sing 380 n n C24 H24A OLB sing 381 n n O25 HO25 OLB sing 382 n n C6 H16 OLB sing 383 n n C6 H17 OLB sing 384 n n C7 H18 OLB sing 385 n n C7 H19 OLB sing 386 n n C8 H20 OLB sing 387 n n C8 H211 OLB sing 388 n n C9 H221 OLB sing 389 n n C10 H23 OLB sing 390 n n C11 H241 OLB sing 391 n n C11 H25 OLB sing 392 n n C11 C12 OLB sing 393 n n C12 H26 OLB sing 394 n n C12 C13 OLB sing 395 n n C12 H27 OLB sing 396 n n C13 C14 OLB sing 397 n n C13 H28 OLB sing 398 n n C13 H29 OLB sing 399 n n C14 H30 OLB sing 400 n n C14 H31 OLB sing 401 n n C14 C15 OLB sing 402 n n C15 C16 OLB sing 403 n n C15 H32 OLB sing 404 n n C15 H33 OLB sing 405 n n C16 H34 OLB sing 406 n n C16 H35 OLB sing 407 n n C16 C17 OLB sing 408 n n C17 C18 OLB sing 409 n n C17 H36 OLB sing 410 n n C17 H37 OLB sing 411 n n C18 H38 OLB sing 412 n n C18 H39 OLB sing 413 n n C18 H40 OLB sing 414 n n # _atom_sites.entry_id 6YXG _atom_sites.fract_transf_matrix[1][1] 0.013403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 4 OLA A 1 402 402 OLA OLA . E 5 OLB A 1 403 403 OLB OLB . F 5 OLB A 1 404 404 OLB OLB . G 5 OLB A 1 405 405 OLB OLB . H 5 OLB A 1 406 406 OLB OLB . I 5 OLB A 1 407 407 OLB OLB . J 5 OLB A 1 408 409 OLB OLB . K 5 OLB A 1 409 410 OLB OLB . L 5 OLB A 1 410 411 OLB OLB . M 5 OLB A 1 411 412 OLB OLB . N 5 OLB H 1 301 301 OLB OLB . O 6 7MT H 1 302 2 7MT XO4 . P 6 7MT H 1 303 1 7MT XO4 . Q 7 HOH A 1 501 3 HOH HOH . Q 7 HOH A 2 502 31 HOH HOH . Q 7 HOH A 3 503 22 HOH HOH . Q 7 HOH A 4 504 46 HOH HOH . Q 7 HOH A 5 505 26 HOH HOH . Q 7 HOH A 6 506 6 HOH HOH . Q 7 HOH A 7 507 30 HOH HOH . Q 7 HOH A 8 508 19 HOH HOH . Q 7 HOH A 9 509 29 HOH HOH . Q 7 HOH A 10 510 43 HOH HOH . Q 7 HOH A 11 511 44 HOH HOH . Q 7 HOH A 12 512 39 HOH HOH . R 7 HOH H 1 401 15 HOH HOH . R 7 HOH H 2 402 1 HOH HOH . R 7 HOH H 3 403 24 HOH HOH . R 7 HOH H 4 404 35 HOH HOH . R 7 HOH H 5 405 28 HOH HOH . R 7 HOH H 6 406 5 HOH HOH . R 7 HOH H 7 407 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . F 5 38.659 -62.838 -31.234 0 97.33 ? C1 OLB 404 A 1 HETATM 2 C C2 OLB . . . F 5 37.319 -62.43 -30.699 0 95.79 ? C2 OLB 404 A 1 HETATM 3 C C3 OLB . . . F 5 37.157 -60.924 -30.543 0 92.73 ? C3 OLB 404 A 1 HETATM 4 C C4 OLB . . . F 5 36.84 -60.215 -31.851 0 89.3 ? C4 OLB 404 A 1 HETATM 5 C C5 OLB . . . F 5 36.397 -58.768 -31.683 1 94.8 ? C5 OLB 404 A 1 HETATM 6 O O19 OLB . . . F 5 39.679 -62.835 -30.598 0 97.49 ? O19 OLB 404 A 1 HETATM 7 O O20 OLB . . . F 5 38.578 -63.226 -32.511 0 98.96 ? O20 OLB 404 A 1 HETATM 8 C C21 OLB . . . F 5 39.777 -63.747 -33.131 0 100.36 ? C21 OLB 404 A 1 HETATM 9 C C22 OLB . . . F 5 39.428 -63.855 -34.595 0 101.15 ? C22 OLB 404 A 1 HETATM 10 O O23 OLB . . . F 5 39.319 -62.544 -35.156 0 100.38 ? O23 OLB 404 A 1 HETATM 11 C C24 OLB . . . F 5 40.437 -64.665 -35.377 0 103.94 ? C24 OLB 404 A 1 HETATM 12 O O25 OLB . . . F 5 40.043 -64.786 -36.737 0 105.55 ? O25 OLB 404 A 1 HETATM 13 C C6 OLB . . . F 5 35.19 -58.592 -30.779 1 95.2 ? C6 OLB 404 A 1 HETATM 14 C C7 OLB . . . F 5 34.724 -57.152 -30.64 1 95.8 ? C7 OLB 404 A 1 HETATM 15 C C8 OLB . . . F 5 33.418 -56.959 -29.858 1 96.14 ? C8 OLB 404 A 1 HETATM 16 C C9 OLB . . . F 5 33.535 -57.245 -28.387 1 96.34 ? C9 OLB 404 A 1 HETATM 17 C C10 OLB . . . F 5 32.905 -56.603 -27.419 1 96.2 ? C10 OLB 404 A 1 HETATM 18 C C11 OLB . . . F 5 31.947 -55.458 -27.59 1 95.94 ? C11 OLB 404 A 1 HETATM 19 C C12 OLB . . . F 5 30.513 -55.852 -27.274 1 95.67 ? C12 OLB 404 A 1 HETATM 20 C C13 OLB . . . F 5 29.694 -56.192 -28.49 1 95.81 ? C13 OLB 404 A 1 HETATM 21 C C14 OLB . . . F 5 28.43 -56.978 -28.179 1 96.12 ? C14 OLB 404 A 1 HETATM 22 C C15 OLB . . . F 5 27.462 -57.052 -29.347 1 96.29 ? C15 OLB 404 A 1 HETATM 23 C C16 OLB . . . F 5 26.953 -55.694 -29.776 1 96.46 ? C16 OLB 404 A 1 HETATM 24 C C17 OLB . . . F 5 26.102 -55.048 -28.698 1 96.86 ? C17 OLB 404 A 1 HETATM 25 C C18 OLB . . . F 5 25.7 -53.639 -29.035 1 97.04 ? C18 OLB 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #