data_6YXH
#
_model_server_result.job_id            6Rp83AYLZu7NG5rzN4AX9w 
_model_server_result.datetime_utc      '2024-11-04 22:42:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    6YXH 
#
_exptl.entry_id    6YXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YXH 
_cell.length_a            61.47 
_cell.length_b            69.97 
_cell.length_c            259.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 19 A ASP 19 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc2 A OD1 ASP 19 A ASP 19 1_555 K CA CA . A CA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 A O TRP 20 A TRP 20 1_555 K CA CA . A CA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc4 A O GLU 22 A GLU 22 1_555 K CA CA . A CA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc5 A OD1 ASN 24 A ASN 24 1_555 K CA CA . A CA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc6 A OE2 GLU 33 A GLU 33 1_555 K CA CA . A CA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc7 A OE1 GLU 60 A GLU 60 1_555 M MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc8 A NE2 HIS 81 A HIS 81 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc9 A NE2 HIS 217 A HIS 217 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc10 A NE2 HIS 221 A HIS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc11 A OD2 ASP 246 A ASP 246 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc12 C O1 SO4 . A SO4 402 1_555 M MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc13 I NA NA . A NA 408 1_555 N O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YXH 
_atom_sites.fract_transf_matrix[1][1]    0.016268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 SO4 A 1 402 402 SO4 SO4 . 
D 3 SO4 A 1 403 403 SO4 SO4 . 
E 3 SO4 A 1 404 404 SO4 SO4 . 
F 3 SO4 A 1 405 405 SO4 SO4 . 
G 3 SO4 A 1 406 406 SO4 SO4 . 
H 3 SO4 A 1 407 407 SO4 SO4 . 
I 4 NA A 1 408 409 NA NA . 
J 4 NA A 1 409 410 NA NA . 
K 5 CA A 1 410 412 CA CA . 
L 6 MG A 1 411 413 MG MG . 
M 6 MG A 1 412 414 MG MG . 
N 7 HOH A 1 501 36 HOH HOH . 
N 7 HOH A 2 502 37 HOH HOH . 
N 7 HOH A 3 503 7 HOH HOH . 
N 7 HOH A 4 504 18 HOH HOH . 
N 7 HOH A 5 505 34 HOH HOH . 
N 7 HOH A 6 506 59 HOH HOH . 
N 7 HOH A 7 507 1 HOH HOH . 
N 7 HOH A 8 508 48 HOH HOH . 
N 7 HOH A 9 509 19 HOH HOH . 
N 7 HOH A 10 510 44 HOH HOH . 
N 7 HOH A 11 511 25 HOH HOH . 
N 7 HOH A 12 512 26 HOH HOH . 
N 7 HOH A 13 513 10 HOH HOH . 
N 7 HOH A 14 514 51 HOH HOH . 
N 7 HOH A 15 515 45 HOH HOH . 
N 7 HOH A 16 516 21 HOH HOH . 
N 7 HOH A 17 517 27 HOH HOH . 
N 7 HOH A 18 518 15 HOH HOH . 
N 7 HOH A 19 519 3 HOH HOH . 
N 7 HOH A 20 520 35 HOH HOH . 
N 7 HOH A 21 521 31 HOH HOH . 
N 7 HOH A 22 522 9 HOH HOH . 
N 7 HOH A 23 523 56 HOH HOH . 
N 7 HOH A 24 524 30 HOH HOH . 
N 7 HOH A 25 525 39 HOH HOH . 
N 7 HOH A 26 526 54 HOH HOH . 
N 7 HOH A 27 527 33 HOH HOH . 
N 7 HOH A 28 528 29 HOH HOH . 
N 7 HOH A 29 529 2 HOH HOH . 
N 7 HOH A 30 530 12 HOH HOH . 
N 7 HOH A 31 531 57 HOH HOH . 
N 7 HOH A 32 532 14 HOH HOH . 
N 7 HOH A 33 533 32 HOH HOH . 
N 7 HOH A 34 534 55 HOH HOH . 
N 7 HOH A 35 535 6 HOH HOH . 
N 7 HOH A 36 536 40 HOH HOH . 
N 7 HOH A 37 537 47 HOH HOH . 
N 7 HOH A 38 538 23 HOH HOH . 
N 7 HOH A 39 539 11 HOH HOH . 
N 7 HOH A 40 540 42 HOH HOH . 
N 7 HOH A 41 541 53 HOH HOH . 
N 7 HOH A 42 542 17 HOH HOH . 
N 7 HOH A 43 543 24 HOH HOH . 
N 7 HOH A 44 544 43 HOH HOH . 
N 7 HOH A 45 545 58 HOH HOH . 
N 7 HOH A 46 546 4 HOH HOH . 
N 7 HOH A 47 547 50 HOH HOH . 
N 7 HOH A 48 548 8 HOH HOH . 
N 7 HOH A 49 549 41 HOH HOH . 
N 7 HOH A 50 550 49 HOH HOH . 
N 7 HOH A 51 551 28 HOH HOH . 
N 7 HOH A 52 552 13 HOH HOH . 
N 7 HOH A 53 553 38 HOH HOH . 
N 7 HOH A 54 554 52 HOH HOH . 
N 7 HOH A 55 555 5 HOH HOH . 
N 7 HOH A 56 556 60 HOH HOH . 
N 7 HOH A 57 557 46 HOH HOH . 
N 7 HOH A 58 558 16 HOH HOH . 
N 7 HOH A 59 559 22 HOH HOH . 
N 7 HOH A 60 560 20 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               26.419 
_atom_site.Cartn_y               13.31 
_atom_site.Cartn_z               -65.468 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.88 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           408 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#