data_6YXT
#
_model_server_result.job_id            i_K_EJVP3njEj7ugFnB_oQ 
_model_server_result.datetime_utc      '2025-01-11 15:59:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6YXT 
#
_exptl.entry_id    6YXT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6YXT 
_cell.length_a            66.45 
_cell.length_b            68 
_cell.length_c            105.11 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 235 A ASN 293 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc2 A OD1 ASP 247 A ASP 305 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc3 A OD2 ASP 247 A ASP 305 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc4 A OD2 ASP 247 A ASP 305 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc5 A OE2 GLU 249 A GLU 307 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 D O2B ADP . A ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc7 B MG MG . A MG 501 1_555 D O3B ADP . A ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc8 B MG MG . A MG 501 1_555 H O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc9 B MG MG . A MG 501 1_555 H O HOH . A HOH 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc10 C MG MG . A MG 502 1_555 D O2A ADP . A ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 C MG MG . A MG 502 1_555 D O3B ADP . A ADP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc12 C MG MG . A MG 502 1_555 H O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc13 C MG MG . A MG 502 1_555 H O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6YXT 
_atom_sites.fract_transf_matrix[1][1]    0.015049 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009514 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 1 MG MG . 
C 2 MG A 1 502 2 MG MG . 
D 3 ADP A 1 503 1 ADP ADP . 
E 4 EDO A 1 504 2 EDO EDO . 
F 4 EDO A 1 505 3 EDO EDO . 
G 4 EDO A 1 506 9 EDO EDO . 
H 5 HOH A 1 601 159 HOH HOH . 
H 5 HOH A 2 602 160 HOH HOH . 
H 5 HOH A 3 603 62 HOH HOH . 
H 5 HOH A 4 604 127 HOH HOH . 
H 5 HOH A 5 605 157 HOH HOH . 
H 5 HOH A 6 606 68 HOH HOH . 
H 5 HOH A 7 607 95 HOH HOH . 
H 5 HOH A 8 608 138 HOH HOH . 
H 5 HOH A 9 609 81 HOH HOH . 
H 5 HOH A 10 610 38 HOH HOH . 
H 5 HOH A 11 611 17 HOH HOH . 
H 5 HOH A 12 612 7 HOH HOH . 
H 5 HOH A 13 613 45 HOH HOH . 
H 5 HOH A 14 614 107 HOH HOH . 
H 5 HOH A 15 615 97 HOH HOH . 
H 5 HOH A 16 616 56 HOH HOH . 
H 5 HOH A 17 617 149 HOH HOH . 
H 5 HOH A 18 618 29 HOH HOH . 
H 5 HOH A 19 619 101 HOH HOH . 
H 5 HOH A 20 620 96 HOH HOH . 
H 5 HOH A 21 621 158 HOH HOH . 
H 5 HOH A 22 622 141 HOH HOH . 
H 5 HOH A 23 623 99 HOH HOH . 
H 5 HOH A 24 624 4 HOH HOH . 
H 5 HOH A 25 625 93 HOH HOH . 
H 5 HOH A 26 626 36 HOH HOH . 
H 5 HOH A 27 627 19 HOH HOH . 
H 5 HOH A 28 628 103 HOH HOH . 
H 5 HOH A 29 629 40 HOH HOH . 
H 5 HOH A 30 630 102 HOH HOH . 
H 5 HOH A 31 631 142 HOH HOH . 
H 5 HOH A 32 632 24 HOH HOH . 
H 5 HOH A 33 633 11 HOH HOH . 
H 5 HOH A 34 634 44 HOH HOH . 
H 5 HOH A 35 635 43 HOH HOH . 
H 5 HOH A 36 636 23 HOH HOH . 
H 5 HOH A 37 637 113 HOH HOH . 
H 5 HOH A 38 638 79 HOH HOH . 
H 5 HOH A 39 639 144 HOH HOH . 
H 5 HOH A 40 640 18 HOH HOH . 
H 5 HOH A 41 641 134 HOH HOH . 
H 5 HOH A 42 642 106 HOH HOH . 
H 5 HOH A 43 643 50 HOH HOH . 
H 5 HOH A 44 644 1 HOH HOH . 
H 5 HOH A 45 645 47 HOH HOH . 
H 5 HOH A 46 646 33 HOH HOH . 
H 5 HOH A 47 647 21 HOH HOH . 
H 5 HOH A 48 648 71 HOH HOH . 
H 5 HOH A 49 649 94 HOH HOH . 
H 5 HOH A 50 650 98 HOH HOH . 
H 5 HOH A 51 651 121 HOH HOH . 
H 5 HOH A 52 652 64 HOH HOH . 
H 5 HOH A 53 653 155 HOH HOH . 
H 5 HOH A 54 654 37 HOH HOH . 
H 5 HOH A 55 655 90 HOH HOH . 
H 5 HOH A 56 656 119 HOH HOH . 
H 5 HOH A 57 657 22 HOH HOH . 
H 5 HOH A 58 658 139 HOH HOH . 
H 5 HOH A 59 659 8 HOH HOH . 
H 5 HOH A 60 660 74 HOH HOH . 
H 5 HOH A 61 661 140 HOH HOH . 
H 5 HOH A 62 662 49 HOH HOH . 
H 5 HOH A 63 663 48 HOH HOH . 
H 5 HOH A 64 664 109 HOH HOH . 
H 5 HOH A 65 665 137 HOH HOH . 
H 5 HOH A 66 666 154 HOH HOH . 
H 5 HOH A 67 667 77 HOH HOH . 
H 5 HOH A 68 668 153 HOH HOH . 
H 5 HOH A 69 669 42 HOH HOH . 
H 5 HOH A 70 670 135 HOH HOH . 
H 5 HOH A 71 671 34 HOH HOH . 
H 5 HOH A 72 672 80 HOH HOH . 
H 5 HOH A 73 673 30 HOH HOH . 
H 5 HOH A 74 674 78 HOH HOH . 
H 5 HOH A 75 675 120 HOH HOH . 
H 5 HOH A 76 676 41 HOH HOH . 
H 5 HOH A 77 677 46 HOH HOH . 
H 5 HOH A 78 678 70 HOH HOH . 
H 5 HOH A 79 679 87 HOH HOH . 
H 5 HOH A 80 680 32 HOH HOH . 
H 5 HOH A 81 681 91 HOH HOH . 
H 5 HOH A 82 682 3 HOH HOH . 
H 5 HOH A 83 683 26 HOH HOH . 
H 5 HOH A 84 684 152 HOH HOH . 
H 5 HOH A 85 685 60 HOH HOH . 
H 5 HOH A 86 686 9 HOH HOH . 
H 5 HOH A 87 687 27 HOH HOH . 
H 5 HOH A 88 688 31 HOH HOH . 
H 5 HOH A 89 689 16 HOH HOH . 
H 5 HOH A 90 690 14 HOH HOH . 
H 5 HOH A 91 691 114 HOH HOH . 
H 5 HOH A 92 692 28 HOH HOH . 
H 5 HOH A 93 693 25 HOH HOH . 
H 5 HOH A 94 694 65 HOH HOH . 
H 5 HOH A 95 695 156 HOH HOH . 
H 5 HOH A 96 696 115 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -10.472 
_atom_site.Cartn_y               -13.393 
_atom_site.Cartn_z               7.129 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#