data_6YXV
#
_model_server_result.job_id            K3z3rNm-8jVOSbzK3O1YgA 
_model_server_result.datetime_utc      '2024-12-26 12:30:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6yxv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":701}' 
#
_entry.id    6YXV 
#
_exptl.entry_id    6YXV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-methyl-~{N}-[3-[(~{E})-[2-phenylazanyl-5-(trifluoromethyl)pyrimidin-4-yl]iminomethyl]pyridin-2-yl]methanesulfonamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.34 
_cell.angle_gamma         90 
_cell.entry_id            6YXV 
_cell.length_a            118.05 
_cell.length_b            77.127 
_cell.length_c            174.934 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6YXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,J 1 1 
B,F,G,K 2 1 
C,H,L 3 1 
D,I,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 A CYS 456 1_555 A SG CYS 52 A CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 B SG CYS 49 B CYS 456 1_555 B SG CYS 52 B CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 C SG CYS 49 C CYS 456 1_555 C SG CYS 52 C CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 D SG CYS 49 D CYS 456 1_555 D SG CYS 52 D CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C19 H17 F3 N6 O2 S' 
_chem_comp.formula_weight    450.437 
_chem_comp.id                Q2H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-methyl-~{N}-[3-[(~{E})-[2-phenylazanyl-5-(trifluoromethyl)pyrimidin-4-yl]iminomethyl]pyridin-2-yl]methanesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C31 S28 Q2H sing 277 n n 
O29 S28 Q2H doub 278 n n 
C27 N26 Q2H sing 279 n n 
S28 N26 Q2H sing 280 n n 
S28 O30 Q2H doub 281 n n 
N26 C6 Q2H sing 282 n n 
N5 C6 Q2H doub 283 n y 
N5 C4 Q2H sing 284 n y 
C6 C1 Q2H sing 285 n y 
C19 C20 Q2H doub 286 n y 
C19 C23 Q2H sing 287 n y 
C20 C21 Q2H sing 288 n y 
C7 C1 Q2H sing 289 n n 
C7 N8 Q2H doub 290 n n 
C4 C3 Q2H doub 291 n y 
C1 C2 Q2H doub 292 n y 
F18 C15 Q2H sing 293 n n 
C23 C24 Q2H doub 294 n y 
C21 N25 Q2H sing 295 n n 
C21 C22 Q2H doub 296 n y 
N8 C13 Q2H sing 297 n n 
N25 C9 Q2H sing 298 n n 
N14 C9 Q2H doub 299 n y 
N14 C13 Q2H sing 300 n y 
C9 N10 Q2H sing 301 n y 
C13 C12 Q2H doub 302 n y 
C24 C22 Q2H sing 303 n y 
N10 C11 Q2H doub 304 n y 
C12 C11 Q2H sing 305 n y 
C12 C15 Q2H sing 306 n n 
C2 C3 Q2H sing 307 n y 
C15 F16 Q2H sing 308 n n 
C15 F17 Q2H sing 309 n n 
C2 H1 Q2H sing 310 n n 
C3 H2 Q2H sing 311 n n 
C7 H3 Q2H sing 312 n n 
C11 H4 Q2H sing 313 n n 
C19 H5 Q2H sing 314 n n 
C20 H6 Q2H sing 315 n n 
C22 H7 Q2H sing 316 n n 
C24 H8 Q2H sing 317 n n 
N25 H9 Q2H sing 318 n n 
C27 H10 Q2H sing 319 n n 
C27 H11 Q2H sing 320 n n 
C27 H12 Q2H sing 321 n n 
C31 H13 Q2H sing 322 n n 
C31 H14 Q2H sing 323 n n 
C31 H15 Q2H sing 324 n n 
C4 H16 Q2H sing 325 n n 
C23 H17 Q2H sing 326 n n 
#
_atom_sites.entry_id                     6YXV 
_atom_sites.fract_transf_matrix[1][1]    0.008471 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001699 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Q2H A 1 701 701 Q2H INH . 
F 2 Q2H B 1 701 701 Q2H INH . 
G 3 SO4 B 1 702 1 SO4 SO4 . 
H 2 Q2H C 1 701 701 Q2H INH . 
I 2 Q2H D 1 701 701 Q2H INH . 
J 4 HOH A 1 801 50 HOH HOH . 
J 4 HOH A 2 802 125 HOH HOH . 
J 4 HOH A 3 803 24 HOH HOH . 
J 4 HOH A 4 804 18 HOH HOH . 
J 4 HOH A 5 805 112 HOH HOH . 
J 4 HOH A 6 806 67 HOH HOH . 
J 4 HOH A 7 807 31 HOH HOH . 
J 4 HOH A 8 808 43 HOH HOH . 
J 4 HOH A 9 809 51 HOH HOH . 
J 4 HOH A 10 810 59 HOH HOH . 
J 4 HOH A 11 811 21 HOH HOH . 
J 4 HOH A 12 812 79 HOH HOH . 
J 4 HOH A 13 813 114 HOH HOH . 
J 4 HOH A 14 814 54 HOH HOH . 
J 4 HOH A 15 815 23 HOH HOH . 
J 4 HOH A 16 816 20 HOH HOH . 
J 4 HOH A 17 817 17 HOH HOH . 
J 4 HOH A 18 818 70 HOH HOH . 
J 4 HOH A 19 819 4 HOH HOH . 
J 4 HOH A 20 820 136 HOH HOH . 
J 4 HOH A 21 821 72 HOH HOH . 
J 4 HOH A 22 822 26 HOH HOH . 
J 4 HOH A 23 823 32 HOH HOH . 
J 4 HOH A 24 824 111 HOH HOH . 
J 4 HOH A 25 825 11 HOH HOH . 
J 4 HOH A 26 826 53 HOH HOH . 
J 4 HOH A 27 827 113 HOH HOH . 
J 4 HOH A 28 828 94 HOH HOH . 
J 4 HOH A 29 829 38 HOH HOH . 
J 4 HOH A 30 830 101 HOH HOH . 
J 4 HOH A 31 831 90 HOH HOH . 
J 4 HOH A 32 832 42 HOH HOH . 
J 4 HOH A 33 833 98 HOH HOH . 
K 4 HOH B 1 801 39 HOH HOH . 
K 4 HOH B 2 802 71 HOH HOH . 
K 4 HOH B 3 803 96 HOH HOH . 
K 4 HOH B 4 804 16 HOH HOH . 
K 4 HOH B 5 805 68 HOH HOH . 
K 4 HOH B 6 806 116 HOH HOH . 
K 4 HOH B 7 807 122 HOH HOH . 
K 4 HOH B 8 808 61 HOH HOH . 
K 4 HOH B 9 809 6 HOH HOH . 
K 4 HOH B 10 810 137 HOH HOH . 
K 4 HOH B 11 811 60 HOH HOH . 
K 4 HOH B 12 812 28 HOH HOH . 
K 4 HOH B 13 813 103 HOH HOH . 
K 4 HOH B 14 814 97 HOH HOH . 
K 4 HOH B 15 815 47 HOH HOH . 
K 4 HOH B 16 816 22 HOH HOH . 
K 4 HOH B 17 817 1 HOH HOH . 
K 4 HOH B 18 818 33 HOH HOH . 
K 4 HOH B 19 819 100 HOH HOH . 
K 4 HOH B 20 820 13 HOH HOH . 
K 4 HOH B 21 821 77 HOH HOH . 
K 4 HOH B 22 822 30 HOH HOH . 
K 4 HOH B 23 823 3 HOH HOH . 
K 4 HOH B 24 824 91 HOH HOH . 
K 4 HOH B 25 825 9 HOH HOH . 
K 4 HOH B 26 826 102 HOH HOH . 
K 4 HOH B 27 827 35 HOH HOH . 
K 4 HOH B 28 828 84 HOH HOH . 
K 4 HOH B 29 829 76 HOH HOH . 
K 4 HOH B 30 830 119 HOH HOH . 
K 4 HOH B 31 831 124 HOH HOH . 
K 4 HOH B 32 832 108 HOH HOH . 
K 4 HOH B 33 833 19 HOH HOH . 
K 4 HOH B 34 834 74 HOH HOH . 
K 4 HOH B 35 835 41 HOH HOH . 
K 4 HOH B 36 836 80 HOH HOH . 
K 4 HOH B 37 837 130 HOH HOH . 
K 4 HOH B 38 838 118 HOH HOH . 
K 4 HOH B 39 839 46 HOH HOH . 
K 4 HOH B 40 840 129 HOH HOH . 
K 4 HOH B 41 841 25 HOH HOH . 
K 4 HOH B 42 842 95 HOH HOH . 
K 4 HOH B 43 843 75 HOH HOH . 
K 4 HOH B 44 844 37 HOH HOH . 
K 4 HOH B 45 845 93 HOH HOH . 
K 4 HOH B 46 846 107 HOH HOH . 
L 4 HOH C 1 801 128 HOH HOH . 
L 4 HOH C 2 802 105 HOH HOH . 
L 4 HOH C 3 803 131 HOH HOH . 
L 4 HOH C 4 804 88 HOH HOH . 
L 4 HOH C 5 805 133 HOH HOH . 
L 4 HOH C 6 806 40 HOH HOH . 
L 4 HOH C 7 807 34 HOH HOH . 
L 4 HOH C 8 808 87 HOH HOH . 
L 4 HOH C 9 809 12 HOH HOH . 
L 4 HOH C 10 810 81 HOH HOH . 
L 4 HOH C 11 811 56 HOH HOH . 
L 4 HOH C 12 812 69 HOH HOH . 
L 4 HOH C 13 813 55 HOH HOH . 
L 4 HOH C 14 814 99 HOH HOH . 
L 4 HOH C 15 815 45 HOH HOH . 
L 4 HOH C 16 816 44 HOH HOH . 
L 4 HOH C 17 817 65 HOH HOH . 
L 4 HOH C 18 818 36 HOH HOH . 
L 4 HOH C 19 819 126 HOH HOH . 
L 4 HOH C 20 820 2 HOH HOH . 
L 4 HOH C 21 821 73 HOH HOH . 
L 4 HOH C 22 822 138 HOH HOH . 
L 4 HOH C 23 823 85 HOH HOH . 
L 4 HOH C 24 824 83 HOH HOH . 
L 4 HOH C 25 825 58 HOH HOH . 
L 4 HOH C 26 826 7 HOH HOH . 
L 4 HOH C 27 827 48 HOH HOH . 
L 4 HOH C 28 828 27 HOH HOH . 
L 4 HOH C 29 829 82 HOH HOH . 
L 4 HOH C 30 830 86 HOH HOH . 
M 4 HOH D 1 801 127 HOH HOH . 
M 4 HOH D 2 802 8 HOH HOH . 
M 4 HOH D 3 803 64 HOH HOH . 
M 4 HOH D 4 804 123 HOH HOH . 
M 4 HOH D 5 805 92 HOH HOH . 
M 4 HOH D 6 806 49 HOH HOH . 
M 4 HOH D 7 807 104 HOH HOH . 
M 4 HOH D 8 808 15 HOH HOH . 
M 4 HOH D 9 809 106 HOH HOH . 
M 4 HOH D 10 810 29 HOH HOH . 
M 4 HOH D 11 811 134 HOH HOH . 
M 4 HOH D 12 812 66 HOH HOH . 
M 4 HOH D 13 813 5 HOH HOH . 
M 4 HOH D 14 814 110 HOH HOH . 
M 4 HOH D 15 815 63 HOH HOH . 
M 4 HOH D 16 816 10 HOH HOH . 
M 4 HOH D 17 817 117 HOH HOH . 
M 4 HOH D 18 818 78 HOH HOH . 
M 4 HOH D 19 819 14 HOH HOH . 
M 4 HOH D 20 820 57 HOH HOH . 
M 4 HOH D 21 821 121 HOH HOH . 
M 4 HOH D 22 822 135 HOH HOH . 
M 4 HOH D 23 823 89 HOH HOH . 
M 4 HOH D 24 824 52 HOH HOH . 
M 4 HOH D 25 825 120 HOH HOH . 
M 4 HOH D 26 826 109 HOH HOH . 
M 4 HOH D 27 827 62 HOH HOH . 
M 4 HOH D 28 828 115 HOH HOH . 
M 4 HOH D 29 829 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Q2H . . . I 2 12.343 25.431 71.148 1 61.61 ? C1 Q2H 701 D 1 
HETATM 2 C C2 Q2H . . . I 2 11.587 24.987 70.069 1 62.36 ? C2 Q2H 701 D 1 
HETATM 3 C C3 Q2H . . . I 2 10.301 25.454 69.856 1 62.82 ? C3 Q2H 701 D 1 
HETATM 4 C C7 Q2H . . . I 2 13.75 24.919 71.351 1 58.89 ? C7 Q2H 701 D 1 
HETATM 5 C C9 Q2H . . . I 2 17.666 23.856 71.586 1 53.03 ? C9 Q2H 701 D 1 
HETATM 6 C C11 Q2H . . . I 2 18.442 25.88 70.916 1 52.41 ? C11 Q2H 701 D 1 
HETATM 7 C C12 Q2H . . . I 2 17.172 26.313 70.58 1 53.8 ? C12 Q2H 701 D 1 
HETATM 8 C C13 Q2H . . . I 2 16.107 25.346 70.814 1 54.42 ? C13 Q2H 701 D 1 
HETATM 9 C C15 Q2H . . . I 2 16.991 27.735 70.091 1 55.33 ? C15 Q2H 701 D 1 
HETATM 10 C C19 Q2H . . . I 2 17.319 19.072 72.679 1 52.15 ? C19 Q2H 701 D 1 
HETATM 11 C C20 Q2H . . . I 2 17.961 20.279 72.462 1 52.43 ? C20 Q2H 701 D 1 
HETATM 12 C C21 Q2H . . . I 2 17.236 21.467 72.48 1 53.06 ? C21 Q2H 701 D 1 
HETATM 13 C C22 Q2H . . . I 2 15.876 21.431 72.762 1 53.2 ? C22 Q2H 701 D 1 
HETATM 14 C C24 Q2H . . . I 2 15.246 20.215 72.97 1 53.29 ? C24 Q2H 701 D 1 
HETATM 15 N N25 Q2H . . . I 2 17.951 22.647 72.152 1 53.26 ? N25 Q2H 701 D 1 
HETATM 16 N N26 Q2H . . . I 2 12.238 26.814 73.218 1 64.75 ? N26 Q2H 701 D 1 
HETATM 17 C C27 Q2H . . . I 2 12.118 25.922 74.378 1 65.13 ? C27 Q2H 701 D 1 
HETATM 18 C C31 Q2H . . . I 2 11.673 29.366 73.95 1 64.78 ? C31 Q2H 701 D 1 
HETATM 19 C C4 Q2H . . . I 2 9.773 26.369 70.732 1 63.08 ? C4 Q2H 701 D 1 
HETATM 20 N N5 Q2H . . . I 2 10.425 26.821 71.809 1 63.4 ? N5 Q2H 701 D 1 
HETATM 21 C C6 Q2H . . . I 2 11.667 26.343 71.99 1 63.44 ? C6 Q2H 701 D 1 
HETATM 22 N N8 Q2H . . . I 2 14.812 25.684 70.711 1 56.51 ? N8 Q2H 701 D 1 
HETATM 23 N N10 Q2H . . . I 2 18.716 24.68 71.43 1 52.3 ? N10 Q2H 701 D 1 
HETATM 24 N N14 Q2H . . . I 2 16.389 24.124 71.287 1 53.46 ? N14 Q2H 701 D 1 
HETATM 25 F F16 Q2H . . . I 2 18.131 28.279 69.605 1 55.21 ? F16 Q2H 701 D 1 
HETATM 26 F F17 Q2H . . . I 2 16.095 27.842 69.103 1 56.17 ? F17 Q2H 701 D 1 
HETATM 27 F F18 Q2H . . . I 2 16.585 28.577 71.067 1 55.64 ? F18 Q2H 701 D 1 
HETATM 28 C C23 Q2H . . . I 2 15.964 19.037 72.913 1 52.63 ? C23 Q2H 701 D 1 
HETATM 29 S S28 Q2H . . . I 2 12.961 28.297 73.439 1 64.75 ? S28 Q2H 701 D 1 
HETATM 30 O O29 Q2H . . . I 2 13.893 28.147 74.509 1 64.37 ? O29 Q2H 701 D 1 
HETATM 31 O O30 Q2H . . . I 2 13.431 28.725 72.161 1 64.66 ? O30 Q2H 701 D 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#