data_6YY1 # _model_server_result.job_id KxKtsyCuaLwhsjz3xNn6qQ _model_server_result.datetime_utc '2025-01-10 10:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6YY1 # _exptl.entry_id 6YY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6YY1 _cell.length_a 103.69 _cell.length_b 109.57 _cell.length_c 208.58 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J,M 1 1 C,D,F,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6YY1 _atom_sites.fract_transf_matrix[1][1] 0.009644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 401 1 GOL GOL . H 2 GOL B 1 401 2 GOL GOL . I 3 HOH A 1 501 52 HOH HOH . I 3 HOH A 2 502 51 HOH HOH . I 3 HOH A 3 503 45 HOH HOH . I 3 HOH A 4 504 49 HOH HOH . I 3 HOH A 5 505 53 HOH HOH . I 3 HOH A 6 506 50 HOH HOH . I 3 HOH A 7 507 3 HOH HOH . I 3 HOH A 8 508 36 HOH HOH . I 3 HOH A 9 509 22 HOH HOH . I 3 HOH A 10 510 41 HOH HOH . I 3 HOH A 11 511 18 HOH HOH . I 3 HOH A 12 512 2 HOH HOH . I 3 HOH A 13 513 4 HOH HOH . I 3 HOH A 14 514 44 HOH HOH . I 3 HOH A 15 515 54 HOH HOH . I 3 HOH A 16 516 29 HOH HOH . I 3 HOH A 17 517 1 HOH HOH . I 3 HOH A 18 518 40 HOH HOH . I 3 HOH A 19 519 47 HOH HOH . J 3 HOH B 1 501 9 HOH HOH . J 3 HOH B 2 502 5 HOH HOH . J 3 HOH B 3 503 13 HOH HOH . J 3 HOH B 4 504 6 HOH HOH . J 3 HOH B 5 505 8 HOH HOH . J 3 HOH B 6 506 24 HOH HOH . J 3 HOH B 7 507 23 HOH HOH . J 3 HOH B 8 508 11 HOH HOH . K 3 HOH C 1 401 31 HOH HOH . K 3 HOH C 2 402 27 HOH HOH . K 3 HOH C 3 403 35 HOH HOH . K 3 HOH C 4 404 30 HOH HOH . K 3 HOH C 5 405 14 HOH HOH . K 3 HOH C 6 406 32 HOH HOH . K 3 HOH C 7 407 19 HOH HOH . K 3 HOH C 8 408 28 HOH HOH . K 3 HOH C 9 409 34 HOH HOH . L 3 HOH D 1 401 56 HOH HOH . L 3 HOH D 2 402 46 HOH HOH . L 3 HOH D 3 403 25 HOH HOH . L 3 HOH D 4 404 38 HOH HOH . L 3 HOH D 5 405 10 HOH HOH . L 3 HOH D 6 406 15 HOH HOH . L 3 HOH D 7 407 26 HOH HOH . M 3 HOH E 1 401 7 HOH HOH . M 3 HOH E 2 402 42 HOH HOH . M 3 HOH E 3 403 16 HOH HOH . M 3 HOH E 4 404 48 HOH HOH . M 3 HOH E 5 405 39 HOH HOH . M 3 HOH E 6 406 12 HOH HOH . M 3 HOH E 7 407 55 HOH HOH . M 3 HOH E 8 408 20 HOH HOH . N 3 HOH F 1 401 43 HOH HOH . N 3 HOH F 2 402 17 HOH HOH . N 3 HOH F 3 403 21 HOH HOH . N 3 HOH F 4 404 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 -20.049 45.918 3.395 1 48.81 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . G 2 -20.216 45.121 4.595 1 43.96 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . G 2 -18.776 46.718 3.51 1 51.5 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . G 2 -17.674 45.936 3.316 1 49.34 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . G 2 -18.924 47.809 2.43 1 50.09 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . G 2 -17.907 48.816 2.624 1 51.36 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . G 2 -20.002 45.37 2.595 1 58.58 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . G 2 -20.79 46.529 3.254 1 58.58 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . G 2 -21.068 45.093 4.772 1 52.75 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . G 2 -18.675 47.107 4.393 1 61.8 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . G 2 -16.975 46.469 3.356 1 59.21 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . G 2 -18.87 47.381 1.561 1 60.11 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . G 2 -19.824 48.167 2.484 1 60.11 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . G 2 -18.268 49.582 2.676 1 61.63 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 141 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #