data_6YYA # _model_server_result.job_id 4Or2f9O_0v4naUiLPGKduQ _model_server_result.datetime_utc '2024-11-14 07:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6yya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6YYA # _exptl.entry_id 6YYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.286 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-azanyl-6-[1-[(3-fluorophenyl)methyl]pyrazol-4-yl]pyrimidine-5-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.81 _cell.angle_gamma 90 _cell.entry_id 6YYA _cell.length_a 47.801 _cell.length_b 64.956 _cell.length_c 48.277 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6YYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H11 F N6' _chem_comp.formula_weight 294.286 _chem_comp.id PZK _chem_comp.mon_nstd_flag . _chem_comp.name 4-azanyl-6-[1-[(3-fluorophenyl)methyl]pyrazol-4-yl]pyrimidine-5-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 PZK sing 286 n n N03 C02 PZK doub 287 n y N03 C04 PZK sing 288 n y C02 C07 PZK sing 289 n y C04 N05 PZK doub 290 n y C07 C08 PZK sing 291 n n C07 C06 PZK doub 292 n y N05 C06 PZK sing 293 n y C08 N09 PZK trip 294 n n C06 C10 PZK sing 295 n n C10 C14 PZK sing 296 n y C10 C11 PZK doub 297 n y C14 N13 PZK doub 298 n y C11 N12 PZK sing 299 n y N13 N12 PZK sing 300 n y N12 C15 PZK sing 301 n n C18 C17 PZK doub 302 n y C18 C19 PZK sing 303 n y C17 C16 PZK sing 304 n y C19 C20 PZK doub 305 n y C16 C15 PZK sing 306 n n C16 C21 PZK doub 307 n y C20 C21 PZK sing 308 n y C20 F22 PZK sing 309 n n C15 H1 PZK sing 310 n n C15 H2 PZK sing 311 n n C17 H3 PZK sing 312 n n C21 H4 PZK sing 313 n n N01 H5 PZK sing 314 n n N01 H6 PZK sing 315 n n C04 H7 PZK sing 316 n n C11 H8 PZK sing 317 n n C14 H9 PZK sing 318 n n C18 H10 PZK sing 319 n n C19 H11 PZK sing 320 n n # _atom_sites.entry_id 6YYA _atom_sites.fract_transf_matrix[1][1] 0.02092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007952 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PZK A 1 301 1 PZK LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 2 EDO EDO . G 4 EDO A 1 306 3 EDO EDO . H 5 HOH A 1 401 53 HOH HOH . H 5 HOH A 2 402 196 HOH HOH . H 5 HOH A 3 403 107 HOH HOH . H 5 HOH A 4 404 208 HOH HOH . H 5 HOH A 5 405 68 HOH HOH . H 5 HOH A 6 406 157 HOH HOH . H 5 HOH A 7 407 93 HOH HOH . H 5 HOH A 8 408 180 HOH HOH . H 5 HOH A 9 409 128 HOH HOH . H 5 HOH A 10 410 213 HOH HOH . H 5 HOH A 11 411 78 HOH HOH . H 5 HOH A 12 412 44 HOH HOH . H 5 HOH A 13 413 227 HOH HOH . H 5 HOH A 14 414 184 HOH HOH . H 5 HOH A 15 415 115 HOH HOH . H 5 HOH A 16 416 185 HOH HOH . H 5 HOH A 17 417 221 HOH HOH . H 5 HOH A 18 418 116 HOH HOH . H 5 HOH A 19 419 71 HOH HOH . H 5 HOH A 20 420 67 HOH HOH . H 5 HOH A 21 421 139 HOH HOH . H 5 HOH A 22 422 120 HOH HOH . H 5 HOH A 23 423 85 HOH HOH . H 5 HOH A 24 424 69 HOH HOH . H 5 HOH A 25 425 142 HOH HOH . H 5 HOH A 26 426 156 HOH HOH . H 5 HOH A 27 427 193 HOH HOH . H 5 HOH A 28 428 57 HOH HOH . H 5 HOH A 29 429 22 HOH HOH . H 5 HOH A 30 430 125 HOH HOH . H 5 HOH A 31 431 38 HOH HOH . H 5 HOH A 32 432 96 HOH HOH . H 5 HOH A 33 433 26 HOH HOH . H 5 HOH A 34 434 219 HOH HOH . H 5 HOH A 35 435 3 HOH HOH . H 5 HOH A 36 436 33 HOH HOH . H 5 HOH A 37 437 100 HOH HOH . H 5 HOH A 38 438 20 HOH HOH . H 5 HOH A 39 439 15 HOH HOH . H 5 HOH A 40 440 25 HOH HOH . H 5 HOH A 41 441 65 HOH HOH . H 5 HOH A 42 442 140 HOH HOH . H 5 HOH A 43 443 63 HOH HOH . H 5 HOH A 44 444 199 HOH HOH . H 5 HOH A 45 445 187 HOH HOH . H 5 HOH A 46 446 155 HOH HOH . H 5 HOH A 47 447 181 HOH HOH . H 5 HOH A 48 448 59 HOH HOH . H 5 HOH A 49 449 14 HOH HOH . H 5 HOH A 50 450 105 HOH HOH . H 5 HOH A 51 451 70 HOH HOH . H 5 HOH A 52 452 13 HOH HOH . H 5 HOH A 53 453 109 HOH HOH . H 5 HOH A 54 454 49 HOH HOH . H 5 HOH A 55 455 154 HOH HOH . H 5 HOH A 56 456 186 HOH HOH . H 5 HOH A 57 457 113 HOH HOH . H 5 HOH A 58 458 163 HOH HOH . H 5 HOH A 59 459 7 HOH HOH . H 5 HOH A 60 460 238 HOH HOH . H 5 HOH A 61 461 236 HOH HOH . H 5 HOH A 62 462 232 HOH HOH . H 5 HOH A 63 463 111 HOH HOH . H 5 HOH A 64 464 127 HOH HOH . H 5 HOH A 65 465 122 HOH HOH . H 5 HOH A 66 466 6 HOH HOH . H 5 HOH A 67 467 173 HOH HOH . H 5 HOH A 68 468 62 HOH HOH . H 5 HOH A 69 469 17 HOH HOH . H 5 HOH A 70 470 36 HOH HOH . H 5 HOH A 71 471 171 HOH HOH . H 5 HOH A 72 472 145 HOH HOH . H 5 HOH A 73 473 43 HOH HOH . H 5 HOH A 74 474 209 HOH HOH . H 5 HOH A 75 475 159 HOH HOH . H 5 HOH A 76 476 141 HOH HOH . H 5 HOH A 77 477 106 HOH HOH . H 5 HOH A 78 478 55 HOH HOH . H 5 HOH A 79 479 5 HOH HOH . H 5 HOH A 80 480 42 HOH HOH . H 5 HOH A 81 481 101 HOH HOH . H 5 HOH A 82 482 24 HOH HOH . H 5 HOH A 83 483 108 HOH HOH . H 5 HOH A 84 484 206 HOH HOH . H 5 HOH A 85 485 8 HOH HOH . H 5 HOH A 86 486 146 HOH HOH . H 5 HOH A 87 487 89 HOH HOH . H 5 HOH A 88 488 250 HOH HOH . H 5 HOH A 89 489 87 HOH HOH . H 5 HOH A 90 490 223 HOH HOH . H 5 HOH A 91 491 121 HOH HOH . H 5 HOH A 92 492 103 HOH HOH . H 5 HOH A 93 493 137 HOH HOH . H 5 HOH A 94 494 2 HOH HOH . H 5 HOH A 95 495 165 HOH HOH . H 5 HOH A 96 496 29 HOH HOH . H 5 HOH A 97 497 150 HOH HOH . H 5 HOH A 98 498 58 HOH HOH . H 5 HOH A 99 499 82 HOH HOH . H 5 HOH A 100 500 60 HOH HOH . H 5 HOH A 101 501 129 HOH HOH . H 5 HOH A 102 502 48 HOH HOH . H 5 HOH A 103 503 10 HOH HOH . H 5 HOH A 104 504 91 HOH HOH . H 5 HOH A 105 505 77 HOH HOH . H 5 HOH A 106 506 94 HOH HOH . H 5 HOH A 107 507 80 HOH HOH . H 5 HOH A 108 508 66 HOH HOH . H 5 HOH A 109 509 16 HOH HOH . H 5 HOH A 110 510 31 HOH HOH . H 5 HOH A 111 511 135 HOH HOH . H 5 HOH A 112 512 136 HOH HOH . H 5 HOH A 113 513 194 HOH HOH . H 5 HOH A 114 514 74 HOH HOH . H 5 HOH A 115 515 148 HOH HOH . H 5 HOH A 116 516 39 HOH HOH . H 5 HOH A 117 517 243 HOH HOH . H 5 HOH A 118 518 237 HOH HOH . H 5 HOH A 119 519 12 HOH HOH . H 5 HOH A 120 520 143 HOH HOH . H 5 HOH A 121 521 86 HOH HOH . H 5 HOH A 122 522 45 HOH HOH . H 5 HOH A 123 523 241 HOH HOH . H 5 HOH A 124 524 248 HOH HOH . H 5 HOH A 125 525 147 HOH HOH . H 5 HOH A 126 526 102 HOH HOH . H 5 HOH A 127 527 169 HOH HOH . H 5 HOH A 128 528 51 HOH HOH . H 5 HOH A 129 529 210 HOH HOH . H 5 HOH A 130 530 1 HOH HOH . H 5 HOH A 131 531 104 HOH HOH . H 5 HOH A 132 532 35 HOH HOH . H 5 HOH A 133 533 190 HOH HOH . H 5 HOH A 134 534 83 HOH HOH . H 5 HOH A 135 535 4 HOH HOH . H 5 HOH A 136 536 92 HOH HOH . H 5 HOH A 137 537 203 HOH HOH . H 5 HOH A 138 538 133 HOH HOH . H 5 HOH A 139 539 124 HOH HOH . H 5 HOH A 140 540 90 HOH HOH . H 5 HOH A 141 541 162 HOH HOH . H 5 HOH A 142 542 79 HOH HOH . H 5 HOH A 143 543 191 HOH HOH . H 5 HOH A 144 544 30 HOH HOH . H 5 HOH A 145 545 81 HOH HOH . H 5 HOH A 146 546 19 HOH HOH . H 5 HOH A 147 547 76 HOH HOH . H 5 HOH A 148 548 176 HOH HOH . H 5 HOH A 149 549 9 HOH HOH . H 5 HOH A 150 550 218 HOH HOH . H 5 HOH A 151 551 40 HOH HOH . H 5 HOH A 152 552 11 HOH HOH . H 5 HOH A 153 553 99 HOH HOH . H 5 HOH A 154 554 28 HOH HOH . H 5 HOH A 155 555 161 HOH HOH . H 5 HOH A 156 556 153 HOH HOH . H 5 HOH A 157 557 138 HOH HOH . H 5 HOH A 158 558 27 HOH HOH . H 5 HOH A 159 559 97 HOH HOH . H 5 HOH A 160 560 18 HOH HOH . H 5 HOH A 161 561 126 HOH HOH . H 5 HOH A 162 562 37 HOH HOH . H 5 HOH A 163 563 179 HOH HOH . H 5 HOH A 164 564 73 HOH HOH . H 5 HOH A 165 565 52 HOH HOH . H 5 HOH A 166 566 61 HOH HOH . H 5 HOH A 167 567 56 HOH HOH . H 5 HOH A 168 568 151 HOH HOH . H 5 HOH A 169 569 41 HOH HOH . H 5 HOH A 170 570 114 HOH HOH . H 5 HOH A 171 571 178 HOH HOH . H 5 HOH A 172 572 84 HOH HOH . H 5 HOH A 173 573 211 HOH HOH . H 5 HOH A 174 574 50 HOH HOH . H 5 HOH A 175 575 47 HOH HOH . H 5 HOH A 176 576 110 HOH HOH . H 5 HOH A 177 577 167 HOH HOH . H 5 HOH A 178 578 23 HOH HOH . H 5 HOH A 179 579 170 HOH HOH . H 5 HOH A 180 580 34 HOH HOH . H 5 HOH A 181 581 235 HOH HOH . H 5 HOH A 182 582 242 HOH HOH . H 5 HOH A 183 583 166 HOH HOH . H 5 HOH A 184 584 134 HOH HOH . H 5 HOH A 185 585 183 HOH HOH . H 5 HOH A 186 586 216 HOH HOH . H 5 HOH A 187 587 72 HOH HOH . H 5 HOH A 188 588 95 HOH HOH . H 5 HOH A 189 589 172 HOH HOH . H 5 HOH A 190 590 46 HOH HOH . H 5 HOH A 191 591 75 HOH HOH . H 5 HOH A 192 592 205 HOH HOH . H 5 HOH A 193 593 168 HOH HOH . H 5 HOH A 194 594 225 HOH HOH . H 5 HOH A 195 595 117 HOH HOH . H 5 HOH A 196 596 189 HOH HOH . H 5 HOH A 197 597 112 HOH HOH . H 5 HOH A 198 598 245 HOH HOH . H 5 HOH A 199 599 182 HOH HOH . H 5 HOH A 200 600 98 HOH HOH . H 5 HOH A 201 601 212 HOH HOH . H 5 HOH A 202 602 160 HOH HOH . H 5 HOH A 203 603 215 HOH HOH . H 5 HOH A 204 604 119 HOH HOH . H 5 HOH A 205 605 149 HOH HOH . H 5 HOH A 206 606 197 HOH HOH . H 5 HOH A 207 607 152 HOH HOH . H 5 HOH A 208 608 200 HOH HOH . H 5 HOH A 209 609 32 HOH HOH . H 5 HOH A 210 610 132 HOH HOH . H 5 HOH A 211 611 234 HOH HOH . H 5 HOH A 212 612 54 HOH HOH . H 5 HOH A 213 613 164 HOH HOH . H 5 HOH A 214 614 228 HOH HOH . H 5 HOH A 215 615 158 HOH HOH . H 5 HOH A 216 616 123 HOH HOH . H 5 HOH A 217 617 192 HOH HOH . H 5 HOH A 218 618 247 HOH HOH . H 5 HOH A 219 619 233 HOH HOH . H 5 HOH A 220 620 207 HOH HOH . H 5 HOH A 221 621 64 HOH HOH . H 5 HOH A 222 622 130 HOH HOH . H 5 HOH A 223 623 220 HOH HOH . H 5 HOH A 224 624 230 HOH HOH . H 5 HOH A 225 625 222 HOH HOH . H 5 HOH A 226 626 21 HOH HOH . H 5 HOH A 227 627 88 HOH HOH . H 5 HOH A 228 628 246 HOH HOH . H 5 HOH A 229 629 175 HOH HOH . H 5 HOH A 230 630 144 HOH HOH . H 5 HOH A 231 631 226 HOH HOH . H 5 HOH A 232 632 177 HOH HOH . H 5 HOH A 233 633 174 HOH HOH . H 5 HOH A 234 634 240 HOH HOH . H 5 HOH A 235 635 239 HOH HOH . H 5 HOH A 236 636 131 HOH HOH . H 5 HOH A 237 637 118 HOH HOH . H 5 HOH A 238 638 231 HOH HOH . H 5 HOH A 239 639 249 HOH HOH . H 5 HOH A 240 640 202 HOH HOH . H 5 HOH A 241 641 244 HOH HOH . H 5 HOH A 242 642 214 HOH HOH . H 5 HOH A 243 643 217 HOH HOH . H 5 HOH A 244 644 224 HOH HOH . H 5 HOH A 245 645 229 HOH HOH . H 5 HOH A 246 646 188 HOH HOH . H 5 HOH A 247 647 204 HOH HOH . H 5 HOH A 248 648 198 HOH HOH . H 5 HOH A 249 649 201 HOH HOH . H 5 HOH A 250 650 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 PZK . . . B 2 20.141 15.341 34.443 1 16.57 ? C10 PZK 301 A 1 HETATM 2 N N12 PZK . . . B 2 20.737 14.892 36.486 1 19.65 ? N12 PZK 301 A 1 HETATM 3 C C15 PZK . . . B 2 21.109 14.183 37.704 1 21.34 ? C15 PZK 301 A 1 HETATM 4 C C17 PZK . . . B 2 22.952 12.765 36.807 1 23.85 ? C17 PZK 301 A 1 HETATM 5 C C20 PZK . . . B 2 24.988 14.265 37.952 1 20.61 ? C20 PZK 301 A 1 HETATM 6 C C21 PZK . . . B 2 23.645 14.641 38.143 1 23.56 ? C21 PZK 301 A 1 HETATM 7 N N01 PZK . . . B 2 19.366 12.881 30.097 1 16.52 ? N01 PZK 301 A 1 HETATM 8 C C02 PZK . . . B 2 19.309 14.05 30.89 1 16.75 ? C02 PZK 301 A 1 HETATM 9 N N03 PZK . . . B 2 18.808 15.19 30.394 1 15.89 ? N03 PZK 301 A 1 HETATM 10 C C04 PZK . . . B 2 18.761 16.29 31.147 1 19.18 ? C04 PZK 301 A 1 HETATM 11 N N05 PZK . . . B 2 19.18 16.311 32.402 1 18.08 ? N05 PZK 301 A 1 HETATM 12 C C06 PZK . . . B 2 19.675 15.243 32.987 1 16.31 ? C06 PZK 301 A 1 HETATM 13 C C07 PZK . . . B 2 19.771 14.032 32.21 1 16.82 ? C07 PZK 301 A 1 HETATM 14 C C08 PZK . . . B 2 20.322 12.749 32.766 1 21.69 ? C08 PZK 301 A 1 HETATM 15 N N09 PZK . . . B 2 20.733 11.775 33.166 1 21.61 ? N09 PZK 301 A 1 HETATM 16 C C11 PZK . . . B 2 20.351 14.33 35.332 1 19.24 ? C11 PZK 301 A 1 HETATM 17 N N13 PZK . . . B 2 20.782 16.229 36.365 1 18.99 ? N13 PZK 301 A 1 HETATM 18 C C14 PZK . . . B 2 20.399 16.545 35.112 1 19.14 ? C14 PZK 301 A 1 HETATM 19 C C16 PZK . . . B 2 22.617 13.85 37.551 1 20.71 ? C16 PZK 301 A 1 HETATM 20 C C18 PZK . . . B 2 24.285 12.401 36.613 1 23.2 ? C18 PZK 301 A 1 HETATM 21 C C19 PZK . . . B 2 25.321 13.175 37.204 1 18.94 ? C19 PZK 301 A 1 HETATM 22 F F22 PZK . . . B 2 25.999 15 38.509 1 29.79 ? F22 PZK 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #